BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AF019146.2.1
(1761 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU883957.1|BU883957 R003G06 Populus root cDNA library Po... 44 0.018
gb|CA933333.1|CA933333 MTU5CS.P6.F02 Aspen stem cDNA Librar... 44 0.018
gb|CF119765.1|CF119765 MTU10CS.P6.A09 Aspen stem cDNA Libra... 44 0.018
gb|CK116126.1|CK116126 Y020C12 Populus infected leaf substr... 44 0.018
gb|DT472677.1|DT472677 WS01227.BR.1_D07 PT-GT-FL-A-3 Populu... 44 0.018
gb|DT501152.1|DT501152 WS0131.BR_L05 PTxD-IL-FL-A-4 Populus... 44 0.018
gb|DV465528.1|DV465528 MTUNUL1.P4.G08 NUL Populus fremontii... 44 0.018
gb|CN192935.1|CN192935 PtdH1957 hybrid poplar systemically ... 42 0.071
gb|CA924331.1|CA924331 MTU7CL.P4.D08 Aspen leaf cDNA Librar... 40 0.28
gb|CK107796.1|CK107796 G057P55 Populus tension wood cDNA li... 40 0.28
>gb|BU883957.1|BU883957 R003G06 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 634
Score = 44.1 bits (22), Expect = 0.018
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 617 tgctgggcgttctcggcggtggcagcggtggaagggatcaacaagatcgt 666
|||||||||||||| || | || || ||||||||||| |||||||||||
Sbjct: 552 tgctgggcgttctcaacgattgctgctgtggaagggattaacaagatcgt 601
>gb|CA933333.1|CA933333 MTU5CS.P6.F02 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 254
Score = 44.1 bits (22), Expect = 0.018
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 617 tgctgggcgttctcggcggtggcagcggtggaagggatcaacaagatcgt 666
|||||||||||||| || | || || ||||||||||| |||||||||||
Sbjct: 224 tgctgggcgttctcaacgattgctgctgtggaagggattaacaagatcgt 175
>gb|CF119765.1|CF119765 MTU10CS.P6.A09 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 547
Score = 44.1 bits (22), Expect = 0.018
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 617 tgctgggcgttctcggcggtggcagcggtggaagggatcaacaagatcgt 666
|||||||||||||| || | || || ||||||||||| |||||||||||
Sbjct: 144 tgctgggcgttctcaacgattgctgctgtggaagggattaacaagatcgt 193
>gb|CK116126.1|CK116126 Y020C12 Populus infected leaf substracted cDNA library Populus
tremula cDNA clone Y020C12 5', mRNA sequence
Length = 376
Score = 44.1 bits (22), Expect = 0.018
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 1060 cggcaaggactactggatcgtgaagaactcgtggggca 1097
|||||| ||||||||||| |||| |||||| |||||||
Sbjct: 167 cggcaaagactactggattgtgaggaactcatggggca 204
>gb|DT472677.1|DT472677 WS01227.BR.1_D07 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01227_D07 5', mRNA sequence
Length = 730
Score = 44.1 bits (22), Expect = 0.018
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 617 tgctgggcgttctcggcggtggcagcggtggaagggatcaacaagatcgt 666
|||||||||||||| || | || || ||||||||||| |||||||||||
Sbjct: 548 tgctgggcgttctcaacgattgctgctgtggaagggattaacaagatcgt 597
>gb|DT501152.1|DT501152 WS0131.BR_L05 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0131_L05 5', mRNA sequence
Length = 808
Score = 44.1 bits (22), Expect = 0.018
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 617 tgctgggcgttctcggcggtggcagcggtggaagggatcaacaagatcgt 666
|||||||||||||| || | || || ||||||||||| |||||||||||
Sbjct: 545 tgctgggcgttctctacgattgctgctgtggaagggattaacaagatcgt 594
>gb|DV465528.1|DV465528 MTUNUL1.P4.G08 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 829
Score = 44.1 bits (22), Expect = 0.018
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 617 tgctgggcgttctcggcggtggcagcggtggaagggatcaacaagatcgt 666
|||||||||||||| || | || || ||||||||||| |||||||||||
Sbjct: 650 tgctgggcgttctcaacgattgctgctgtggaagggattaacaagatcgt 699
>gb|CN192935.1|CN192935 PtdH1957 hybrid poplar systemically wound-induced leaf cDNA library
Populus trichocarpa x Populus deltoides cDNA 5, mRNA
sequence
Length = 457
Score = 42.1 bits (21), Expect = 0.071
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 618 gctgggcgttctcggcggtggcagcggtggaagggatcaacaagatcgt 666
||||||||||||| || | || || ||||||||||| |||||||||||
Sbjct: 58 gctgggcgttctcaacgattgctgctgtggaagggattaacaagatcgt 106
>gb|CA924331.1|CA924331 MTU7CL.P4.D08 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 669
Score = 40.1 bits (20), Expect = 0.28
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 560 gactggcgcgagcgcggcgccgtcgccgaggtcaaggaccaggg 603
||||||||||| ||||| ||||| |||| ||||| ||||||||
Sbjct: 230 gactggcgcgatcgcggtgccgttaccgaagtcaaagaccaggg 187
>gb|CK107796.1|CK107796 G057P55 Populus tension wood cDNA library Populus tremula x Populus
tremuloides cDNA clone G057P55 5', mRNA sequence
Length = 393
Score = 40.1 bits (20), Expect = 0.28
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 1067 gactactggatcgtgaagaactcgtggggcac 1098
||||||||||| |||| |||||| ||||||||
Sbjct: 220 gactactggattgtgaggaactcatggggcac 251
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 116,697
Number of Sequences: 369679
Number of extensions: 116697
Number of successful extensions: 29951
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29935
Number of HSP's gapped (non-prelim): 16
length of query: 1761
length of database: 203,408,664
effective HSP length: 20
effective length of query: 1741
effective length of database: 196,015,084
effective search space: 341262261244
effective search space used: 341262261244
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)