BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAD4g02.sg.2.1
(308 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI126652.1|BI126652 I078P42P Populus leaf cDNA library P... 44 0.003
gb|BU821493.1|BU821493 UB23CPH06 Populus tremula cambium cD... 44 0.003
gb|CK096710.1|CK096710 UB23CPH06.3pR Populus active cambium... 44 0.003
gb|CV226133.1|CV226133 WS0163.B21_G06 PT-DX-A-7 Populus tri... 44 0.003
gb|CV241642.1|CV241642 WS02512.B21_N02 PT-MB-N-A-15 Populus... 44 0.003
gb|DT491082.1|DT491082 WS02546.C21.1_M06 PT-MB-N-A-15 Popul... 44 0.003
gb|DT507619.1|DT507619 WS02418.BR_M05 PTxD-ICC-N-A-14 Popul... 44 0.003
gb|DT512247.1|DT512247 WS02418.B21_M05 PTxD-ICC-N-A-14 Popu... 44 0.003
gb|DT517135.1|DT517135 WS02433.B21_G17 PTxD-ICC-N-A-14 Popu... 44 0.003
gb|CV272259.1|CV272259 WS0157.B21_C03 PTxN-IB-A-6 Populus t... 42 0.012
gb|DT508237.1|DT508237 WS02420.BR_G22 PTxD-ICC-N-A-14 Popul... 42 0.012
gb|DT512853.1|DT512853 WS02420.B21_G22 PTxD-ICC-N-A-14 Popu... 42 0.012
gb|DT517537.1|DT517537 WS02434.B21_J11 PTxD-ICC-N-A-14 Popu... 42 0.012
gb|DV463802.1|DV463802 MTUNUL1.P2.F01 NUL Populus fremontii... 42 0.012
gb|CV244248.1|CV244248 WS0254.B21_C07 PT-MB-N-A-15 Populus ... 38 0.19
gb|CX181129.1|CX181129 C04_45-95_06.ab1 leaf inoculated wit... 38 0.19
gb|BP930850.1|BP930850 BP930850 full-length enriched poplar... 38 0.19
gb|DN502039.1|DN502039 V046C01.5pR Populus male catkins cDN... 38 0.19
gb|DT492486.1|DT492486 WS02550.C21_N20 PT-MB-N-A-15 Populus... 38 0.19
gb|DT505258.1|DT505258 WS01810.C21_H02 PTxD-IL-N-A-9 Populu... 38 0.19
>gb|BI126652.1|BI126652 I078P42P Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 527
Score = 44.1 bits (22), Expect = 0.003
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 84 ccaacagcgacttgctgcacgtagggcatcaggttgtt 121
|||||||| ||||||||||| |||||||| || |||||
Sbjct: 82 ccaacagcaacttgctgcacatagggcatgagattgtt 45
>gb|BU821493.1|BU821493 UB23CPH06 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 473
Score = 44.1 bits (22), Expect = 0.003
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 84 ccaacagcgacttgctgcacgtagggcatcaggttgtt 121
|||||||| ||||||||||| |||||||| || |||||
Sbjct: 288 ccaacagcaacttgctgcacatagggcatgagattgtt 251
>gb|CK096710.1|CK096710 UB23CPH06.3pR Populus active cambium cDNA library Populus tremula
cDNA clone UB23CPH06 3', mRNA sequence
Length = 875
Score = 44.1 bits (22), Expect = 0.003
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 84 ccaacagcgacttgctgcacgtagggcatcaggttgtt 121
|||||||| ||||||||||| |||||||| || |||||
Sbjct: 644 ccaacagcaacttgctgcacatagggcatgagattgtt 681
>gb|CV226133.1|CV226133 WS0163.B21_G06 PT-DX-A-7 Populus trichocarpa cDNA clone WS0163_G06
3', mRNA sequence
Length = 918
Score = 44.1 bits (22), Expect = 0.003
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 84 ccaacagcgacttgctgcacgtagggcatcaggttgtt 121
|||||||| ||||||||||| |||||||| || |||||
Sbjct: 667 ccaacagcaacttgctgcacatagggcatgagattgtt 704
>gb|CV241642.1|CV241642 WS02512.B21_N02 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02512_N02 3', mRNA sequence
Length = 735
Score = 44.1 bits (22), Expect = 0.003
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 84 ccaacagcgacttgctgcacgtagggcatcaggttgtt 121
|||||||| ||||||||||| |||||||| || |||||
Sbjct: 698 ccaacagcaacttgctgcacatagggcatgagattgtt 735
>gb|DT491082.1|DT491082 WS02546.C21.1_M06 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02546_M06 3', mRNA sequence
Length = 922
Score = 44.1 bits (22), Expect = 0.003
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 84 ccaacagcgacttgctgcacgtagggcatcaggttgtt 121
|||||||| ||||||||||| |||||||| || |||||
Sbjct: 700 ccaacagcaacttgctgcacatagggcatgagattgtt 737
>gb|DT507619.1|DT507619 WS02418.BR_M05 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02418_M05 5', mRNA sequence
Length = 833
Score = 44.1 bits (22), Expect = 0.003
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 84 ccaacagcgacttgctgcacgtagggcatcaggttgtt 121
|||||||| ||||||||||| |||||||| || |||||
Sbjct: 705 ccaacagcaacttgctgcacatagggcatgagattgtt 668
>gb|DT512247.1|DT512247 WS02418.B21_M05 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02418_M05 3', mRNA sequence
Length = 914
Score = 44.1 bits (22), Expect = 0.003
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 84 ccaacagcgacttgctgcacgtagggcatcaggttgtt 121
|||||||| ||||||||||| |||||||| || |||||
Sbjct: 658 ccaacagcaacttgctgcacatagggcatgagattgtt 695
>gb|DT517135.1|DT517135 WS02433.B21_G17 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02433_G17 3', mRNA sequence
Length = 881
Score = 44.1 bits (22), Expect = 0.003
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 84 ccaacagcgacttgctgcacgtagggcatcaggttgtt 121
|||||||| ||||||||||| |||||||| || |||||
Sbjct: 655 ccaacagcaacttgctgcacatagggcatgagattgtt 692
>gb|CV272259.1|CV272259 WS0157.B21_C03 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0157_C03 3', mRNA sequence
Length = 696
Score = 42.1 bits (21), Expect = 0.012
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 84 ccaacagcgacttgctgcacgtagggcat 112
|||||||| ||||||||||| ||||||||
Sbjct: 667 ccaacagcaacttgctgcacatagggcat 695
>gb|DT508237.1|DT508237 WS02420.BR_G22 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02420_G22 5', mRNA sequence
Length = 882
Score = 42.1 bits (21), Expect = 0.012
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 84 ccaacagcgacttgctgcacgtagggcat 112
|||||||| ||||||||||| ||||||||
Sbjct: 344 ccaacagcaacttgctgcacatagggcat 316
>gb|DT512853.1|DT512853 WS02420.B21_G22 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02420_G22 3', mRNA sequence
Length = 922
Score = 42.1 bits (21), Expect = 0.012
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 84 ccaacagcgacttgctgcacgtagggcat 112
|||||||| ||||||||||| ||||||||
Sbjct: 628 ccaacagcaacttgctgcacatagggcat 656
>gb|DT517537.1|DT517537 WS02434.B21_J11 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02434_J11 3', mRNA sequence
Length = 794
Score = 42.1 bits (21), Expect = 0.012
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 84 ccaacagcgacttgctgcacgtagggcat 112
|||||||| ||||||||||| ||||||||
Sbjct: 640 ccaacagcaacttgctgcacatagggcat 668
>gb|DV463802.1|DV463802 MTUNUL1.P2.F01 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 593
Score = 42.1 bits (21), Expect = 0.012
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 85 caacagcgacttgctgcacgtagggcatcaggttgtt 121
||||||| ||||||||||| |||||||| || |||||
Sbjct: 593 caacagcaacttgctgcacatagggcatgagattgtt 557
>gb|CV244248.1|CV244248 WS0254.B21_C07 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0254_C07 3', mRNA sequence
Length = 582
Score = 38.2 bits (19), Expect = 0.19
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 3 acaacgtggatgtaatcacgcaccccagtcccatc 37
||||| || ||||||||||| |||||||| |||||
Sbjct: 513 acaacatgaatgtaatcacgtaccccagtgccatc 547
>gb|CX181129.1|CX181129 C04_45-95_06.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 738
Score = 38.2 bits (19), Expect = 0.19
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 161 atgagcgccaacggggttgaagtacct 187
|||||| || |||||||||||||||||
Sbjct: 623 atgagctcccacggggttgaagtacct 597
>gb|BP930850.1|BP930850 BP930850 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-015_L21.r 3', mRNA sequence
Length = 574
Score = 38.2 bits (19), Expect = 0.19
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 3 acaacgtggatgtaatcacgcaccccagtcccatc 37
||||| || ||||||||||| |||||||| |||||
Sbjct: 526 acaacatgaatgtaatcacgtaccccagtgccatc 560
>gb|DN502039.1|DN502039 V046C01.5pR Populus male catkins cDNA library Populus trichocarpa
cDNA clone V046C01 5', mRNA sequence
Length = 797
Score = 38.2 bits (19), Expect = 0.19
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 161 atgagcgccaacggggttgaagtacct 187
|||||| || |||||||||||||||||
Sbjct: 686 atgagctcccacggggttgaagtacct 660
>gb|DT492486.1|DT492486 WS02550.C21_N20 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02550_N20 3', mRNA sequence
Length = 807
Score = 38.2 bits (19), Expect = 0.19
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 161 atgagcgccaacggggttgaagtacct 187
|||||| || |||||||||||||||||
Sbjct: 724 atgagctcccacggggttgaagtacct 750
>gb|DT505258.1|DT505258 WS01810.C21_H02 PTxD-IL-N-A-9 Populus trichocarpa x Populus
deltoides cDNA clone WS01810_H02 3', mRNA sequence
Length = 935
Score = 38.2 bits (19), Expect = 0.19
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 161 atgagcgccaacggggttgaagtacct 187
|||||| || |||||||||||||||||
Sbjct: 754 atgagctcccacggggttgaagtacct 780
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 19,802
Number of Sequences: 369679
Number of extensions: 19802
Number of successful extensions: 4784
Number of sequences better than 0.5: 20
Number of HSP's better than 0.5 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4732
Number of HSP's gapped (non-prelim): 52
length of query: 308
length of database: 203,408,664
effective HSP length: 18
effective length of query: 290
effective length of database: 196,754,442
effective search space: 57058788180
effective search space used: 57058788180
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)