BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AF332176.2.1
         (912 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BH860652.1|BH860652  ORNL128 Poplar BAC Library Populus t...    40   0.14 
gb|BU820530.1|BU820530  UB11CPB12 Populus tremula cambium cD...    40   0.14 
gb|BU864559.1|BU864559  S042A09 Populus imbibed seed cDNA li...    40   0.14 
gb|BU888422.1|BU888422  P007G10 Populus petioles cDNA librar...    40   0.14 
gb|DT478783.1|DT478783  WS02523.BR_M16 PT-MB-N-A-15 Populus ...    40   0.14 
gb|DT483866.1|DT483866  WS02523.B21_M16 PT-MB-N-A-15 Populus...    40   0.14 
gb|AC149481.1|  Populus trichocarpa clone Pop1-16J18, comple...    40   0.14 
gb|AC149541.1|  Populus trichocarpa clone Pop1-12C14, comple...    40   0.14 

>gb|BH860652.1|BH860652 ORNL128 Poplar BAC Library Populus trichocarpa genomic, DNA
           sequence
          Length = 1213

 Score = 40.1 bits (20), Expect = 0.14
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 824 ctagctagctagctagctgc 843
           ||||||||||||||||||||
Sbjct: 502 ctagctagctagctagctgc 483



>gb|BU820530.1|BU820530 UB11CPB12 Populus tremula cambium cDNA library Populus tremula cDNA
           5 prime, mRNA sequence
          Length = 491

 Score = 40.1 bits (20), Expect = 0.14
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 822 acctagctagctagctagct 841
           ||||||||||||||||||||
Sbjct: 259 acctagctagctagctagct 240



>gb|BU864559.1|BU864559 S042A09 Populus imbibed seed cDNA library Populus tremula cDNA 5
           prime, mRNA sequence
          Length = 365

 Score = 40.1 bits (20), Expect = 0.14
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 822 acctagctagctagctagct 841
           ||||||||||||||||||||
Sbjct: 180 acctagctagctagctagct 161



>gb|BU888422.1|BU888422 P007G10 Populus petioles cDNA library Populus tremula cDNA 5 prime,
           mRNA sequence
          Length = 603

 Score = 40.1 bits (20), Expect = 0.14
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 822 acctagctagctagctagct 841
           ||||||||||||||||||||
Sbjct: 263 acctagctagctagctagct 244



>gb|DT478783.1|DT478783 WS02523.BR_M16 PT-MB-N-A-15 Populus trichocarpa cDNA clone
           WS02523_M16 5', mRNA sequence
          Length = 602

 Score = 40.1 bits (20), Expect = 0.14
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 5   cgcgtgggcggcggcgcgtg 24
           ||||||||||||||||||||
Sbjct: 360 cgcgtgggcggcggcgcgtg 379



>gb|DT483866.1|DT483866 WS02523.B21_M16 PT-MB-N-A-15 Populus trichocarpa cDNA clone
           WS02523_M16 3', mRNA sequence
          Length = 602

 Score = 40.1 bits (20), Expect = 0.14
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 5   cgcgtgggcggcggcgcgtg 24
           ||||||||||||||||||||
Sbjct: 243 cgcgtgggcggcggcgcgtg 224



>gb|AC149481.1| Populus trichocarpa clone Pop1-16J18, complete sequence
          Length = 120131

 Score = 40.1 bits (20), Expect = 0.14
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 824   ctagctagctagctagctgc 843
             ||||||||||||||||||||
Sbjct: 53496 ctagctagctagctagctgc 53477



>gb|AC149541.1| Populus trichocarpa clone Pop1-12C14, complete sequence
          Length = 88772

 Score = 40.1 bits (20), Expect = 0.14
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 824   ctagctagctagctagctgc 843
             ||||||||||||||||||||
Sbjct: 55386 ctagctagctagctagctgc 55367



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 69,453
Number of Sequences: 369679
Number of extensions: 69453
Number of successful extensions: 19142
Number of sequences better than  0.5: 8
Number of HSP's better than  0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19074
Number of HSP's gapped (non-prelim): 47
length of query: 912
length of database: 203,408,664
effective HSP length: 19
effective length of query: 893
effective length of database: 196,384,763
effective search space: 175371593359
effective search space used: 175371593359
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)