BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8635730.2.1
(1031 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU887064.1|BU887064 R054B03 Populus root cDNA library Po... 62 4e-008
gb|BU837990.1|BU837990 T108C04 Populus apical shoot cDNA li... 52 4e-005
gb|CN520600.1|CN520600 GQ0106.B3_F23 GQ010 Populus trichoca... 52 4e-005
gb|DN500008.1|DN500008 T108C04.5pR Populus shoot meristem c... 52 4e-005
gb|BU829270.1|BU829270 K037P54P Populus apical shoot cDNA l... 46 0.003
gb|AJ775854.1|AJ775854 AJ775854 Populus euphratica root 3-6... 46 0.003
gb|CV282297.1|CV282297 WS0184.B21_D24 PTxD-IL-N-A-9 Populus... 46 0.003
gb|DT478919.1|DT478919 WS02524.BR_D05 PT-MB-N-A-15 Populus ... 46 0.003
gb|BI127494.1|BI127494 G061P44Y Populus cambium cDNA librar... 44 0.011
gb|CX657100.1|CX657100 PO02060B05 Poplar SC cDNA library Po... 44 0.011
gb|BU868208.1|BU868208 M112E10 Populus flower cDNA library ... 42 0.042
gb|BU887627.1|BU887627 R064D01 Populus root cDNA library Po... 42 0.042
gb|CV238570.1|CV238570 WS0127.B21.1_D02 PT-GT-FL-A-3 Populu... 42 0.042
gb|DT475455.1|DT475455 WS0127.BR_D02 PT-GT-FL-A-3 Populus t... 42 0.042
gb|DT516399.1|DT516399 WS02431.B21_E07 PTxD-ICC-N-A-14 Popu... 42 0.042
gb|DV465687.1|DV465687 MTUNUL1.P41.G09 NUL Populus fremonti... 42 0.042
gb|AY129246.1| Populus x canescens putative MYB transcripti... 42 0.042
gb|AJ771501.1|AJ771501 AJ771501 Populus euphratica root 3-6... 40 0.16
gb|CV240640.1|CV240640 WS0251.B21_P01 PT-MB-N-A-15 Populus ... 40 0.16
gb|DT510473.1|DT510473 WS02426.BR_K10 PTxD-ICC-N-A-14 Popul... 40 0.16
gb|DT521507.1|DT521507 WS02034.B21_H16 PTxN-IB-N-A-11 Popul... 40 0.16
>gb|BU887064.1|BU887064 R054B03 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 674
Score = 61.9 bits (31), Expect = 4e-008
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 155 ggacggacaacgacgtcaagaactactggaacaccaagctcaagaag 201
||||||| || ||| |||| |||||||||||||||||||||||||||
Sbjct: 439 ggacggataatgacatcaaaaactactggaacaccaagctcaagaag 485
>gb|BU837990.1|BU837990 T108C04 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 676
Score = 52.0 bits (26), Expect = 4e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 10 aagagctgccgtcttcgctggctcaactacctccgccc 47
|||||||||||||| |||||| | ||||||||||||||
Sbjct: 195 aagagctgccgtctccgctggatgaactacctccgccc 232
>gb|CN520600.1|CN520600 GQ0106.B3_F23 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0106_F23 5', mRNA sequence
Length = 801
Score = 52.0 bits (26), Expect = 4e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 10 aagagctgccgtcttcgctggctcaactacctccgccc 47
|||||||||||||| |||||| | ||||||||||||||
Sbjct: 329 aagagctgccgtctccgctggatgaactacctccgccc 366
>gb|DN500008.1|DN500008 T108C04.5pR Populus shoot meristem cDNA library Populus tremula x
Populus tremuloides cDNA clone T108C04 5', mRNA sequence
Length = 696
Score = 52.0 bits (26), Expect = 4e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 10 aagagctgccgtcttcgctggctcaactacctccgccc 47
|||||||||||||| |||||| | ||||||||||||||
Sbjct: 194 aagagctgccgtctccgctggatgaactacctccgccc 231
>gb|BU829270.1|BU829270 K037P54P Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 519
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 13 agctgccgtcttcgctggctcaactacctccgccc 47
||||||||||| |||||| | ||||||||||||||
Sbjct: 392 agctgccgtctccgctggatgaactacctccgccc 358
>gb|AJ775854.1|AJ775854 AJ775854 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400006D03F1, mRNA sequence
Length = 626
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 175 aactactggaacaccaagctcaagaag 201
|||||||||||||||||||| ||||||
Sbjct: 212 aactactggaacaccaagctgaagaag 238
>gb|CV282297.1|CV282297 WS0184.B21_D24 PTxD-IL-N-A-9 Populus trichocarpa x Populus
deltoides cDNA clone WS0184_D24 3', mRNA sequence
Length = 857
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 13 agctgccgtcttcgctggctcaactacctccgccc 47
||||||||||| |||||| | ||||||||||||||
Sbjct: 649 agctgccgtctccgctggatgaactacctccgccc 683
>gb|DT478919.1|DT478919 WS02524.BR_D05 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02524_D05 5', mRNA sequence
Length = 881
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 13 agctgccgtcttcgctggctcaactacctccgccc 47
||||||||||| |||||| | ||||||||||||||
Sbjct: 401 agctgccgtctccgctggatgaactacctccgccc 435
>gb|BI127494.1|BI127494 G061P44Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 557
Score = 44.1 bits (22), Expect = 0.011
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 cgatgcggtaagagctgccgtcttcgctgg 30
||||| || |||||||||||||||||||||
Sbjct: 169 cgatgtggcaagagctgccgtcttcgctgg 198
>gb|CX657100.1|CX657100 PO02060B05 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02060B05 5', mRNA sequence
Length = 673
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 151 ggacggacggacaacgacgtcaagaactactggaacac 188
||||| || |||||||| |||||||||||||||||||
Sbjct: 308 ggacgaacagacaacgagatcaagaactactggaacac 345
>gb|BU868208.1|BU868208 M112E10 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 450
Score = 42.1 bits (21), Expect = 0.042
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 10 aagagctgccgtcttcgctgg 30
|||||||||||||||||||||
Sbjct: 140 aagagctgccgtcttcgctgg 160
>gb|BU887627.1|BU887627 R064D01 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 469
Score = 42.1 bits (21), Expect = 0.042
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 10 aagagctgccgtcttcgctgg 30
|||||||||||||||||||||
Sbjct: 348 aagagctgccgtcttcgctgg 368
>gb|CV238570.1|CV238570 WS0127.B21.1_D02 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0127_D02 3', mRNA sequence
Length = 509
Score = 42.1 bits (21), Expect = 0.042
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 240 gccgccgccgccaccaccagc 260
|||||||||||||||||||||
Sbjct: 362 gccgccgccgccaccaccagc 382
>gb|DT475455.1|DT475455 WS0127.BR_D02 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0127_D02 5', mRNA sequence
Length = 594
Score = 42.1 bits (21), Expect = 0.042
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 240 gccgccgccgccaccaccagc 260
|||||||||||||||||||||
Sbjct: 347 gccgccgccgccaccaccagc 327
>gb|DT516399.1|DT516399 WS02431.B21_E07 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02431_E07 3', mRNA sequence
Length = 783
Score = 42.1 bits (21), Expect = 0.042
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 240 gccgccgccgccaccaccagc 260
|||||||||||||||||||||
Sbjct: 358 gccgccgccgccaccaccagc 378
>gb|DV465687.1|DV465687 MTUNUL1.P41.G09 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 796
Score = 42.1 bits (21), Expect = 0.042
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 15 ctgccgtcttcgctggctcaactacctccgccc 47
||||||||| |||||| | ||||||||||||||
Sbjct: 548 ctgccgtctccgctggatgaactacctccgccc 580
>gb|AY129246.1| Populus x canescens putative MYB transcription factor (MYB) mRNA,
complete cds
Length = 1367
Score = 42.1 bits (21), Expect = 0.042
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 160 gacaacgacgtcaagaactactggaacac 188
|||||||| |||||||||||||||||||
Sbjct: 392 gacaacgaaatcaagaactactggaacac 420
>gb|AJ771501.1|AJ771501 AJ771501 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0001600002A05F1, mRNA sequence
Length = 588
Score = 40.1 bits (20), Expect = 0.16
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 157 acggacaacgacgtcaagaactactggaacac 188
|||||||| || |||||||||||||||||||
Sbjct: 305 acggacaatgaaatcaagaactactggaacac 336
>gb|CV240640.1|CV240640 WS0251.B21_P01 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0251_P01 3', mRNA sequence
Length = 528
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 240 gccgccgccgccaccaccag 259
||||||||||||||||||||
Sbjct: 406 gccgccgccgccaccaccag 387
>gb|DT510473.1|DT510473 WS02426.BR_K10 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02426_K10 5', mRNA sequence
Length = 843
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 239 ggccgccgccgccaccacca 258
||||||||||||||||||||
Sbjct: 79 ggccgccgccgccaccacca 98
>gb|DT521507.1|DT521507 WS02034.B21_H16 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02034_H16 3', mRNA sequence
Length = 588
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 241 ccgccgccgccaccaccagc 260
||||||||||||||||||||
Sbjct: 497 ccgccgccgccaccaccagc 516
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 92,253
Number of Sequences: 369679
Number of extensions: 92253
Number of successful extensions: 26705
Number of sequences better than 0.5: 21
Number of HSP's better than 0.5 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26655
Number of HSP's gapped (non-prelim): 50
length of query: 1031
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1012
effective length of database: 196,384,763
effective search space: 198741380156
effective search space used: 198741380156
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)