BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAD15f02.sg.3.2
(2357 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU879545.1|BU879545 V061E07 Populus flower cDNA library ... 54 3e-005
gb|DT510045.1|DT510045 WS02425.BR_H01 PTxD-ICC-N-A-14 Popul... 54 3e-005
gb|DV462942.1|DV462942 MTUNUL1.P1.F10 NUL Populus fremontii... 54 3e-005
gb|BU862292.1|BU862292 S013G08 Populus imbibed seed cDNA li... 52 1e-004
gb|AJ769940.1|AJ769940 AJ769940 Populus euphratica leaf 3-6... 46 0.006
gb|CX170124.1|CX170124 E10_96-105_10.ab1 leaf inoculated wi... 46 0.006
gb|CX176767.1|CX176767 F12_69-47_12.ab1 leaf inoculated wit... 46 0.006
gb|BI073052.1|BI073052 C092P21U Populus strain T89 leaves P... 44 0.024
gb|CN517930.1|CN517930 GQ0092.B3_L17 GQ009 Populus trichoca... 44 0.024
gb|CX172797.1|CX172797 E03_69-28_09.ab1 leaf inoculated wit... 44 0.024
gb|BU884150.1|BU884150 R006F02 Populus root cDNA library Po... 42 0.096
gb|CK107100.1|CK107100 UB46DPE11.5pR Populus active cambium... 42 0.096
gb|BU822997.1|BU822997 UB46DPE11 Populus tremula cambium cD... 40 0.38
>gb|BU879545.1|BU879545 V061E07 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 667
Score = 54.0 bits (27), Expect = 3e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 451 gatgattatcacatgatgttaaggttcctaaaagcacggaaatttga 497
||||||||||| |||||||| |||||| | |||||| ||||||||||
Sbjct: 469 gatgattatcatatgatgttgaggttcttgaaagcaaggaaatttga 515
>gb|DT510045.1|DT510045 WS02425.BR_H01 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02425_H01 5', mRNA sequence
Length = 791
Score = 54.0 bits (27), Expect = 3e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 451 gatgattatcacatgatgttaaggttcctaaaagcacggaaatttga 497
||||| ||||| ||||||||||||||| | |||||| ||||||||||
Sbjct: 634 gatgactatcatatgatgttaaggttcttgaaagcaaggaaatttga 680
>gb|DV462942.1|DV462942 MTUNUL1.P1.F10 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 775
Score = 54.0 bits (27), Expect = 3e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 451 gatgattatcacatgatgttaaggttcctaaaagcacggaaatttga 497
||||| ||||| ||||||||||||||| | |||||| ||||||||||
Sbjct: 637 gatgactatcatatgatgttaaggttcttgaaagcaaggaaatttga 683
>gb|BU862292.1|BU862292 S013G08 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 694
Score = 52.0 bits (26), Expect = 1e-004
Identities = 71/86 (82%)
Strand = Plus / Plus
Query: 766 tttccagcttgcaccattgctgctaaaaagcacatagattcgtccactactattttggat 825
||||||||||| || |||||||| || | ||| |||||||| ||| |||||||| |||
Sbjct: 125 tttccagcttgtactattgctgcaaagaggcatatagattcaagcacaactattttagat 184
Query: 826 gtgcaaggcgtgggtttcaagaactt 851
|| || |||||||| ||||||||||
Sbjct: 185 gttcatggcgtgggactcaagaactt 210
>gb|AJ769940.1|AJ769940 AJ769940 Populus euphratica leaf 3-6 months, adult Populus euphratica
cDNA clone P0001100004G10F1, mRNA sequence
Length = 310
Score = 46.1 bits (23), Expect = 0.006
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1280 ctgccgagtctggatctgaagtggaagatgt 1310
|||| ||||| ||||||||||||||||||||
Sbjct: 195 ctgcagagtcaggatctgaagtggaagatgt 225
>gb|CX170124.1|CX170124 E10_96-105_10.ab1 leaf inoculated with Marssonia pathogen of
Populus deltoides Populus deltoides cDNA, mRNA sequence
Length = 622
Score = 46.1 bits (23), Expect = 0.006
Identities = 42/47 (89%), Gaps = 1/47 (2%)
Strand = Plus / Plus
Query: 451 gatgattatcacatgatgttaaggttcctaaaagcacggaaatttga 497
||||||||||| |||||||| |||||| | |||||| ||||||||||
Sbjct: 568 gatgattatcatatgatgttgaggttcttgaaagca-ggaaatttga 613
>gb|CX176767.1|CX176767 F12_69-47_12.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 679
Score = 46.1 bits (23), Expect = 0.006
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1280 ctgccgagtctggatctgaagtggaagatgt 1310
|||| ||||| ||||||||||||||||||||
Sbjct: 100 ctgcagagtcaggatctgaagtggaagatgt 130
>gb|BI073052.1|BI073052 C092P21U Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 380
Score = 44.1 bits (22), Expect = 0.024
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 814 actattttggatgtgcaaggcgtggg 839
|||||||||||||||||||| |||||
Sbjct: 168 actattttggatgtgcaaggagtggg 193
>gb|CN517930.1|CN517930 GQ0092.B3_L17 GQ009 Populus trichocarpa x Populus deltoides cDNA
clone GQ0092_L17 5', mRNA sequence
Length = 585
Score = 44.1 bits (22), Expect = 0.024
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 814 actattttggatgtgcaaggcgtgggtttcaagaactt 851
|||||||| ||||| ||||||||||| ||||||||||
Sbjct: 23 actattttagatgttcaaggcgtgggcctcaagaactt 60
>gb|CX172797.1|CX172797 E03_69-28_09.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 671
Score = 44.1 bits (22), Expect = 0.024
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 451 gatgattatcacatgatgttaaggttcctaaaagcacggaaatttg 496
||||| ||||| ||||||||||||||| | ||||| |||||||||
Sbjct: 626 gatgactatcatatgatgttaaggttcttggaagcaaggaaatttg 671
>gb|BU884150.1|BU884150 R006F02 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 711
Score = 42.1 bits (21), Expect = 0.096
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1009 aagatccatgttcttgggaataagtatca 1037
||||||||||||||||| || ||||||||
Sbjct: 65 aagatccatgttcttggcaacaagtatca 93
>gb|CK107100.1|CK107100 UB46DPE11.5pR Populus active cambium cDNA library Populus tremula
cDNA clone UB46DPE11 5', mRNA sequence
Length = 669
Score = 42.1 bits (21), Expect = 0.096
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 623 atcatggagtagataaagagggaagacctgtatacatagaa 663
||||||| || ||||||||||| |||||||| || ||||||
Sbjct: 418 atcatggtgtggataaagaggggagacctgtttatatagaa 458
>gb|BU822997.1|BU822997 UB46DPE11 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 483
Score = 40.1 bits (20), Expect = 0.38
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 623 atcatggagtagataaagagggaagacctgtatacataga 662
||||||| || ||||||||||| |||||||| || |||||
Sbjct: 407 atcatggtgtggataaagaggggagacctgtttatataga 446
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 287,627
Number of Sequences: 369679
Number of extensions: 287627
Number of successful extensions: 84930
Number of sequences better than 0.5: 13
Number of HSP's better than 0.5 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84910
Number of HSP's gapped (non-prelim): 20
length of query: 2357
length of database: 203,408,664
effective HSP length: 20
effective length of query: 2337
effective length of database: 196,015,084
effective search space: 458087251308
effective search space used: 458087251308
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)