BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 9196052.2.1
(771 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX173042.1|CX173042 H02_69-88_16.ab1 leaf inoculated wit... 38 0.48
gb|CV271426.1|CV271426 WS0154.B21_K20 PTxN-IB-A-6 Populus t... 36 1.9
gb|DN495895.1|DN495895 P019A11.5pR Populus petioles cDNA li... 36 1.9
gb|DT503660.1|DT503660 WS0137.BR_G08 PTxD-IL-FL-A-4 Populus... 36 1.9
gb|BU876649.1|BU876649 V023D05 Populus flower cDNA library ... 34 7.5
gb|BU877001.1|BU877001 V028B09 Populus flower cDNA library ... 34 7.5
gb|BU877431.1|BU877431 V033H10 Populus flower cDNA library ... 34 7.5
gb|CK093036.1|CK093036 G105P23.3pR Populus tension wood cDN... 34 7.5
gb|CK113038.1|CK113038 UR101TA05 Populus root cDNA library ... 34 7.5
gb|CN524529.1|CN524529 GQ015M15.T3_E01 GQ015 Populus tricho... 34 7.5
gb|CV271773.1|CV271773 WS0155.B21_K08 PTxN-IB-A-6 Populus t... 34 7.5
gb|CX178225.1|CX178225 F05_45-38_11.ab1 leaf inoculated wit... 34 7.5
gb|BP925903.1|BP925903 BP925903 full-length enriched poplar... 34 7.5
gb|BP927858.1|BP927858 BP927858 full-length enriched poplar... 34 7.5
gb|DN487856.1|DN487856 R009D09.3pR Populus root cDNA librar... 34 7.5
gb|DT472135.1|DT472135 WS01225.BR.1_G07 PT-GT-FL-A-3 Populu... 34 7.5
>gb|CX173042.1|CX173042 H02_69-88_16.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 533
Score = 38.2 bits (19), Expect = 0.48
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 211 agagtggaagagagagagaaacc 233
|||| ||||||||||||||||||
Sbjct: 30 agagaggaagagagagagaaacc 8
>gb|CV271426.1|CV271426 WS0154.B21_K20 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0154_K20 3', mRNA sequence
Length = 870
Score = 36.2 bits (18), Expect = 1.9
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 211 agagtggaagagagagagaaac 232
|||| |||||||||||||||||
Sbjct: 640 agagaggaagagagagagaaac 619
>gb|DN495895.1|DN495895 P019A11.5pR Populus petioles cDNA library Populus tremula cDNA
clone P019A11 5', mRNA sequence
Length = 597
Score = 36.2 bits (18), Expect = 1.9
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 219 agagagagagaaaccgta 236
||||||||||||||||||
Sbjct: 40 agagagagagaaaccgta 23
>gb|DT503660.1|DT503660 WS0137.BR_G08 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0137_G08 5', mRNA sequence
Length = 930
Score = 36.2 bits (18), Expect = 1.9
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 211 agagtggaagagagagagaaac 232
|||| |||||||||||||||||
Sbjct: 470 agagaggaagagagagagaaac 491
>gb|BU876649.1|BU876649 V023D05 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 497
Score = 34.2 bits (17), Expect = 7.5
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 155 aaacaaatggaaaagga 171
|||||||||||||||||
Sbjct: 453 aaacaaatggaaaagga 437
>gb|BU877001.1|BU877001 V028B09 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 498
Score = 34.2 bits (17), Expect = 7.5
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 155 aaacaaatggaaaagga 171
|||||||||||||||||
Sbjct: 454 aaacaaatggaaaagga 438
>gb|BU877431.1|BU877431 V033H10 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 481
Score = 34.2 bits (17), Expect = 7.5
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 155 aaacaaatggaaaagga 171
|||||||||||||||||
Sbjct: 438 aaacaaatggaaaagga 422
>gb|CK093036.1|CK093036 G105P23.3pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G105P23 3', mRNA sequence
Length = 629
Score = 34.2 bits (17), Expect = 7.5
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 330 tattcagctgctatatgcatg 350
||||||||||| |||||||||
Sbjct: 595 tattcagctgcgatatgcatg 615
>gb|CK113038.1|CK113038 UR101TA05 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA clone UR101TA05 5', mRNA sequence
Length = 567
Score = 34.2 bits (17), Expect = 7.5
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 191 agcaaggaaacaaacaa 207
|||||||||||||||||
Sbjct: 370 agcaaggaaacaaacaa 386
>gb|CN524529.1|CN524529 GQ015M15.T3_E01 GQ015 Populus trichocarpa x Populus deltoides cDNA
clone GQ015M15_E01 5', mRNA sequence
Length = 561
Score = 34.2 bits (17), Expect = 7.5
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 213 agtggaagagagagaga 229
|||||||||||||||||
Sbjct: 85 agtggaagagagagaga 69
>gb|CV271773.1|CV271773 WS0155.B21_K08 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0155_K08 3', mRNA sequence
Length = 790
Score = 34.2 bits (17), Expect = 7.5
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 210 aagagtggaagagagag 226
|||||||||||||||||
Sbjct: 763 aagagtggaagagagag 779
>gb|CX178225.1|CX178225 F05_45-38_11.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 653
Score = 34.2 bits (17), Expect = 7.5
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 210 aagagtggaagagagag 226
|||||||||||||||||
Sbjct: 57 aagagtggaagagagag 41
>gb|BP925903.1|BP925903 BP925903 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-052_H20.f 5', mRNA sequence
Length = 442
Score = 34.2 bits (17), Expect = 7.5
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 383 tctggcgatggcgagag 399
|||||||||||||||||
Sbjct: 172 tctggcgatggcgagag 188
>gb|BP927858.1|BP927858 BP927858 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-076_I11.f 5', mRNA sequence
Length = 407
Score = 34.2 bits (17), Expect = 7.5
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 383 tctggcgatggcgagag 399
|||||||||||||||||
Sbjct: 172 tctggcgatggcgagag 188
>gb|DN487856.1|DN487856 R009D09.3pR Populus root cDNA library Populus tremula x Populus
tremuloides cDNA clone R009D09 3', mRNA sequence
Length = 576
Score = 34.2 bits (17), Expect = 7.5
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 59 tgtcaaggaggaaacaa 75
|||||||||||||||||
Sbjct: 189 tgtcaaggaggaaacaa 205
>gb|DT472135.1|DT472135 WS01225.BR.1_G07 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01225_G07 5', mRNA sequence
Length = 868
Score = 34.2 bits (17), Expect = 7.5
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 212 gagtggaagagagagag 228
|||||||||||||||||
Sbjct: 389 gagtggaagagagagag 373
Database: Populus_nucl_with_EST.fasta
Posted date: May 2, 2006 3:31 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 99,562
Number of Sequences: 369679
Number of extensions: 99562
Number of successful extensions: 20795
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20777
Number of HSP's gapped (non-prelim): 18
length of query: 771
length of database: 203,408,664
effective HSP length: 19
effective length of query: 752
effective length of database: 196,384,763
effective search space: 147681341776
effective search space used: 147681341776
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)