BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAE12f02.yg.2.1
(290 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV252351.1|CV252351 PX0011.B21_G15 PT-X-FL-A-1 Populus t... 103 4e-021
gb|CF232388.1|CF232388 PtaJXO0009H2H0216 Poplar cDNA librar... 88 2e-016
gb|CF235321.1|CF235321 PtaJXT0021D9D0907 Poplar cDNA librar... 88 2e-016
gb|AJ774508.1|AJ774508 AJ774508 Populus euphratica shoot 3-... 88 2e-016
gb|AJ775294.1|AJ775294 AJ775294 Populus euphratica shoot 3-... 88 2e-016
gb|AJ775532.1|AJ775532 AJ775532 Populus euphratica shoot 3-... 88 2e-016
gb|AY095297.1| Populus tremuloides cellulose synthase (CesA... 88 2e-016
gb|AJ778410.1|AJ778410 AJ778410 Populus euphratica cambium ... 82 1e-014
gb|BI128217.1|BI128217 G072P74Y Populus cambium cDNA librar... 76 8e-013
gb|BU897746.1|BU897746 X067G02 Populus wood cDNA library Po... 76 8e-013
gb|CF237222.1|CF237222 Ptajxtjxt3E10E1010 Poplar cDNA libra... 76 8e-013
gb|CK102305.1|CK102305 G072P74.5pR Populus tension wood cDN... 76 8e-013
gb|CN550567.1|CN550567 GQ0241.B3_I15 GQ024 Populus trichoca... 76 8e-013
gb|DT487943.1|DT487943 WS02535.B21_B11 PT-MB-N-A-15 Populus... 76 8e-013
gb|CK102299.1|CK102299 G072P58.5pR Populus tension wood cDN... 60 5e-008
gb|CF227669.1|CF227669 PtaXM0003A12A1202 Poplar cDNA librar... 58 2e-007
gb|CN524029.1|CN524029 GQ015M07.T3_H06 GQ015 Populus tricho... 58 2e-007
gb|CN524680.1|CN524680 GQ015M13.T3_D10 GQ015 Populus tricho... 58 2e-007
gb|CK318639.1|CK318639 X9P01f01 Populus stem seasonal libra... 58 2e-007
gb|CV225435.1|CV225435 WS0161.B21_G07 PT-DX-A-7 Populus tri... 58 2e-007
gb|CV225888.1|CV225888 WS0162.B21_K19 PT-DX-A-7 Populus tri... 58 2e-007
gb|CV226017.1|CV226017 WS0163.B21_A20 PT-DX-A-7 Populus tri... 58 2e-007
gb|CV226195.1|CV226195 WS0163.B21_J02 PT-DX-A-7 Populus tri... 58 2e-007
gb|CV227633.1|CV227633 WS0167.B21_M03 PT-DX-A-7 Populus tri... 58 2e-007
gb|DT469902.1|DT469902 WS01919.C21_E06 PT-DX-N-A-10 Populus... 58 2e-007
gb|DT469819.1|DT469819 WS01918.C21_P21 PT-DX-N-A-10 Populus... 54 3e-006
gb|DT526486.1|DT526486 WS02048.C21_C18 PTxN-IB-N-A-11 Popul... 54 3e-006
gb|AI164546.1|AI164546 A064p24u Hybrid aspen plasmid librar... 50 5e-005
gb|BI128229.1|BI128229 G072P90Y Populus cambium cDNA librar... 50 5e-005
gb|BU894361.1|BU894361 X008A10 Populus wood cDNA library Po... 50 5e-005
gb|BU894931.1|BU894931 X017A07 Populus wood cDNA library Po... 50 5e-005
gb|CF232524.1|CF232524 PtaJXO0011E3E0309 Poplar cDNA librar... 50 5e-005
gb|CF233341.1|CF233341 PtaJXO0022B5B0503 Poplar cDNA librar... 50 5e-005
gb|CF235304.1|CF235304 PtaJXT0021C1C0105 Poplar cDNA librar... 50 5e-005
gb|CK088642.1|CK088642 A064P24.3pR Hybrid aspen plasmid lib... 50 5e-005
gb|CK093129.1|CK093129 G109P08.3pR Populus tension wood cDN... 50 5e-005
gb|CV232087.1|CV232087 WS0196.B21_I06 PT-DX-N-A-10 Populus ... 50 5e-005
gb|CV268970.1|CV268970 WS0206.B21_P09 PTxN-IB-N-A-11 Populu... 50 5e-005
gb|AF527387.1| Populus tremuloides xylem-specific cellulose... 50 5e-005
gb|AY573571.1| Populus tremula x Populus tremuloides cellul... 50 5e-005
gb|CK092703.1|CK092703 G092P25.3pR Populus tension wood cDN... 48 2e-004
gb|CK097446.1|CK097446 UB51DPD11.3pR Populus active cambium... 48 2e-004
gb|CK102806.1|CK102806 G092P25.5pR Populus tension wood cDN... 48 2e-004
gb|CV130875.1|CV130875 X9SP07b02 Populus stem seasonal libr... 48 2e-004
gb|CV252662.1|CV252662 PX0015.B21_I21 PT-X-FL-A-1 Populus t... 48 2e-004
gb|CV262834.1|CV262834 WS0202.B21_K05 PTxN-IB-N-A-11 Populu... 48 2e-004
gb|CV282433.1|CV282433 WS0184.B21_J19 PTxD-IL-N-A-9 Populus... 48 2e-004
gb|DT493063.1|DT493063 WS02553.C21_E11 PT-MB-N-A-15 Populus... 48 2e-004
gb|DT500468.1|DT500468 PX0015.BR_I21 PT-X-FL-A-1 Populus tr... 48 2e-004
gb|AY162181.1| Populus tremuloides cellulose synthase (CesA... 48 2e-004
gb|BU895092.1|BU895092 X019B09 Populus wood cDNA library Po... 46 7e-004
gb|CV272431.1|CV272431 WS0157.B21_K08 PTxN-IB-A-6 Populus t... 46 7e-004
gb|AY196961.1| Populus tremuloides cellulose synthase 6 (Ce... 46 7e-004
gb|CV273266.1|CV273266 WS01710.B21_E12 PTxD-NR-A-8 Populus ... 44 0.003
gb|CV275252.1|CV275252 WS0175.B21_N18 PTxD-NR-A-8 Populus t... 44 0.003
gb|BU894855.1|BU894855 X016A07 Populus wood cDNA library Po... 42 0.011
gb|AF081534.1|AF081534 Populus x canescens cellulose syntha... 42 0.011
gb|BU897334.1|BU897334 X055D05 Populus wood cDNA library Po... 40 0.044
gb|CA934196.1|CA934196 MTU3TS.P4.D08 Aspen stem cDNA Librar... 40 0.044
gb|CF234438.1|CF234438 Ptajxojxo2F10F1012 Poplar cDNA libra... 40 0.044
gb|CV225999.1|CV225999 WS0162.B21_P23 PT-DX-A-7 Populus tri... 40 0.044
gb|DT493580.1|DT493580 WS0111.BR_M17 PT-P-FL-A-2 Populus tr... 40 0.044
>gb|CV252351.1|CV252351 PX0011.B21_G15 PT-X-FL-A-1 Populus trichocarpa cDNA clone
PX0011_G15 3', mRNA sequence
Length = 445
Score = 103 bits (52), Expect = 4e-021
Identities = 79/89 (88%)
Strand = Plus / Minus
Query: 123 ttcgggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggt 182
|||||||||||||||||||| || |||||||||| | | || || || ||||||||||||
Sbjct: 370 ttcgggaagctcttctttgccttctgggtgattgtccatctttacccgttcctcaaaggt 311
Query: 183 ttggttgggaggcaaaacaggacaccgac 211
||| | |||||||||||||||||||||||
Sbjct: 310 ttgatggggaggcaaaacaggacaccgac 282
>gb|CF232388.1|CF232388 PtaJXO0009H2H0216 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 629
Score = 87.7 bits (44), Expect = 2e-016
Identities = 77/89 (86%)
Strand = Plus / Plus
Query: 123 ttcgggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggt 182
|||||||||||||||||||| || |||||||||| | | || || || ||||||||||||
Sbjct: 447 ttcgggaagctcttctttgccttctgggtgattgtccatctctacccattcctcaaaggt 506
Query: 183 ttggttgggaggcaaaacaggacaccgac 211
| | |||||||||||||||||||||||
Sbjct: 507 ctaatggggaggcaaaacaggacaccgac 535
>gb|CF235321.1|CF235321 PtaJXT0021D9D0907 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 486
Score = 87.7 bits (44), Expect = 2e-016
Identities = 77/89 (86%)
Strand = Plus / Plus
Query: 123 ttcgggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggt 182
|||||||||||||||||||| || |||||||||| | | || || || ||||||||||||
Sbjct: 64 ttcgggaagctcttctttgccttctgggtgattgtccatctctacccattcctcaaaggt 123
Query: 183 ttggttgggaggcaaaacaggacaccgac 211
| | |||||||||||||||||||||||
Sbjct: 124 ctaatggggaggcaaaacaggacaccgac 152
>gb|AJ774508.1|AJ774508 AJ774508 Populus euphratica shoot 3-6 months Populus euphratica
cDNA clone P0000300021B12F1, mRNA sequence
Length = 655
Score = 87.7 bits (44), Expect = 2e-016
Identities = 77/89 (86%)
Strand = Plus / Plus
Query: 123 ttcgggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggt 182
|||||||||||||||||||| || |||||||||| | | || || || ||||||||||||
Sbjct: 421 ttcgggaagctcttctttgccttctgggtgattgtccatctctacccattcctcaaaggt 480
Query: 183 ttggttgggaggcaaaacaggacaccgac 211
| | |||||||||||||||||||||||
Sbjct: 481 ctaatggggaggcaaaacaggacaccgac 509
>gb|AJ775294.1|AJ775294 AJ775294 Populus euphratica shoot 3-6 months Populus euphratica
cDNA clone P0000300030F05F1, mRNA sequence
Length = 385
Score = 87.7 bits (44), Expect = 2e-016
Identities = 77/89 (86%)
Strand = Plus / Plus
Query: 123 ttcgggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggt 182
|||||||||||||||||||| || |||||||||| | | || || || ||||||||||||
Sbjct: 152 ttcgggaagctcttctttgccttctgggtgattgtccatctctacccattcctcaaaggt 211
Query: 183 ttggttgggaggcaaaacaggacaccgac 211
| | |||||||||||||||||||||||
Sbjct: 212 ctaatggggaggcaaaacaggacaccgac 240
>gb|AJ775532.1|AJ775532 AJ775532 Populus euphratica shoot 3-6 months Populus euphratica
cDNA clone P0000300033F04F1, mRNA sequence
Length = 589
Score = 87.7 bits (44), Expect = 2e-016
Identities = 77/89 (86%)
Strand = Plus / Plus
Query: 123 ttcgggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggt 182
|||||||||||||||||||| || |||||||||| | | || || || ||||||||||||
Sbjct: 276 ttcgggaagctcttctttgccttctgggtgattgtccatctctacccattcctcaaaggt 335
Query: 183 ttggttgggaggcaaaacaggacaccgac 211
| | |||||||||||||||||||||||
Sbjct: 336 ctaatggggaggcaaaacaggacaccgac 364
>gb|AY095297.1| Populus tremuloides cellulose synthase (CesA2) mRNA, complete cds
Length = 3277
Score = 87.7 bits (44), Expect = 2e-016
Identities = 77/89 (86%)
Strand = Plus / Plus
Query: 123 ttcgggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggt 182
|||||||||||||||||||| || |||||||||| | | || || || ||||||||||||
Sbjct: 2910 ttcgggaagctcttctttgccttctgggtgattgtccatctctacccattcctcaaaggt 2969
Query: 183 ttggttgggaggcaaaacaggacaccgac 211
| | |||||||||||||||||||||||
Sbjct: 2970 ctaatggggaggcaaaacaggacaccgac 2998
>gb|AJ778410.1|AJ778410 AJ778410 Populus euphratica cambium 3-6 months Populus euphratica
cDNA clone P0000500004B05F1, mRNA sequence
Length = 634
Score = 81.8 bits (41), Expect = 1e-014
Identities = 74/86 (86%)
Strand = Plus / Plus
Query: 123 ttcgggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggt 182
|||||||||||||||||||| || |||||||||| | | || || || ||||||||||||
Sbjct: 272 ttcgggaagctcttctttgccttctgggtgattgtccatctctacccattcctcaaaggt 331
Query: 183 ttggttgggaggcaaaacaggacacc 208
| | ||||||||||||||||||||
Sbjct: 332 ctaatggggaggcaaaacaggacacc 357
>gb|BI128217.1|BI128217 G072P74Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 490
Score = 75.8 bits (38), Expect = 8e-013
Identities = 71/83 (85%)
Strand = Plus / Plus
Query: 126 gggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttg 185
||||||||||||||||| || |||||||||| | | || || || |||||||||||| |
Sbjct: 143 gggaagctcttctttgccttctgggtgattgtccatctctacccattcctcaaaggtcta 202
Query: 186 gttgggaggcaaaacaggacacc 208
| ||||||||||||||||||||
Sbjct: 203 atggggaggcaaaacaggacacc 225
>gb|BU897746.1|BU897746 X067G02 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 367
Score = 75.8 bits (38), Expect = 8e-013
Identities = 71/83 (85%)
Strand = Plus / Plus
Query: 126 gggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttg 185
||||||||||||||||| || |||||||||| | | || || || |||||||||||| |
Sbjct: 33 gggaagctcttctttgccttctgggtgattgtccatctctacccattcctcaaaggtcta 92
Query: 186 gttgggaggcaaaacaggacacc 208
| ||||||||||||||||||||
Sbjct: 93 atggggaggcaaaacaggacacc 115
>gb|CF237222.1|CF237222 Ptajxtjxt3E10E1010 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 441
Score = 75.8 bits (38), Expect = 8e-013
Identities = 71/83 (85%)
Strand = Plus / Plus
Query: 126 gggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttg 185
||||||||||||||||| || |||||||||| | | || || || |||||||||||| |
Sbjct: 72 gggaagctcttctttgccttctgggtgattgtccatctctacccattcctcaaaggtcta 131
Query: 186 gttgggaggcaaaacaggacacc 208
| ||||||||||||||||||||
Sbjct: 132 atggggaggcaaaacaggacacc 154
>gb|CK102305.1|CK102305 G072P74.5pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G072P74 5', mRNA sequence
Length = 389
Score = 75.8 bits (38), Expect = 8e-013
Identities = 71/83 (85%)
Strand = Plus / Plus
Query: 126 gggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttg 185
||||||||||||||||| || |||||||||| | | || || || |||||||||||| |
Sbjct: 143 gggaagctcttctttgccttctgggtgattgtccatctctacccattcctcaaaggtcta 202
Query: 186 gttgggaggcaaaacaggacacc 208
| ||||||||||||||||||||
Sbjct: 203 atggggaggcaaaacaggacacc 225
>gb|CN550567.1|CN550567 GQ0241.B3_I15 GQ024 Populus trichocarpa x Populus deltoides cDNA
clone GQ0241_I15 5', mRNA sequence
Length = 777
Score = 75.8 bits (38), Expect = 8e-013
Identities = 71/83 (85%)
Strand = Plus / Plus
Query: 126 gggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttg 185
||||||||||||||||| || |||||||||| | | || || || |||||||||||| |
Sbjct: 436 gggaagctcttctttgccttctgggtgattgtccatctctacccattcctcaaaggtcta 495
Query: 186 gttgggaggcaaaacaggacacc 208
| ||||||||||||||||||||
Sbjct: 496 atggggaggcaaaacaggacacc 518
>gb|DT487943.1|DT487943 WS02535.B21_B11 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02535_B11 3', mRNA sequence
Length = 720
Score = 75.8 bits (38), Expect = 8e-013
Identities = 71/83 (85%)
Strand = Plus / Plus
Query: 126 gggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttg 185
||||||||||||||||| || |||||||||| | | || || || |||||||||||| |
Sbjct: 595 gggaagctcttctttgccttctgggtgattgtccatctctacccattcctcaaaggtcta 654
Query: 186 gttgggaggcaaaacaggacacc 208
| ||||||||||||||||||||
Sbjct: 655 atggggaggcaaaacaggacacc 677
>gb|CK102299.1|CK102299 G072P58.5pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G072P58 5', mRNA sequence
Length = 364
Score = 60.0 bits (30), Expect = 5e-008
Identities = 66/79 (83%)
Strand = Plus / Plus
Query: 129 aagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttggtt 188
|||||||||||||| || |||||||||| | | | || || |||||||||||| | |
Sbjct: 69 aagctcttctttgccttctgggtgattgtccatcactacccattcctcaaaggtctaatg 128
Query: 189 gggaggcaaaacaggacac 207
|||||||||||||||||||
Sbjct: 129 gggaggcaaaacaggacac 147
>gb|CF227669.1|CF227669 PtaXM0003A12A1202 Poplar cDNA library from mature xylem Populus
alba x Populus tremula cDNA 5', mRNA sequence
Length = 340
Score = 58.0 bits (29), Expect = 2e-007
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 135 ttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttggttgggagg 194
|||||||| || |||||||||| | | || || || |||||||||||| | | ||||||
Sbjct: 1 ttctttgccttctgggtgattgtccatctctacccattcctcaaaggtctaatggggagg 60
Query: 195 caaaacaggacacc 208
||||||||||||||
Sbjct: 61 caaaacaggacacc 74
>gb|CN524029.1|CN524029 GQ015M07.T3_H06 GQ015 Populus trichocarpa x Populus deltoides cDNA
clone GQ015M07_H06 5', mRNA sequence
Length = 758
Score = 58.0 bits (29), Expect = 2e-007
Identities = 74/90 (82%)
Strand = Plus / Plus
Query: 126 gggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttg 185
|||||||| || || || || ||||| |||| | | || |||||||||||||||||| ||
Sbjct: 445 gggaagctatttttcgctttctgggtcattgtccatctctatcccttcctcaaaggtctg 504
Query: 186 gttgggaggcaaaacaggacaccgacaatt 215
| || |||||||||||||| || ||||||
Sbjct: 505 atgggaaggcaaaacaggactcctacaatt 534
>gb|CN524680.1|CN524680 GQ015M13.T3_D10 GQ015 Populus trichocarpa x Populus deltoides cDNA
clone GQ015M13_D10 5', mRNA sequence
Length = 796
Score = 58.0 bits (29), Expect = 2e-007
Identities = 74/90 (82%)
Strand = Plus / Plus
Query: 126 gggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttg 185
|||||||| || || || || ||||| |||| | | || |||||||||||||||||| ||
Sbjct: 585 gggaagctatttttcgctttctgggtcattgtccatctctatcccttcctcaaaggtctg 644
Query: 186 gttgggaggcaaaacaggacaccgacaatt 215
| || |||||||||||||| || ||||||
Sbjct: 645 atgggaaggcaaaacaggactcctacaatt 674
>gb|CK318639.1|CK318639 X9P01f01 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 673
Score = 58.0 bits (29), Expect = 2e-007
Identities = 74/90 (82%)
Strand = Plus / Plus
Query: 126 gggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttg 185
|||||||| || || || || ||||| |||| | | || |||||||||||||||||| ||
Sbjct: 258 gggaagctatttttcgctttctgggtcattgtccatctctatcccttcctcaaaggtctg 317
Query: 186 gttgggaggcaaaacaggacaccgacaatt 215
| || |||||||||||||| || ||||||
Sbjct: 318 atgggaaggcaaaacaggactcctacaatt 347
>gb|CV225435.1|CV225435 WS0161.B21_G07 PT-DX-A-7 Populus trichocarpa cDNA clone WS0161_G07
3', mRNA sequence
Length = 764
Score = 58.0 bits (29), Expect = 2e-007
Identities = 74/90 (82%)
Strand = Plus / Minus
Query: 126 gggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttg 185
|||||||| || || || || ||||| |||| | | || |||||||||||||||||| ||
Sbjct: 432 gggaagctatttttcgctttctgggtcattgtccatctctatcccttcctcaaaggtctg 373
Query: 186 gttgggaggcaaaacaggacaccgacaatt 215
| || |||||||||||||| || ||||||
Sbjct: 372 atgggaaggcaaaacaggactcctacaatt 343
>gb|CV225888.1|CV225888 WS0162.B21_K19 PT-DX-A-7 Populus trichocarpa cDNA clone WS0162_K19
3', mRNA sequence
Length = 883
Score = 58.0 bits (29), Expect = 2e-007
Identities = 74/90 (82%)
Strand = Plus / Minus
Query: 126 gggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttg 185
|||||||| || || || || ||||| |||| | | || |||||||||||||||||| ||
Sbjct: 432 gggaagctatttttcgctttctgggtcattgtccatctctatcccttcctcaaaggtctg 373
Query: 186 gttgggaggcaaaacaggacaccgacaatt 215
| || |||||||||||||| || ||||||
Sbjct: 372 atgggaaggcaaaacaggactcctacaatt 343
>gb|CV226017.1|CV226017 WS0163.B21_A20 PT-DX-A-7 Populus trichocarpa cDNA clone WS0163_A20
3', mRNA sequence
Length = 807
Score = 58.0 bits (29), Expect = 2e-007
Identities = 74/90 (82%)
Strand = Plus / Minus
Query: 126 gggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttg 185
|||||||| || || || || ||||| |||| | | || |||||||||||||||||| ||
Sbjct: 434 gggaagctatttttcgctttctgggtcattgtccatctctatcccttcctcaaaggtctg 375
Query: 186 gttgggaggcaaaacaggacaccgacaatt 215
| || |||||||||||||| || ||||||
Sbjct: 374 atgggaaggcaaaacaggactcctacaatt 345
>gb|CV226195.1|CV226195 WS0163.B21_J02 PT-DX-A-7 Populus trichocarpa cDNA clone WS0163_J02
3', mRNA sequence
Length = 806
Score = 58.0 bits (29), Expect = 2e-007
Identities = 74/90 (82%)
Strand = Plus / Minus
Query: 126 gggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttg 185
|||||||| || || || || ||||| |||| | | || |||||||||||||||||| ||
Sbjct: 432 gggaagctatttttcgctttctgggtcattgtccatctctatcccttcctcaaaggtctg 373
Query: 186 gttgggaggcaaaacaggacaccgacaatt 215
| || |||||||||||||| || ||||||
Sbjct: 372 atgggaaggcaaaacaggactcctacaatt 343
>gb|CV227633.1|CV227633 WS0167.B21_M03 PT-DX-A-7 Populus trichocarpa cDNA clone WS0167_M03
3', mRNA sequence
Length = 823
Score = 58.0 bits (29), Expect = 2e-007
Identities = 74/90 (82%)
Strand = Plus / Minus
Query: 126 gggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttg 185
|||||||| || || || || ||||| |||| | | || |||||||||||||||||| ||
Sbjct: 420 gggaagctatttttcgctttctgggtcattgtccatctctatcccttcctcaaaggtctg 361
Query: 186 gttgggaggcaaaacaggacaccgacaatt 215
| || |||||||||||||| || ||||||
Sbjct: 360 atgggaaggcaaaacaggactcctacaatt 331
>gb|DT469902.1|DT469902 WS01919.C21_E06 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01919_E06 3', mRNA sequence
Length = 361
Score = 58.0 bits (29), Expect = 2e-007
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 171 ttcctcaaaggtttggttgggaggcaaaacaggacaccgac 211
|||||||||||| || | |||||||||||||||||||||||
Sbjct: 33 ttcctcaaaggtctgatggggaggcaaaacaggacaccgac 73
>gb|DT469819.1|DT469819 WS01918.C21_P21 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01918_P21 3', mRNA sequence
Length = 341
Score = 54.0 bits (27), Expect = 3e-006
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 165 tatcccttcctcaaaggtttggttgggaggcaaaacaggacaccgacaatt 215
|||||||||||||||||| || | || |||||||||||||| || ||||||
Sbjct: 339 tatcccttcctcaaaggtctgatgggaaggcaaaacaggactcctacaatt 289
>gb|DT526486.1|DT526486 WS02048.C21_C18 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02048_C18 3', mRNA sequence
Length = 415
Score = 54.0 bits (27), Expect = 3e-006
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 165 tatcccttcctcaaaggtttggttgggaggcaaaacaggacaccgacaatt 215
||||| ||||||||||||||| | || |||||||||||||| || ||||||
Sbjct: 278 tatcctttcctcaaaggtttgatgggaaggcaaaacaggactcctacaatt 228
>gb|AI164546.1|AI164546 A064p24u Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 416
Score = 50.1 bits (25), Expect = 5e-005
Identities = 73/90 (81%)
Strand = Plus / Plus
Query: 126 gggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttg 185
|||||||| || || || || ||||| |||| | | || ||||| |||||||||||| ||
Sbjct: 240 gggaagctatttttcgctttctgggtcattgtccatctctatcctttcctcaaaggtctg 299
Query: 186 gttgggaggcaaaacaggacaccgacaatt 215
| || |||||||||||||| || ||||||
Sbjct: 300 atgggaaggcaaaacaggactcctacaatt 329
>gb|BI128229.1|BI128229 G072P90Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 440
Score = 50.1 bits (25), Expect = 5e-005
Identities = 73/90 (81%)
Strand = Plus / Plus
Query: 126 gggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttg 185
|||||||| || || || || ||||| |||| | | || ||||| |||||||||||| ||
Sbjct: 28 gggaagctatttttcgctttctgggtcattgtccatctctatcctttcctcaaaggtctg 87
Query: 186 gttgggaggcaaaacaggacaccgacaatt 215
| || |||||||||||||| || ||||||
Sbjct: 88 atgggaaggcaaaacaggactcctacaatt 117
>gb|BU894361.1|BU894361 X008A10 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 525
Score = 50.1 bits (25), Expect = 5e-005
Identities = 73/90 (81%)
Strand = Plus / Plus
Query: 126 gggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttg 185
|||||||| || || || || ||||| |||| | | || ||||| |||||||||||| ||
Sbjct: 107 gggaagctatttttcgctttctgggtcattgtccatctctatcctttcctcaaaggtctg 166
Query: 186 gttgggaggcaaaacaggacaccgacaatt 215
| || |||||||||||||| || ||||||
Sbjct: 167 atgggaaggcaaaacaggactcctacaatt 196
>gb|BU894931.1|BU894931 X017A07 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 550
Score = 50.1 bits (25), Expect = 5e-005
Identities = 73/90 (81%)
Strand = Plus / Plus
Query: 126 gggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttg 185
|||||||| || || || || ||||| |||| | | || ||||| |||||||||||| ||
Sbjct: 144 gggaagctatttttcgctttctgggtcattgtccatctctatcctttcctcaaaggtctg 203
Query: 186 gttgggaggcaaaacaggacaccgacaatt 215
| || |||||||||||||| || ||||||
Sbjct: 204 atgggaaggcaaaacaggactcctacaatt 233
>gb|CF232524.1|CF232524 PtaJXO0011E3E0309 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 620
Score = 50.1 bits (25), Expect = 5e-005
Identities = 73/90 (81%)
Strand = Plus / Plus
Query: 126 gggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttg 185
|||||||| || || || || ||||| |||| | | || ||||| |||||||||||| ||
Sbjct: 60 gggaagctatttttcgctttctgggtcattgtccatctctatcctttcctcaaaggtctg 119
Query: 186 gttgggaggcaaaacaggacaccgacaatt 215
| || |||||||||||||| || ||||||
Sbjct: 120 atgggaaggcaaaacaggactcctacaatt 149
>gb|CF233341.1|CF233341 PtaJXO0022B5B0503 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 656
Score = 50.1 bits (25), Expect = 5e-005
Identities = 73/90 (81%)
Strand = Plus / Plus
Query: 126 gggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttg 185
|||||||| || || || || ||||| |||| | | || ||||| |||||||||||| ||
Sbjct: 403 gggaagctatttttcgctttctgggtcattgtccatctctatcctttcctcaaaggtctg 462
Query: 186 gttgggaggcaaaacaggacaccgacaatt 215
| || |||||||||||||| || ||||||
Sbjct: 463 atgggaaggcaaaacaggactcctacaatt 492
>gb|CF235304.1|CF235304 PtaJXT0021C1C0105 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 744
Score = 50.1 bits (25), Expect = 5e-005
Identities = 73/90 (81%)
Strand = Plus / Plus
Query: 126 gggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttg 185
|||||||| || || || || ||||| |||| | | || ||||| |||||||||||| ||
Sbjct: 336 gggaagctatttttcgctttctgggtcattgtccatctctatcctttcctcaaaggtctg 395
Query: 186 gttgggaggcaaaacaggacaccgacaatt 215
| || |||||||||||||| || ||||||
Sbjct: 396 atgggaaggcaaaacaggactcctacaatt 425
>gb|CK088642.1|CK088642 A064P24.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A064P24 3', mRNA sequence
Length = 673
Score = 50.1 bits (25), Expect = 5e-005
Identities = 73/90 (81%)
Strand = Plus / Minus
Query: 126 gggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttg 185
|||||||| || || || || ||||| |||| | | || ||||| |||||||||||| ||
Sbjct: 433 gggaagctatttttcgctttctgggtcattgtccatctctatcctttcctcaaaggtctg 374
Query: 186 gttgggaggcaaaacaggacaccgacaatt 215
| || |||||||||||||| || ||||||
Sbjct: 373 atgggaaggcaaaacaggactcctacaatt 344
>gb|CK093129.1|CK093129 G109P08.3pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G109P08 3', mRNA sequence
Length = 783
Score = 50.1 bits (25), Expect = 5e-005
Identities = 73/90 (81%)
Strand = Plus / Minus
Query: 126 gggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttg 185
|||||||| || || || || ||||| |||| | | || ||||| |||||||||||| ||
Sbjct: 436 gggaagctatttttcgctttctgggtcattgtccatctctatcctttcctcaaaggtctg 377
Query: 186 gttgggaggcaaaacaggacaccgacaatt 215
| || |||||||||||||| || ||||||
Sbjct: 376 atgggaaggcaaaacaggactcctacaatt 347
>gb|CV232087.1|CV232087 WS0196.B21_I06 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0196_I06 3', mRNA sequence
Length = 646
Score = 50.1 bits (25), Expect = 5e-005
Identities = 73/90 (81%)
Strand = Plus / Minus
Query: 126 gggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttg 185
|||||||| || || || || ||||| |||| | | || ||||||||||||||| || ||
Sbjct: 451 gggaagctatttttcgctttctgggtcattgtccatctctatcccttcctcaaatgtctg 392
Query: 186 gttgggaggcaaaacaggacaccgacaatt 215
| || |||||||||||||| || ||||||
Sbjct: 391 atgggaaggcaaaacaggactcctacaatt 362
>gb|CV268970.1|CV268970 WS0206.B21_P09 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0206_P09 3', mRNA sequence
Length = 756
Score = 50.1 bits (25), Expect = 5e-005
Identities = 73/90 (81%)
Strand = Plus / Plus
Query: 126 gggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttg 185
|||||||| || || || || ||||| |||| | | || ||||| |||||||||||| ||
Sbjct: 637 gggaagctatttttcgctttctgggtcattgtccatctctatcctttcctcaaaggtctg 696
Query: 186 gttgggaggcaaaacaggacaccgacaatt 215
| || |||||||||||||| || ||||||
Sbjct: 697 atgggaaggcaaaacaggactcctacaatt 726
>gb|AF527387.1| Populus tremuloides xylem-specific cellulose synthase (CesA3) mRNA,
complete cds
Length = 3401
Score = 50.1 bits (25), Expect = 5e-005
Identities = 73/90 (81%)
Strand = Plus / Plus
Query: 126 gggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttg 185
|||||||| || || || || ||||| |||| | | || ||||| |||||||||||| ||
Sbjct: 2961 gggaagctatttttcgctttctgggtcattgtccatctctatcctttcctcaaaggtctg 3020
Query: 186 gttgggaggcaaaacaggacaccgacaatt 215
| || |||||||||||||| || ||||||
Sbjct: 3021 atgggaaggcaaaacaggactcctacaatt 3050
>gb|AY573571.1| Populus tremula x Populus tremuloides cellulose synthase (CesA1)
mRNA, complete cds
Length = 3472
Score = 50.1 bits (25), Expect = 5e-005
Identities = 73/90 (81%)
Strand = Plus / Plus
Query: 126 gggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttg 185
|||||||| || || || || ||||| |||| | | || ||||| |||||||||||| ||
Sbjct: 3033 gggaagctatttttcgctttctgggtcattgtccatctctatcctttcctcaaaggtctg 3092
Query: 186 gttgggaggcaaaacaggacaccgacaatt 215
| || |||||||||||||| || ||||||
Sbjct: 3093 atgggaaggcaaaacaggactcctacaatt 3122
>gb|CK092703.1|CK092703 G092P25.3pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G092P25 3', mRNA sequence
Length = 684
Score = 48.1 bits (24), Expect = 2e-004
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 129 aagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttg 185
|||||||||||||| ||||||| |||| | | ||||||| |||||||| ||||||
Sbjct: 545 aagctcttctttgctatttgggtcattgcccatttgtatcctttcctcaagggtttg 489
>gb|CK097446.1|CK097446 UB51DPD11.3pR Populus active cambium cDNA library Populus tremula
cDNA clone UB51DPD11 3', mRNA sequence
Length = 481
Score = 48.1 bits (24), Expect = 2e-004
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 129 aagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttg 185
|||||||||||||| ||||||| |||| | | ||||||| |||||||| ||||||
Sbjct: 382 aagctcttctttgctatttgggtcattgcccatttgtatcctttcctcaagggtttg 326
>gb|CK102806.1|CK102806 G092P25.5pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G092P25 5', mRNA sequence
Length = 448
Score = 48.1 bits (24), Expect = 2e-004
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 129 aagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttg 185
|||||||||||||| ||||||| |||| | | ||||||| |||||||| ||||||
Sbjct: 141 aagctcttctttgctatttgggtcattgcccatttgtatcctttcctcaagggtttg 197
>gb|CV130875.1|CV130875 X9SP07b02 Populus stem seasonal library Populus deltoides cDNA,
mRNA sequence
Length = 882
Score = 48.1 bits (24), Expect = 2e-004
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 129 aagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttg 185
|||||||||||||| ||||||| |||| | | ||||||| |||||||| ||||||
Sbjct: 700 aagctcttctttgctatttgggtcattgcccatttgtatcctttcctcaagggtttg 756
>gb|CV252662.1|CV252662 PX0015.B21_I21 PT-X-FL-A-1 Populus trichocarpa cDNA clone
PX0015_I21 3', mRNA sequence
Length = 667
Score = 48.1 bits (24), Expect = 2e-004
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 129 aagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttg 185
|||||||||||||| ||||||| |||| | | ||||||| |||||||| ||||||
Sbjct: 643 aagctcttctttgctatttgggtcattgcccatttgtatcctttcctcaagggtttg 587
>gb|CV262834.1|CV262834 WS0202.B21_K05 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0202_K05 3', mRNA sequence
Length = 513
Score = 48.1 bits (24), Expect = 2e-004
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 129 aagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttg 185
|||||||||||||| ||||||| |||| | | ||||||| |||||||| ||||||
Sbjct: 428 aagctcttctttgctatttgggtcattgcccatttgtatcctttcctcaagggtttg 372
>gb|CV282433.1|CV282433 WS0184.B21_J19 PTxD-IL-N-A-9 Populus trichocarpa x Populus
deltoides cDNA clone WS0184_J19 3', mRNA sequence
Length = 573
Score = 48.1 bits (24), Expect = 2e-004
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 129 aagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttg 185
|||||||||||||| ||||||| |||| | | ||||||| |||||||| ||||||
Sbjct: 425 aagctcttctttgctatttgggtcattgcccatttgtatcctttcctcaagggtttg 369
>gb|DT493063.1|DT493063 WS02553.C21_E11 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02553_E11 3', mRNA sequence
Length = 774
Score = 48.1 bits (24), Expect = 2e-004
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 129 aagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttg 185
|||||||||||||| ||||||| |||| | | ||||||| |||||||| ||||||
Sbjct: 473 aagctcttctttgctatttgggtcattgcccatttgtatcctttcctcaagggtttg 417
>gb|DT500468.1|DT500468 PX0015.BR_I21 PT-X-FL-A-1 Populus trichocarpa cDNA clone PX0015_I21
5', mRNA sequence
Length = 687
Score = 48.1 bits (24), Expect = 2e-004
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 129 aagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttg 185
|||||||||||||| ||||||| |||| | | ||||||| |||||||| ||||||
Sbjct: 323 aagctcttctttgctatttgggtcattgcccatttgtatcctttcctcaagggtttg 379
>gb|AY162181.1| Populus tremuloides cellulose synthase (CesA4) mRNA, complete cds
Length = 3640
Score = 48.1 bits (24), Expect = 2e-004
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 129 aagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttg 185
|||||||||||||| ||||||| |||| | | ||||||| |||||||| ||||||
Sbjct: 3079 aagctcttctttgctatttgggtcattgcccatttgtatcctttcctcaagggtttg 3135
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 27,392
Number of Sequences: 369679
Number of extensions: 27392
Number of successful extensions: 7888
Number of sequences better than 0.5: 62
Number of HSP's better than 0.5 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7819
Number of HSP's gapped (non-prelim): 69
length of query: 290
length of database: 203,408,664
effective HSP length: 18
effective length of query: 272
effective length of database: 196,754,442
effective search space: 53517208224
effective search space used: 53517208224
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)