BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 8635788.2.1
         (753 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BU835239.1|BU835239  T071D10 Populus apical shoot cDNA li...    40   0.12 
gb|DN499602.1|DN499602  T071D10.5pR Populus shoot meristem c...    40   0.12 
gb|DT488400.1|DT488400  WS02536.B21_F07 PT-MB-N-A-15 Populus...    40   0.12 
gb|AJ776654.1|AJ776654  AJ776654 Populus euphratica root 3-6...    38   0.47 
gb|CX176829.1|CX176829  H09_69-69_15.ab1 leaf inoculated wit...    38   0.47 
gb|BP925365.1|BP925365  BP925365 full-length enriched poplar...    38   0.47 

>gb|BU835239.1|BU835239 T071D10 Populus apical shoot cDNA library Populus tremula x Populus
           tremuloides cDNA 5 prime, mRNA sequence
          Length = 599

 Score = 40.1 bits (20), Expect = 0.12
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 668 agagcaagaagaagaagaag 687
           ||||||||||||||||||||
Sbjct: 460 agagcaagaagaagaagaag 479



>gb|DN499602.1|DN499602 T071D10.5pR Populus shoot meristem cDNA library Populus tremula x
           Populus tremuloides cDNA clone T071D10 5', mRNA sequence
          Length = 661

 Score = 40.1 bits (20), Expect = 0.12
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 668 agagcaagaagaagaagaag 687
           ||||||||||||||||||||
Sbjct: 460 agagcaagaagaagaagaag 479



>gb|DT488400.1|DT488400 WS02536.B21_F07 PT-MB-N-A-15 Populus trichocarpa cDNA clone
           WS02536_F07 3', mRNA sequence
          Length = 394

 Score = 40.1 bits (20), Expect = 0.12
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 668 agagcaagaagaagaagaag 687
           ||||||||||||||||||||
Sbjct: 322 agagcaagaagaagaagaag 341



>gb|AJ776654.1|AJ776654 AJ776654 Populus euphratica root 3-6 months Populus euphratica cDNA
           clone P0000400016F01F1, mRNA sequence
          Length = 447

 Score = 38.2 bits (19), Expect = 0.47
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 669 gagcaagaagaagaagaag 687
           |||||||||||||||||||
Sbjct: 373 gagcaagaagaagaagaag 355



>gb|CX176829.1|CX176829 H09_69-69_15.ab1 leaf inoculated with Marssonia pathogen of Populus
           deltoides Populus deltoides cDNA, mRNA sequence
          Length = 602

 Score = 38.2 bits (19), Expect = 0.47
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 670 agcaagaagaagaagaagg 688
           |||||||||||||||||||
Sbjct: 155 agcaagaagaagaagaagg 173



>gb|BP925365.1|BP925365 BP925365 full-length enriched poplar cDNA library Populus nigra
           cDNA clone PnFL1-045_A14.f 5', mRNA sequence
          Length = 412

 Score = 38.2 bits (19), Expect = 0.47
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 671 gcaagaagaagaagaaggc 689
           |||||||||||||||||||
Sbjct: 325 gcaagaagaagaagaaggc 307



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 80,294
Number of Sequences: 369679
Number of extensions: 80294
Number of successful extensions: 34064
Number of sequences better than  0.5: 6
Number of HSP's better than  0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34035
Number of HSP's gapped (non-prelim): 17
length of query: 753
length of database: 203,408,664
effective HSP length: 19
effective length of query: 734
effective length of database: 196,384,763
effective search space: 144146416042
effective search space used: 144146416042
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)