BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= F5H
(1360 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI784504.1|BI784504 UNIAB20P05X Hybrid aspen plasmid lib... 115 5e-024
gb|BI784506.1|BI784506 UNIAB21P33X Hybrid aspen plasmid lib... 113 2e-023
gb|AJ534481.1|AJ534481 AJ534481 Populus euphratica root and... 101 7e-020
gb|AI162760.1|AI162760 A023P29U Hybrid aspen plasmid librar... 90 3e-016
gb|CF234324.1|CF234324 Ptajxojxo1B5B0503 Poplar cDNA librar... 90 3e-016
gb|CK318664.1|CK318664 X9P01h09 Populus stem seasonal libra... 88 1e-015
emb|AJ010324.1|PAJ10324 Populus trichocarpa cv trichobel mR... 88 1e-015
gb|BI784499.1|BI784499 UNIAB10P07X Hybrid aspen plasmid lib... 86 4e-015
gb|BI137597.1|BI137597 F089P12Y Populus flower cDNA library... 84 2e-014
gb|AI166206.1|AI166206 a033p77u Hybrid aspen plasmid librar... 80 3e-013
gb|CF216211.1|CF216211 PT1026 Hybrid aspen xylem up-regulat... 80 3e-013
gb|AJ769266.1|AJ769266 AJ769266 Populus euphratica leaf adu... 80 3e-013
gb|CF227381.1|CF227381 PtaD4A12B0503 Poplar cDNA library fr... 78 1e-012
emb|AJ416708.1|PDE416708 Populus deltoides MER locus, genom... 78 1e-012
gb|AJ769292.1|AJ769292 AJ769292 Populus euphratica leaf adu... 76 4e-012
emb|AJ297290.1|PNI297290 Populus nigra microsatellite DNA, ... 76 4e-012
gb|BU895083.1|BU895083 X019A12 Populus wood cDNA library Po... 74 2e-011
gb|CK117065.1|CK117065 B026P69 Hybrid aspen plasmid library... 64 2e-008
gb|AJ769249.1|AJ769249 AJ769249 Populus euphratica leaf adu... 64 2e-008
gb|AJ534493.1|AJ534493 AJ534493 Populus euphratica root and... 62 6e-008
gb|AJ777947.1|AJ777947 AJ777947 Populus euphratica root 3-6... 62 6e-008
emb|AJ297281.1|PNI297281 Populus nigra microsatellite DNA, ... 54 1e-005
gb|CX653726.1|CX653726 PO02006B09 Poplar SC cDNA library Po... 52 6e-005
gb|BI129575.1|BI129575 G092P68Y Populus cambium cDNA librar... 50 2e-004
gb|CX653459.1|CX653459 PO02002C02 Poplar SC cDNA library Po... 50 2e-004
gb|CX654266.1|CX654266 PO02016E10 Poplar SC cDNA library Po... 48 9e-004
gb|CX656198.1|CX656198 PO02048F07 Poplar SC cDNA library Po... 48 9e-004
gb|CX654145.1|CX654145 PO02013G08 Poplar SC cDNA library Po... 46 0.004
gb|CX655984.1|CX655984 PO02044A11 Poplar SC cDNA library Po... 46 0.004
gb|CX656234.1|CX656234 PO02049D02 Poplar SC cDNA library Po... 46 0.004
gb|CX656279.1|CX656279 PO02052A08 Poplar SC cDNA library Po... 46 0.004
gb|CX657539.1|CX657539 PO02052B12 Poplar SC cDNA library Po... 46 0.004
gb|BI129510.1|BI129510 G091P68Y Populus cambium cDNA librar... 44 0.014
gb|CK090915.1|CK090915 F031P53.3pR Populus flower cDNA libr... 44 0.014
gb|CX654535.1|CX654535 PO02012F09 Poplar SC cDNA library Po... 44 0.014
gb|CX657139.1|CX657139 PO02030F08 Poplar SC cDNA library Po... 44 0.014
gb|CX657291.1|CX657291 PO02039C05 Poplar SC cDNA library Po... 44 0.014
gb|CX657399.1|CX657399 PO02044H10 Poplar SC cDNA library Po... 44 0.014
gb|DN503555.1|DN503555 G091P68 Populus tension wood cDNA li... 44 0.014
gb|CF216275.1|CF216275 PT1096 Hybrid aspen xylem up-regulat... 42 0.055
gb|CV274060.1|CV274060 WS0172.B21_B03 PTxD-NR-A-8 Populus t... 42 0.055
gb|CX654770.1|CX654770 PO02059D12 Poplar SC cDNA library Po... 42 0.055
gb|CX654842.1|CX654842 PO02060E04 Poplar SC cDNA library Po... 42 0.055
gb|CX655925.1|CX655925 PO02043A08 Poplar SC cDNA library Po... 42 0.055
gb|CX657382.1|CX657382 PO02044B05 Poplar SC cDNA library Po... 42 0.055
gb|CN518888.1|CN518888 GQ0104.B3_G14 GQ010 Populus trichoca... 40 0.22
gb|AJ769267.1|AJ769267 AJ769267 Populus euphratica leaf adu... 40 0.22
gb|AJ769314.1|AJ769314 AJ769314 Populus euphratica leaf adu... 40 0.22
gb|CX655784.1|CX655784 PO02040A05 Poplar SC cDNA library Po... 40 0.22
gb|CX656924.1|CX656924 PO02028D09 Poplar SC cDNA library Po... 40 0.22
gb|CX657445.1|CX657445 PO02046F08 Poplar SC cDNA library Po... 40 0.22
gb|CX657519.1|CX657519 PO02049D07 Poplar SC cDNA library Po... 40 0.22
gb|AI166854.1|AI166854 xylem.est.645 Poplar xylem Lambda ZA... 38 0.86
gb|BI136919.1|BI136919 F076P70Y Populus flower cDNA library... 38 0.86
gb|CN192518.1|CN192518 PtdH1010 hybrid poplar systemically ... 38 0.86
gb|CN521902.1|CN521902 GQ0124.B3_J20 GQ012 Populus trichoca... 38 0.86
gb|AJ780694.1|AJ780694 AJ780694 Populus euphratica leaf 3-6... 38 0.86
gb|CV266787.1|CV266787 WS0203.B21_P17 PTxN-IB-N-A-11 Populu... 38 0.86
gb|CX653587.1|CX653587 PO02004B10 Poplar SC cDNA library Po... 38 0.86
gb|CX654572.1|CX654572 PO02015C03 Poplar SC cDNA library Po... 38 0.86
gb|CX654821.1|CX654821 PO02060B03 Poplar SC cDNA library Po... 38 0.86
gb|CX655255.1|CX655255 PO02032B05 Poplar SC cDNA library Po... 38 0.86
gb|CX655983.1|CX655983 PO02044A05 Poplar SC cDNA library Po... 38 0.86
gb|CX656125.1|CX656125 PO02047C01 Poplar SC cDNA library Po... 38 0.86
gb|CX656139.1|CX656139 PO02047E06 Poplar SC cDNA library Po... 38 0.86
gb|CX656325.1|CX656325 PO02053C11 Poplar SC cDNA library Po... 38 0.86
gb|CX657738.1|CX657738 PO02028F10 Poplar SC cDNA library Po... 38 0.86
gb|BP923283.1|BP923283 BP923283 full-length enriched poplar... 38 0.86
gb|BP923777.1|BP923777 BP923777 full-length enriched poplar... 38 0.86
gb|BP923874.1|BP923874 BP923874 full-length enriched poplar... 38 0.86
gb|BP928397.1|BP928397 BP928397 full-length enriched poplar... 38 0.86
gb|BI121504.1|BI121504 F038P34Y Populus flower cDNA library... 36 3.4
gb|BI131481.1|BI131481 G121P52Y Populus cambium cDNA librar... 36 3.4
gb|BI138621.1|BI138621 F111P02Y Populus flower cDNA library... 36 3.4
gb|BI138649.1|BI138649 F112P07Y Populus flower cDNA library... 36 3.4
gb|BI138871.1|BI138871 F118P12Y Populus flower cDNA library... 36 3.4
gb|BU816548.1|BU816548 N066E08 Populus bark cDNA library Po... 36 3.4
gb|BU827582.1|BU827582 K005P03P Populus apical shoot cDNA l... 36 3.4
gb|BU830828.1|BU830828 T013F08 Populus apical shoot cDNA li... 36 3.4
gb|BU831829.1|BU831829 T026C05 Populus apical shoot cDNA li... 36 3.4
gb|BU835032.1|BU835032 T068F12 Populus apical shoot cDNA li... 36 3.4
gb|BU837400.1|BU837400 T101D05 Populus apical shoot cDNA li... 36 3.4
gb|BU837431.1|BU837431 T101G04 Populus apical shoot cDNA li... 36 3.4
gb|BU837455.1|BU837455 T102A07 Populus apical shoot cDNA li... 36 3.4
gb|CA929951.1|CA929951 MTU2CA.P4.H12 Aspen apex cDNA Librar... 36 3.4
gb|CA929998.1|CA929998 MTU2CA.P5.F12 Aspen apex cDNA Librar... 36 3.4
gb|CK090121.1|CK090121 C066P09.3pR Populus strain T89 leave... 36 3.4
gb|CK091337.1|CK091337 F080P64.3pR Populus flower cDNA libr... 36 3.4
gb|CV240869.1|CV240869 WS02510.B21_J06 PT-MB-N-A-15 Populus... 36 3.4
gb|CV245414.1|CV245414 WS0257.B21_F16 PT-MB-N-A-15 Populus ... 36 3.4
gb|CX653710.1|CX653710 PO02005H05 Poplar SC cDNA library Po... 36 3.4
gb|CX655479.1|CX655479 PO02035D05 Poplar SC cDNA library Po... 36 3.4
gb|CX655858.1|CX655858 PO02041B03 Poplar SC cDNA library Po... 36 3.4
gb|CX656264.1|CX656264 PO02051D02 Poplar SC cDNA library Po... 36 3.4
gb|CX656285.1|CX656285 PO02052B06 Poplar SC cDNA library Po... 36 3.4
gb|CX656375.1|CX656375 PO02054C08 Poplar SC cDNA library Po... 36 3.4
gb|CX657344.1|CX657344 PO02042E11 Poplar SC cDNA library Po... 36 3.4
gb|DN495618.1|DN495618 N066E08.5pR Populus bark cDNA librar... 36 3.4
gb|DT470499.1|DT470499 WS0121.BR_B17 PT-GT-FL-A-3 Populus t... 36 3.4
gb|DT476267.1|DT476267 WS01228.B21_O24 PT-GT-FL-A-3 Populus... 36 3.4
gb|DT478800.1|DT478800 WS02523.BR_N13 PT-MB-N-A-15 Populus ... 36 3.4
gb|DT480778.1|DT480778 WS02529.BR_O10 PT-MB-N-A-15 Populus ... 36 3.4
gb|DT483887.1|DT483887 WS02523.B21_N13 PT-MB-N-A-15 Populus... 36 3.4
gb|DT486052.1|DT486052 WS02529.B21_O10 PT-MB-N-A-15 Populus... 36 3.4
gb|DT488443.1|DT488443 WS02536.B21_H04 PT-MB-N-A-15 Populus... 36 3.4
gb|DT491094.1|DT491094 WS02546.C21.1_M18 PT-MB-N-A-15 Popul... 36 3.4
gb|DV463037.1|DV463037 MTUNUL1.P10.H06 NUL Populus fremonti... 36 3.4
gb|DV466541.1|DV466541 MTUNUL1.P7.A04 NUL Populus fremontii... 36 3.4
>gb|BI784504.1|BI784504 UNIAB20P05X Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 253
Score = 115 bits (58), Expect = 5e-024
Identities = 58/58 (100%)
Strand = Plus / Minus
Query: 1 ctccaccgcggtggcggccgctctagaactagtggatcccccgggctgcaggaattcg 58
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 ctccaccgcggtggcggccgctctagaactagtggatcccccgggctgcaggaattcg 58
>gb|BI784506.1|BI784506 UNIAB21P33X Hybrid aspen plasmid library Populus tremula x
Populus tremuloides cDNA 5', mRNA sequence
Length = 94
Score = 113 bits (57), Expect = 2e-023
Identities = 57/57 (100%)
Strand = Plus / Minus
Query: 1 ctccaccgcggtggcggccgctctagaactagtggatcccccgggctgcaggaattc 57
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84 ctccaccgcggtggcggccgctctagaactagtggatcccccgggctgcaggaattc 28
>gb|AJ534481.1|AJ534481 AJ534481 Populus euphratica root and shoot Populus euphratica cDNA
clone 46, mRNA sequence
Length = 574
Score = 101 bits (51), Expect = 7e-020
Identities = 56/58 (96%)
Strand = Plus / Minus
Query: 1 ctccaccgcggtggcggccgctctagaactagtggatcccccgggctgcaggaattcg 58
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ctccaccgcggtggctnccgctctagaactagtggatcccccgggctgcaggaattcg 505
>gb|AI162760.1|AI162760 A023P29U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 208
Score = 89.7 bits (45), Expect = 3e-016
Identities = 45/45 (100%)
Strand = Plus / Minus
Query: 14 gcggccgctctagaactagtggatcccccgggctgcaggaattcg 58
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gcggccgctctagaactagtggatcccccgggctgcaggaattcg 164
>gb|CF234324.1|CF234324 Ptajxojxo1B5B0503 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 704
Score = 89.7 bits (45), Expect = 3e-016
Identities = 71/80 (88%)
Strand = Plus / Plus
Query: 518 gacaatatcaaggctatcatcatggacgtgatgtttggcgggacggagacggtggcgtcg 577
||||| ||||| || ||||||||||| ||||||||||| ||||||||||| |||||||||
Sbjct: 179 gacaacatcaaagccatcatcatggatgtgatgtttggngggacggagacagtggcgtcg 238
Query: 578 gcgatcgagtgggcgatggc 597
|| || |||||||| |||||
Sbjct: 239 gctatagagtgggccatggc 258
Score = 36.2 bits (18), Expect = 3.4
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 635 cagcaggagctcgccgacgtcgtggg 660
||||| |||||||||||||| |||||
Sbjct: 296 cagcaagagctcgccgacgtggtggg 321
>gb|CK318664.1|CK318664 X9P01h09 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 726
Score = 87.7 bits (44), Expect = 1e-015
Identities = 74/84 (88%)
Strand = Plus / Plus
Query: 518 gacaatatcaaggctatcatcatggacgtgatgtttggcgggacggagacggtggcgtcg 577
||||| ||||| ||||| |||||||| ||||||||||| ||||| ||||||||||| |||
Sbjct: 444 gacaacatcaaagctataatcatggatgtgatgtttggtgggacagagacggtggcttcg 503
Query: 578 gcgatcgagtgggcgatggcggag 601
|| || |||||||| |||||||||
Sbjct: 504 gcaatagagtgggccatggcggag 527
>emb|AJ010324.1|PAJ10324 Populus trichocarpa cv trichobel mRNA for ferulate-5-hydroxylase
Length = 1873
Score = 87.7 bits (44), Expect = 1e-015
Identities = 71/80 (88%)
Strand = Plus / Plus
Query: 518 gacaatatcaaggctatcatcatggacgtgatgtttggcgggacggagacggtggcgtcg 577
||||| ||||| || ||||||||||| ||||||||||| ||||||||||| |||||||||
Sbjct: 954 gacaacatcaaagccatcatcatggatgtgatgtttggtgggacggagacagtggcgtcg 1013
Query: 578 gcgatcgagtgggcgatggc 597
|| || |||||||| |||||
Sbjct: 1014 gctatagagtgggccatggc 1033
>gb|BI784499.1|BI784499 UNIAB10P07X Hybrid aspen plasmid library Populus tremula x
Populus tremuloides cDNA 5', mRNA sequence
Length = 182
Score = 85.7 bits (43), Expect = 4e-015
Identities = 57/59 (96%), Gaps = 2/59 (3%)
Strand = Plus / Minus
Query: 1 ctccaccgcggtggcggccgctctagaacta-gtggatcccccgggctgcaggaattcg 58
||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 64 ctccaccgcggtggcggcc-ctctagaactacgtggatcccccgggctgcaggaattcg 7
>gb|BI137597.1|BI137597 F089P12Y Populus flower cDNA library Populus trichocarpa cDNA,
mRNA sequence
Length = 329
Score = 83.8 bits (42), Expect = 2e-014
Identities = 49/50 (98%), Gaps = 1/50 (2%)
Strand = Plus / Plus
Query: 15 cggccgctctagaactagtggatcccccgggctgcaggaattcggcacga 64
|||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1 cggccgctctagaactagtggatcccccgggctgcagg-attcggcacga 49
>gb|AI166206.1|AI166206 a033p77u Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 304
Score = 79.8 bits (40), Expect = 3e-013
Identities = 70/80 (87%)
Strand = Plus / Plus
Query: 518 gacaatatcaaggctatcatcatggacgtgatgtttggcgggacggagacggtggcgtcg 577
||||| ||||| || ||||||||||| ||||||||||| ||||| ||||| |||||||||
Sbjct: 118 gacaacatcaaagcaatcatcatggatgtgatgtttggtgggacagagacagtggcgtcg 177
Query: 578 gcgatcgagtgggcgatggc 597
|| || |||||||| |||||
Sbjct: 178 gcaatagagtgggccatggc 197
Score = 36.2 bits (18), Expect = 3.4
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 635 cagcaggagctcgccgacgtcgtggg 660
||||| |||||||||||||| |||||
Sbjct: 235 cagcaagagctcgccgacgtggtggg 260
>gb|CF216211.1|CF216211 PT1026 Hybrid aspen xylem up-regulated Populus alba x Populus
tremula cDNA clone PT1026, mRNA sequence
Length = 352
Score = 79.8 bits (40), Expect = 3e-013
Identities = 70/80 (87%)
Strand = Plus / Plus
Query: 518 gacaatatcaaggctatcatcatggacgtgatgtttggcgggacggagacggtggcgtcg 577
||||| ||||| || ||||||||||| ||||||||||| ||||| ||||| |||||||||
Sbjct: 148 gacaacatcaaagccatcatcatggatgtgatgtttggtgggacagagacagtggcgtcg 207
Query: 578 gcgatcgagtgggcgatggc 597
|| || |||||||| |||||
Sbjct: 208 gctatagagtgggccatggc 227
Score = 36.2 bits (18), Expect = 3.4
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 635 cagcaggagctcgccgacgtcgtggg 660
||||| |||||||||||||| |||||
Sbjct: 265 cagcaagagctcgccgacgtggtggg 290
>gb|AJ769266.1|AJ769266 AJ769266 Populus euphratica leaf adult Populus euphratica cDNA
clone P0000100027G08F1, mRNA sequence
Length = 413
Score = 79.8 bits (40), Expect = 3e-013
Identities = 49/52 (94%)
Strand = Plus / Minus
Query: 9 cggtggcggccgctctagaactagtggatcccccgggctgcaggaattcggc 60
|||||||||||||| || |||||||||||||||| |||||||||||||||||
Sbjct: 382 cggtggcggccgctttaaaactagtggatccccccggctgcaggaattcggc 331
>gb|CF227381.1|CF227381 PtaD4A12B0503 Poplar cDNA library from wood tissues Populus alba x
Populus tremula cDNA 5', mRNA sequence
Length = 589
Score = 77.8 bits (39), Expect = 1e-012
Identities = 72/83 (86%)
Strand = Plus / Plus
Query: 519 acaatatcaaggctatcatcatggacgtgatgtttggcgggacggagacggtggcgtcgg 578
|||| ||||| || || |||||||| ||||||||||| ||||| ||||||||||||||||
Sbjct: 1 acaacatcaaagccataatcatggatgtgatgtttggtgggacagagacggtggcgtcgg 60
Query: 579 cgatcgagtgggcgatggcggag 601
| || ||||||| |||||||||
Sbjct: 61 caatagagtgggtcatggcggag 83
>emb|AJ416708.1|PDE416708 Populus deltoides MER locus, genomic DNA, cultivar S9-2
Length = 95055
Score = 77.8 bits (39), Expect = 1e-012
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 1 ctccaccgcggtggcggccgctctagaactagtggatcc 39
|||||||||||||||||||||||||||||||||||||||
Sbjct: 3 ctccaccgcggtggcggccgctctagaactagtggatcc 41
Score = 52.0 bits (26), Expect = 6e-005
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 33 tggatcccccgggctgcaggaattcg 58
||||||||||||||||||||||||||
Sbjct: 94946 tggatcccccgggctgcaggaattcg 94971
>gb|AJ769292.1|AJ769292 AJ769292 Populus euphratica leaf adult Populus euphratica cDNA
clone P0000100028D03F1, mRNA sequence
Length = 143
Score = 75.8 bits (38), Expect = 4e-012
Identities = 50/54 (92%)
Strand = Plus / Minus
Query: 1 ctccaccgcggtggcggccgctctagaactagtggatcccccgggctgcaggaa 54
||||||||||||||||| |||||||||| |||||||||||||||| |||||||
Sbjct: 96 ctccaccgcggtggcgggcgctctagaaaaagtggatcccccgggcggcaggaa 43
>emb|AJ297290.1|PNI297290 Populus nigra microsatellite DNA, clone WPMS17
Length = 362
Score = 75.8 bits (38), Expect = 4e-012
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 1 ctccaccgcggtggcggccgctctagaactagtggatc 38
||||||||||||||||||||||||||||||||||||||
Sbjct: 32 ctccaccgcggtggcggccgctctagaactagtggatc 69
>gb|BU895083.1|BU895083 X019A12 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 608
Score = 73.8 bits (37), Expect = 2e-011
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 533 atcatcatggacgtgatgtttggcgggacggagacggtggcgtcggcgatcgagtgggcg 592
||||||||||| ||||||||||| ||||| ||||| ||||||||||| || ||||||||
Sbjct: 1 atcatcatggatgtgatgtttggtgggacagagacagtggcgtcggcaatagagtgggcc 60
Query: 593 atggc 597
|||||
Sbjct: 61 atggc 65
Score = 36.2 bits (18), Expect = 3.4
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 635 cagcaggagctcgccgacgtcgtggg 660
||||| |||||||||||||| |||||
Sbjct: 103 cagcaagagctcgccgacgtggtggg 128
>gb|CK117065.1|CK117065 B026P69 Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone B026P69 5', mRNA sequence
Length = 226
Score = 63.9 bits (32), Expect = 2e-008
Identities = 69/80 (86%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 518 gacaatatcaaggctatcatcatggacgtgatgtttggcgggacggagacggtggcgtcg 577
||||| ||||| || ||||||||||| ||||||||||| ||||| ||||| ||||||| |
Sbjct: 133 gacaacatcaaagcaatcatcatggatgtgatgtttggtgggacagagacagtggcgt-g 191
Query: 578 gcgatcgagtgggcgatggc 597
|| || |||||||| |||||
Sbjct: 192 gcaatagagtgggccatggc 211
>gb|AJ769249.1|AJ769249 AJ769249 Populus euphratica leaf adult Populus euphratica cDNA
clone P0000100027A01F1, mRNA sequence
Length = 244
Score = 63.9 bits (32), Expect = 2e-008
Identities = 44/48 (91%)
Strand = Plus / Minus
Query: 9 cggtggcggccgctctagaactagtggatcccccgggctgcaggaatt 56
|||||| ||||||| || || |||||||||||||||||||||||||||
Sbjct: 187 cggtgggggccgctttaaaaatagtggatcccccgggctgcaggaatt 140
>gb|AJ534493.1|AJ534493 AJ534493 Populus euphratica root and shoot Populus euphratica cDNA
clone 94, mRNA sequence
Length = 768
Score = 61.9 bits (31), Expect = 6e-008
Identities = 38/39 (97%), Gaps = 1/39 (2%)
Strand = Plus / Minus
Query: 6 ccgcggtggcggccgctctagaactagtggatcccccgg 44
|||||||||||||||||||| ||||||||||||||||||
Sbjct: 748 ccgcggtggcggccgctcta-aactagtggatcccccgg 711
>gb|AJ777947.1|AJ777947 AJ777947 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400037C07F1, mRNA sequence
Length = 689
Score = 61.9 bits (31), Expect = 6e-008
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 551 tttggcgggacggagacggtggcgtcggcgatcgagtgggcgatggcggag 601
||||| ||||| ||||||||||||||||| || |||||||| |||||||||
Sbjct: 1 tttggtgggacagagacggtggcgtcggcaatagagtgggccatggcggag 51
>emb|AJ297281.1|PNI297281 Populus nigra microsatellite DNA, clone WPMS12
Length = 918
Score = 54.0 bits (27), Expect = 1e-005
Identities = 36/38 (94%), Gaps = 1/38 (2%)
Strand = Plus / Minus
Query: 1 ctccaccgcggtggcggccgctctagaactagtggatc 38
||||||||||||| || |||||||||||||||||||||
Sbjct: 442 ctccaccgcggtg-cgnccgctctagaactagtggatc 406
>gb|CX653726.1|CX653726 PO02006B09 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02006B09 5', mRNA sequence
Length = 294
Score = 52.0 bits (26), Expect = 6e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 27 aactagtggatcccccgggctgcaggaattcggcacga 64
||||| |||||||||||||| |||||||| ||||||||
Sbjct: 2 aactactggatcccccgggccgcaggaatccggcacga 39
>gb|BI129575.1|BI129575 G092P68Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 468
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 28 actagtggatcccccgggctgcagg 52
|||||||||||||||||||||||||
Sbjct: 1 actagtggatcccccgggctgcagg 25
>gb|CX653459.1|CX653459 PO02002C02 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02002C02 5', mRNA sequence
Length = 355
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 33 tggatcccccgggctgcaggaattcggca 61
|||||||||||||| ||||||||||||||
Sbjct: 19 tggatcccccgggcggcaggaattcggca 47
>gb|CX654266.1|CX654266 PO02016E10 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02016E10 5', mRNA sequence
Length = 394
Score = 48.1 bits (24), Expect = 9e-004
Identities = 58/64 (90%), Gaps = 4/64 (6%)
Strand = Plus / Plus
Query: 3 ccaccgcggtggcggccgctctagaactag-tggatcccccgggc-tgcaggaattcggc 60
||||||||||||||| ||||||| || ||| |||||||||||||| |||||| |||||||
Sbjct: 1 ccaccgcggtggcgg-cgctctataattagttggatcccccgggcttgcagg-attcggc 58
Query: 61 acga 64
||||
Sbjct: 59 acga 62
>gb|CX656198.1|CX656198 PO02048F07 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02048F07 5', mRNA sequence
Length = 482
Score = 48.1 bits (24), Expect = 9e-004
Identities = 34/36 (94%), Gaps = 1/36 (2%)
Strand = Plus / Plus
Query: 29 ctagtggatcccccgggctgcaggaattcggcacga 64
||||||||| |||||||||||||| |||||||||||
Sbjct: 1 ctagtggattccccgggctgcagg-attcggcacga 35
>gb|CX654145.1|CX654145 PO02013G08 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02013G08 5', mRNA sequence
Length = 517
Score = 46.1 bits (23), Expect = 0.004
Identities = 37/39 (94%), Gaps = 2/39 (5%)
Strand = Plus / Plus
Query: 3 ccaccgcggtggcggccgctctagaactagtggatcccc 41
||||||||||||||| |||||||||| ||||||||||||
Sbjct: 6 ccaccgcggtggcgg-cgctctagaa-tagtggatcccc 42
>gb|CX655984.1|CX655984 PO02044A11 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02044A11 5', mRNA sequence
Length = 588
Score = 46.1 bits (23), Expect = 0.004
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 34 ggatcccccgggctgcaggaattcggcacga 64
|||| |||||||||||||| |||||||||||
Sbjct: 1 ggattccccgggctgcaggcattcggcacga 31
>gb|CX656234.1|CX656234 PO02049D02 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02049D02 5', mRNA sequence
Length = 262
Score = 46.1 bits (23), Expect = 0.004
Identities = 43/47 (91%), Gaps = 2/47 (4%)
Strand = Plus / Plus
Query: 18 ccgctctagaactagtggatcccccgggctgcaggaattcggcacga 64
|||||||| ||||||||||| ||| |||||||||||| |||||||||
Sbjct: 12 ccgctctaaaactagtggat-cccggggctgcaggaa-tcggcacga 56
>gb|CX656279.1|CX656279 PO02052A08 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02052A08 5', mRNA sequence
Length = 355
Score = 46.1 bits (23), Expect = 0.004
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 34 ggatcccccgggctgcaggaattcggc 60
||||||||||||||| |||||||||||
Sbjct: 1 ggatcccccgggctgaaggaattcggc 27
>gb|CX657539.1|CX657539 PO02052B12 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02052B12 5', mRNA sequence
Length = 499
Score = 46.1 bits (23), Expect = 0.004
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 13 ggcggccgctctagaactagtggatcccccgggctgcaggaattcgg 59
||||||||| | | ||||| ||||||||| || ||||||||||||||
Sbjct: 2 ggcggccgccccacaactactggatccccgggcctgcaggaattcgg 48
>gb|BI129510.1|BI129510 G091P68Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 430
Score = 44.1 bits (22), Expect = 0.014
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 27 aactagtggatcccccgggctgcagg 52
|||||||| |||||||||||||||||
Sbjct: 2 aactagtgtatcccccgggctgcagg 27
>gb|CK090915.1|CK090915 F031P53.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F031P53 3', mRNA sequence
Length = 172
Score = 44.1 bits (22), Expect = 0.014
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 31 agtggatcccccgggctgcaggaatt 56
||||||||||||||| ||||||||||
Sbjct: 144 agtggatcccccggggtgcaggaatt 119
>gb|CX654535.1|CX654535 PO02012F09 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02012F09 5', mRNA sequence
Length = 652
Score = 44.1 bits (22), Expect = 0.014
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 38 cccccgggctgcaggaattcggcacg 63
||||||||||||||| ||||||||||
Sbjct: 1 cccccgggctgcaggcattcggcacg 26
>gb|CX657139.1|CX657139 PO02030F08 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02030F08 5', mRNA sequence
Length = 437
Score = 44.1 bits (22), Expect = 0.014
Identities = 43/46 (93%), Gaps = 3/46 (6%)
Strand = Plus / Plus
Query: 7 cgcggtggcggccgctctagaactagtggatcccccgggctgcagg 52
|||||||||||| ||||||||| |||||||||||| ||||||||||
Sbjct: 2 cgcggtggcggc-gctctagaa-tagtggatcccc-gggctgcagg 44
>gb|CX657291.1|CX657291 PO02039C05 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02039C05 5', mRNA sequence
Length = 642
Score = 44.1 bits (22), Expect = 0.014
Identities = 52/58 (89%), Gaps = 3/58 (5%)
Strand = Plus / Plus
Query: 8 gcggtggcggccgctctagaactagtggatcccccgggc-tgcaggaattcggcacga 64
||||||||||| ||||| ||||| |||||||||||||| |||||||| |||||||||
Sbjct: 1 gcggtggcggc-gctcttaaactattggatcccccgggcttgcaggaa-tcggcacga 56
>gb|CX657399.1|CX657399 PO02044H10 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02044H10 5', mRNA sequence
Length = 627
Score = 44.1 bits (22), Expect = 0.014
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 39 ccccgggctgcaggaattcggcacga 64
|||||||||||||| |||||||||||
Sbjct: 5 ccccgggctgcaggcattcggcacga 30
>gb|DN503555.1|DN503555 G091P68 Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G091P68 5', mRNA
sequence
Length = 430
Score = 44.1 bits (22), Expect = 0.014
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 27 aactagtggatcccccgggctgcagg 52
|||||||| |||||||||||||||||
Sbjct: 2 aactagtgtatcccccgggctgcagg 27
>gb|CF216275.1|CF216275 PT1096 Hybrid aspen xylem up-regulated Populus alba x Populus
tremula cDNA clone PT1096, mRNA sequence
Length = 544
Score = 42.1 bits (21), Expect = 0.055
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 222 tgcaggagttctcgaagctgttcggcgccttcaacgt 258
||||||||||||| ||||| ||||| || ||||||||
Sbjct: 101 tgcaggagttctccaagcttttcggagcattcaacgt 65
>gb|CV274060.1|CV274060 WS0172.B21_B03 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS0172_B03 3', mRNA sequence
Length = 577
Score = 42.1 bits (21), Expect = 0.055
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 29 ctagtggatcccccgggctgcaggaattcggca 61
||||||| |||||||| ||||||||||| ||||
Sbjct: 576 ctagtgggtcccccggactgcaggaattgggca 544
>gb|CX654770.1|CX654770 PO02059D12 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02059D12 5', mRNA sequence
Length = 604
Score = 42.1 bits (21), Expect = 0.055
Identities = 35/37 (94%), Gaps = 2/37 (5%)
Strand = Plus / Plus
Query: 28 actagtggatcccccgggctgcaggaattcggcacga 64
|||||||||||||| |||||||||| |||||||||||
Sbjct: 1 actagtggatcccc-gggctgcagg-attcggcacga 35
>gb|CX654842.1|CX654842 PO02060E04 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02060E04 5', mRNA sequence
Length = 680
Score = 42.1 bits (21), Expect = 0.055
Identities = 35/37 (94%), Gaps = 2/37 (5%)
Strand = Plus / Plus
Query: 28 actagtggatcccccgggctgcaggaattcggcacga 64
|||||||||||||| |||||||||| |||||||||||
Sbjct: 1 actagtggatcccc-gggctgcagg-attcggcacga 35
>gb|CX655925.1|CX655925 PO02043A08 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02043A08 5', mRNA sequence
Length = 672
Score = 42.1 bits (21), Expect = 0.055
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 40 cccgggctgcaggaattcggcacga 64
||||||||||||| |||||||||||
Sbjct: 1 cccgggctgcaggcattcggcacga 25
>gb|CX657382.1|CX657382 PO02044B05 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02044B05 5', mRNA sequence
Length = 426
Score = 42.1 bits (21), Expect = 0.055
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 39 ccccgggctgcaggaattcggcacg 63
|||||||||||||| ||||||||||
Sbjct: 4 ccccgggctgcaggcattcggcacg 28
>gb|CN518888.1|CN518888 GQ0104.B3_G14 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0104_G14 5', mRNA sequence
Length = 834
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 33 tggatcccccgggctgcagg 52
||||||||||||||||||||
Sbjct: 1 tggatcccccgggctgcagg 20
>gb|AJ769267.1|AJ769267 AJ769267 Populus euphratica leaf adult Populus euphratica cDNA
clone P0000100027G09F1, mRNA sequence
Length = 354
Score = 40.1 bits (20), Expect = 0.22
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 37 tcccccgggctgcaggaattcggc 60
|||||| |||||||||||||||||
Sbjct: 354 tccccccggctgcaggaattcggc 331
>gb|AJ769314.1|AJ769314 AJ769314 Populus euphratica leaf adult Populus euphratica cDNA
clone P0000100028H04F1, mRNA sequence
Length = 78
Score = 40.1 bits (20), Expect = 0.22
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 1 ctccaccgcggtggcggccgctct 24
|||| |||||||||||||||||||
Sbjct: 24 ctcccccgcggtggcggccgctct 1
>gb|CX655784.1|CX655784 PO02040A05 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02040A05 5', mRNA sequence
Length = 418
Score = 40.1 bits (20), Expect = 0.22
Identities = 30/32 (93%), Gaps = 1/32 (3%)
Strand = Plus / Plus
Query: 26 gaactagtggatcccccgggc-tgcaggaatt 56
|||||| |||||||||||||| ||||||||||
Sbjct: 1 gaactactggatcccccgggcttgcaggaatt 32
>gb|CX656924.1|CX656924 PO02028D09 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02028D09 5', mRNA sequence
Length = 569
Score = 40.1 bits (20), Expect = 0.22
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 39 ccccgggctgcaggaattcggcac 62
|||||||||| |||||||||||||
Sbjct: 23 ccccgggctgaaggaattcggcac 46
>gb|CX657445.1|CX657445 PO02046F08 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02046F08 5', mRNA sequence
Length = 442
Score = 40.1 bits (20), Expect = 0.22
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 29 ctagtggatcccccgggctgcagg 52
||||||||| ||||||||||||||
Sbjct: 1 ctagtggattccccgggctgcagg 24
>gb|CX657519.1|CX657519 PO02049D07 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02049D07 5', mRNA sequence
Length = 357
Score = 40.1 bits (20), Expect = 0.22
Identities = 30/32 (93%), Gaps = 1/32 (3%)
Strand = Plus / Plus
Query: 30 tagtggatcccccgggctgcaggaattcggca 61
|||||||||||| |||||| ||||||||||||
Sbjct: 9 tagtggatcccc-gggctggaggaattcggca 39
>gb|AI166854.1|AI166854 xylem.est.645 Poplar xylem Lambda ZAPII library Populus
trichocarpa cDNA 5', mRNA sequence
Length = 160
Score = 38.2 bits (19), Expect = 0.86
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 46 ctgcaggaattcggcacga 64
|||||||||||||||||||
Sbjct: 1 ctgcaggaattcggcacga 19
>gb|BI136919.1|BI136919 F076P70Y Populus flower cDNA library Populus trichocarpa cDNA,
mRNA sequence
Length = 536
Score = 38.2 bits (19), Expect = 0.86
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 46 ctgcaggaattcggcacga 64
|||||||||||||||||||
Sbjct: 1 ctgcaggaattcggcacga 19
>gb|CN192518.1|CN192518 PtdH1010 hybrid poplar systemically wound-induced leaf cDNA
library Populus trichocarpa x Populus deltoides cDNA 5,
mRNA sequence
Length = 294
Score = 38.2 bits (19), Expect = 0.86
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 36 atcccccgggctgcaggaa 54
|||||||||||||||||||
Sbjct: 1 atcccccgggctgcaggaa 19
>gb|CN521902.1|CN521902 GQ0124.B3_J20 GQ012 Populus trichocarpa x Populus deltoides cDNA
clone GQ0124_J20 5', mRNA sequence
Length = 220
Score = 38.2 bits (19), Expect = 0.86
Identities = 34/39 (87%)
Strand = Plus / Plus
Query: 694 caagctccccttcctcaagtgcgtcatcaaggagacgct 732
|||||| |||| ||| | ||||||||| |||||||||||
Sbjct: 19 caagcttccctaccttaggtgcgtcataaaggagacgct 57
>gb|AJ780694.1|AJ780694 AJ780694 Populus euphratica leaf 3-6 months Populus euphratica cDNA
clone P0000900011C11F1, mRNA sequence
Length = 611
Score = 38.2 bits (19), Expect = 0.86
Identities = 34/39 (87%)
Strand = Plus / Plus
Query: 694 caagctccccttcctcaagtgcgtcatcaaggagacgct 732
|||||| |||| ||| | ||||||||| |||||||||||
Sbjct: 336 caagcttccctaccttaggtgcgtcataaaggagacgct 374
>gb|CV266787.1|CV266787 WS0203.B21_P17 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0203_P17 3', mRNA sequence
Length = 691
Score = 38.2 bits (19), Expect = 0.86
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 391 cgacgacgccgacgccgac 409
|||||||||||||||||||
Sbjct: 625 cgacgacgccgacgccgac 607
>gb|CX653587.1|CX653587 PO02004B10 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02004B10 5', mRNA sequence
Length = 546
Score = 38.2 bits (19), Expect = 0.86
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 30 tagtggatcccccgggctgcaggaattcggcacga 64
|||||||||||| || |||||||||| |||||||
Sbjct: 21 tagtggatccccgggcttgcaggaatttggcacga 55
>gb|CX654572.1|CX654572 PO02015C03 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02015C03 5', mRNA sequence
Length = 667
Score = 38.2 bits (19), Expect = 0.86
Identities = 50/55 (90%), Gaps = 4/55 (7%)
Strand = Plus / Plus
Query: 7 cgcggtggcggccgctctagaactagtggatcccccgggctgcaggaattcggca 61
|||||||||||| |||||| || |||||| |||||||||||| ||||||||||||
Sbjct: 7 cgcggtggcggc-gctctataa-tagtgg-tcccccgggctg-aggaattcggca 57
>gb|CX654821.1|CX654821 PO02060B03 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02060B03 5', mRNA sequence
Length = 620
Score = 38.2 bits (19), Expect = 0.86
Identities = 43/47 (91%), Gaps = 3/47 (6%)
Strand = Plus / Plus
Query: 7 cgcggtggcggccgctctagaact-agtggatcccccgggctgcagg 52
|||||||| |||||||||| |||| ||||||||||| ||||||||||
Sbjct: 4 cgcggtgg-ggccgctctataacttagtggatcccc-gggctgcagg 48
>gb|CX655255.1|CX655255 PO02032B05 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02032B05 5', mRNA sequence
Length = 712
Score = 38.2 bits (19), Expect = 0.86
Identities = 52/58 (89%), Gaps = 5/58 (8%)
Strand = Plus / Plus
Query: 7 cgcggtggcggccgctctagaactagtggatcccccgggctgcaggaattcggcacga 64
||||||||||| |||||| || |||||||| |||||||||||||| |||||||||||
Sbjct: 1 cgcggtggcgg-cgctct--aaatagtggat-ccccgggctgcagg-attcggcacga 53
>gb|CX655983.1|CX655983 PO02044A05 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02044A05 5', mRNA sequence
Length = 509
Score = 38.2 bits (19), Expect = 0.86
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 30 tagtggatcccccgggctgcagg 52
|||||||| ||||||||||||||
Sbjct: 24 tagtggattccccgggctgcagg 46
>gb|CX656125.1|CX656125 PO02047C01 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02047C01 5', mRNA sequence
Length = 626
Score = 38.2 bits (19), Expect = 0.86
Identities = 33/35 (94%), Gaps = 2/35 (5%)
Strand = Plus / Plus
Query: 30 tagtggatcccccgggctgcaggaattcggcacga 64
|||||||||||| |||||||||| |||||||||||
Sbjct: 15 tagtggatcccc-gggctgcagg-attcggcacga 47
>gb|CX656139.1|CX656139 PO02047E06 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02047E06 5', mRNA sequence
Length = 422
Score = 38.2 bits (19), Expect = 0.86
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 42 cgggctgcaggaattcggcacga 64
|||||||||||||| ||||||||
Sbjct: 1 cgggctgcaggaatccggcacga 23
>gb|CX656325.1|CX656325 PO02053C11 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02053C11 5', mRNA sequence
Length = 411
Score = 38.2 bits (19), Expect = 0.86
Identities = 29/31 (93%), Gaps = 1/31 (3%)
Strand = Plus / Plus
Query: 35 gatcccccgggc-tgcaggaattcggcacga 64
|||||||||||| ||||||||| ||||||||
Sbjct: 1 gatcccccgggcttgcaggaatccggcacga 31
>gb|CX657738.1|CX657738 PO02028F10 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02028F10 5', mRNA sequence
Length = 708
Score = 38.2 bits (19), Expect = 0.86
Identities = 36/39 (92%), Gaps = 2/39 (5%)
Strand = Plus / Plus
Query: 27 aactagtggatcccccgggc-tgcaggaattcggcacga 64
||||||||||| |||||||| |||||||| |||||||||
Sbjct: 17 aactagtggattccccgggcttgcaggaa-tcggcacga 54
>gb|BP923283.1|BP923283 BP923283 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-017_M21.f 5', mRNA sequence
Length = 318
Score = 38.2 bits (19), Expect = 0.86
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 391 cgacgacgccgacgccgac 409
|||||||||||||||||||
Sbjct: 118 cgacgacgccgacgccgac 136
>gb|BP923777.1|BP923777 BP923777 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-023_M19.f 5', mRNA sequence
Length = 183
Score = 38.2 bits (19), Expect = 0.86
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 391 cgacgacgccgacgccgac 409
|||||||||||||||||||
Sbjct: 128 cgacgacgccgacgccgac 146
>gb|BP923874.1|BP923874 BP923874 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-025_A12.f 5', mRNA sequence
Length = 481
Score = 38.2 bits (19), Expect = 0.86
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 391 cgacgacgccgacgccgac 409
|||||||||||||||||||
Sbjct: 130 cgacgacgccgacgccgac 148
>gb|BP928397.1|BP928397 BP928397 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-082_O10.f 5', mRNA sequence
Length = 545
Score = 38.2 bits (19), Expect = 0.86
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 391 cgacgacgccgacgccgac 409
|||||||||||||||||||
Sbjct: 167 cgacgacgccgacgccgac 185
>gb|BI121504.1|BI121504 F038P34Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 500
Score = 36.2 bits (18), Expect = 3.4
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 823 catggtcaacgtgtgggccatc 844
|||||||||| |||||||||||
Sbjct: 436 catggtcaacatgtgggccatc 415
>gb|BI131481.1|BI131481 G121P52Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 365
Score = 36.2 bits (18), Expect = 3.4
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 465 ccgccgccgccgcggacggtga 486
||||||||||||| ||||||||
Sbjct: 315 ccgccgccgccgcagacggtga 336
>gb|BI138621.1|BI138621 F111P02Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 293
Score = 36.2 bits (18), Expect = 3.4
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 823 catggtcaacgtgtgggccatc 844
|||||||||| |||||||||||
Sbjct: 31 catggtcaacatgtgggccatc 10
>gb|BI138649.1|BI138649 F112P07Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 472
Score = 36.2 bits (18), Expect = 3.4
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 823 catggtcaacgtgtgggccatc 844
|||||||||| |||||||||||
Sbjct: 245 catggtcaacatgtgggccatc 224
>gb|BI138871.1|BI138871 F118P12Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 509
Score = 36.2 bits (18), Expect = 3.4
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 823 catggtcaacgtgtgggccatc 844
|||||||||| |||||||||||
Sbjct: 188 catggtcaacatgtgggccatc 167
>gb|BU816548.1|BU816548 N066E08 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 303
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 590 gcgatggcggagatgatg 607
||||||||||||||||||
Sbjct: 58 gcgatggcggagatgatg 41
>gb|BU827582.1|BU827582 K005P03P Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 131
Score = 36.2 bits (18), Expect = 3.4
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 823 catggtcaacgtgtgggccatc 844
|||||||||| |||||||||||
Sbjct: 7 catggtcaacatgtgggccatc 28
>gb|BU830828.1|BU830828 T013F08 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 652
Score = 36.2 bits (18), Expect = 3.4
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 823 catggtcaacgtgtgggccatc 844
|||||||||| |||||||||||
Sbjct: 225 catggtcaacatgtgggccatc 246
>gb|BU831829.1|BU831829 T026C05 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 690
Score = 36.2 bits (18), Expect = 3.4
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 823 catggtcaacgtgtgggccatc 844
|||||||||| |||||||||||
Sbjct: 236 catggtcaacatgtgggccatc 257
>gb|BU835032.1|BU835032 T068F12 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 443
Score = 36.2 bits (18), Expect = 3.4
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 823 catggtcaacgtgtgggccatc 844
|||||||||| |||||||||||
Sbjct: 265 catggtcaacatgtgggccatc 286
>gb|BU837400.1|BU837400 T101D05 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 665
Score = 36.2 bits (18), Expect = 3.4
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 823 catggtcaacgtgtgggccatc 844
|||||||||| |||||||||||
Sbjct: 141 catggtcaacatgtgggccatc 162
>gb|BU837431.1|BU837431 T101G04 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 632
Score = 36.2 bits (18), Expect = 3.4
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 823 catggtcaacgtgtgggccatc 844
|||||||||| |||||||||||
Sbjct: 454 catggtcaacatgtgggccatc 475
>gb|BU837455.1|BU837455 T102A07 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 550
Score = 36.2 bits (18), Expect = 3.4
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 823 catggtcaacgtgtgggccatc 844
|||||||||| |||||||||||
Sbjct: 24 catggtcaacatgtgggccatc 45
>gb|CA929951.1|CA929951 MTU2CA.P4.H12 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 645
Score = 36.2 bits (18), Expect = 3.4
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 823 catggtcaacgtgtgggccatc 844
|||||||||| |||||||||||
Sbjct: 199 catggtcaacatgtgggccatc 178
>gb|CA929998.1|CA929998 MTU2CA.P5.F12 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 671
Score = 36.2 bits (18), Expect = 3.4
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 823 catggtcaacgtgtgggccatc 844
|||||||||| |||||||||||
Sbjct: 606 catggtcaacatgtgggccatc 627
>gb|CK090121.1|CK090121 C066P09.3pR Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA clone C066P09 3', mRNA sequence
Length = 268
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1263 ttttttccctttaaaaaa 1280
||||||||||||||||||
Sbjct: 124 ttttttccctttaaaaaa 107
>gb|CK091337.1|CK091337 F080P64.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F080P64 3', mRNA sequence
Length = 824
Score = 36.2 bits (18), Expect = 3.4
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 823 catggtcaacgtgtgggccatc 844
|||||||||| |||||||||||
Sbjct: 443 catggtcaacatgtgggccatc 464
>gb|CV240869.1|CV240869 WS02510.B21_J06 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02510_J06 3', mRNA sequence
Length = 748
Score = 36.2 bits (18), Expect = 3.4
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 823 catggtcaacgtgtgggccatc 844
|||||||||| |||||||||||
Sbjct: 601 catggtcaacatgtgggccatc 580
>gb|CV245414.1|CV245414 WS0257.B21_F16 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0257_F16 3', mRNA sequence
Length = 917
Score = 36.2 bits (18), Expect = 3.4
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 823 catggtcaacgtgtgggccatc 844
|||||||||| |||||||||||
Sbjct: 618 catggtcaacatgtgggccatc 597
>gb|CX653710.1|CX653710 PO02005H05 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02005H05 5', mRNA sequence
Length = 706
Score = 36.2 bits (18), Expect = 3.4
Identities = 27/30 (90%)
Strand = Plus / Plus
Query: 30 tagtggatcccccgggctgcaggaattcgg 59
|||||||||||| || |||||||||||||
Sbjct: 28 tagtggatccccgggcttgcaggaattcgg 57
>gb|CX655479.1|CX655479 PO02035D05 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02035D05 5', mRNA sequence
Length = 316
Score = 36.2 bits (18), Expect = 3.4
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 39 ccccgggctgcaggaattcggcacga 64
|||||||||||| |||||||| ||||
Sbjct: 13 ccccgggctgcacgaattcgggacga 38
>gb|CX655858.1|CX655858 PO02041B03 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02041B03 5', mRNA sequence
Length = 363
Score = 36.2 bits (18), Expect = 3.4
Identities = 28/30 (93%), Gaps = 1/30 (3%)
Strand = Plus / Plus
Query: 33 tggatcccccgggc-tgcaggaattcggca 61
|||||||||||||| ||||||||| |||||
Sbjct: 22 tggatcccccgggcttgcaggaatccggca 51
>gb|CX656264.1|CX656264 PO02051D02 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02051D02 5', mRNA sequence
Length = 314
Score = 36.2 bits (18), Expect = 3.4
Identities = 25/26 (96%), Gaps = 1/26 (3%)
Strand = Plus / Plus
Query: 39 ccccgggctgcaggaattcggcacga 64
|||||||||||||| |||||||||||
Sbjct: 5 ccccgggctgcagg-attcggcacga 29
>gb|CX656285.1|CX656285 PO02052B06 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02052B06 5', mRNA sequence
Length = 129
Score = 36.2 bits (18), Expect = 3.4
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 39 ccccgggctgcaggaattcggc 60
|||||||||||| |||||||||
Sbjct: 6 ccccgggctgcacgaattcggc 27
>gb|CX656375.1|CX656375 PO02054C08 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02054C08 5', mRNA sequence
Length = 358
Score = 36.2 bits (18), Expect = 3.4
Identities = 27/30 (90%)
Strand = Plus / Plus
Query: 30 tagtggatcccccgggctgcaggaattcgg 59
|||||||||||| || |||||||||||||
Sbjct: 1 tagtggatccccgggcttgcaggaattcgg 30
>gb|CX657344.1|CX657344 PO02042E11 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02042E11 5', mRNA sequence
Length = 675
Score = 36.2 bits (18), Expect = 3.4
Identities = 27/30 (90%)
Strand = Plus / Plus
Query: 30 tagtggatcccccgggctgcaggaattcgg 59
|||||||||||| || |||||||||||||
Sbjct: 20 tagtggatccccgggcttgcaggaattcgg 49
>gb|DN495618.1|DN495618 N066E08.5pR Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA clone N066E08 5', mRNA sequence
Length = 369
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 590 gcgatggcggagatgatg 607
||||||||||||||||||
Sbjct: 79 gcgatggcggagatgatg 62
>gb|DT470499.1|DT470499 WS0121.BR_B17 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0121_B17 5', mRNA sequence
Length = 634
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 559 gacggagacggtggcgtc 576
||||||||||||||||||
Sbjct: 39 gacggagacggtggcgtc 22
>gb|DT476267.1|DT476267 WS01228.B21_O24 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01228_O24 3', mRNA sequence
Length = 652
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1263 ttttttccctttaaaaaa 1280
||||||||||||||||||
Sbjct: 32 ttttttccctttaaaaaa 15
>gb|DT478800.1|DT478800 WS02523.BR_N13 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02523_N13 5', mRNA sequence
Length = 758
Score = 36.2 bits (18), Expect = 3.4
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 823 catggtcaacgtgtgggccatc 844
|||||||||| |||||||||||
Sbjct: 321 catggtcaacatgtgggccatc 342
>gb|DT480778.1|DT480778 WS02529.BR_O10 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02529_O10 5', mRNA sequence
Length = 858
Score = 36.2 bits (18), Expect = 3.4
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 823 catggtcaacgtgtgggccatc 844
|||||||||| |||||||||||
Sbjct: 537 catggtcaacatgtgggccatc 516
>gb|DT483887.1|DT483887 WS02523.B21_N13 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02523_N13 3', mRNA sequence
Length = 880
Score = 36.2 bits (18), Expect = 3.4
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 823 catggtcaacgtgtgggccatc 844
|||||||||| |||||||||||
Sbjct: 560 catggtcaacatgtgggccatc 539
>gb|DT486052.1|DT486052 WS02529.B21_O10 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02529_O10 3', mRNA sequence
Length = 882
Score = 36.2 bits (18), Expect = 3.4
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 823 catggtcaacgtgtgggccatc 844
|||||||||| |||||||||||
Sbjct: 443 catggtcaacatgtgggccatc 464
>gb|DT488443.1|DT488443 WS02536.B21_H04 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02536_H04 3', mRNA sequence
Length = 613
Score = 36.2 bits (18), Expect = 3.4
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 823 catggtcaacgtgtgggccatc 844
|||||||||| |||||||||||
Sbjct: 588 catggtcaacatgtgggccatc 567
>gb|DT491094.1|DT491094 WS02546.C21.1_M18 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02546_M18 3', mRNA sequence
Length = 690
Score = 36.2 bits (18), Expect = 3.4
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 823 catggtcaacgtgtgggccatc 844
|||||||||| |||||||||||
Sbjct: 582 catggtcaacatgtgggccatc 561
>gb|DV463037.1|DV463037 MTUNUL1.P10.H06 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 340
Score = 36.2 bits (18), Expect = 3.4
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 465 ccgccgccgccgcggacggtgacgac 490
||||||||||||| ||||| ||||||
Sbjct: 178 ccgccgccgccgcagacggagacgac 203
>gb|DV466541.1|DV466541 MTUNUL1.P7.A04 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 871
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 559 gacggagacggtggcgtc 576
||||||||||||||||||
Sbjct: 294 gacggagacggtggcgtc 277
Database: Populus_nucl_with_EST.fasta
Posted date: May 2, 2006 3:31 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 107,759
Number of Sequences: 369679
Number of extensions: 107759
Number of successful extensions: 37545
Number of sequences better than 10.0: 108
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 37357
Number of HSP's gapped (non-prelim): 186
length of query: 1360
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1341
effective length of database: 196,384,763
effective search space: 263351967183
effective search space used: 263351967183
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)