BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8010573.2.1
(1223 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU826636.1|BU826636 UK122TH12 Populus apical shoot cDNA ... 52 5e-005
gb|BU832161.1|BU832161 T030B03 Populus apical shoot cDNA li... 52 5e-005
gb|BU865284.1|BU865284 S051E06 Populus imbibed seed cDNA li... 52 5e-005
gb|BU866197.1|BU866197 S063H03 Populus imbibed seed cDNA li... 52 5e-005
gb|BU893215.1|BU893215 P074G09 Populus petioles cDNA librar... 52 5e-005
gb|CF231175.1|CF231175 PtaC0018C7C0705 Poplar cDNA library ... 52 5e-005
gb|CF232558.1|CF232558 PtaJXO0011H4H0416 Poplar cDNA librar... 52 5e-005
gb|CN520892.1|CN520892 GQ0107.B3_B21 GQ010 Populus trichoca... 52 5e-005
gb|CN523304.1|CN523304 GQ015M01.B3_L01 GQ015 Populus tricho... 52 5e-005
gb|CN549971.1|CN549971 GQ0243.B3_C07 GQ024 Populus trichoca... 52 5e-005
gb|CV236170.1|CV236170 WS01223.B21_B16 PT-GT-FL-A-3 Populus... 52 5e-005
gb|CV237332.1|CV237332 WS01227.B21.1_I01 PT-GT-FL-A-3 Popul... 52 5e-005
gb|CV270106.1|CV270106 WS0151.B21_B16 PTxN-IB-A-6 Populus t... 52 5e-005
gb|CX659340.1|CX659340 PO01029E03 Poplar SC cDNA library Po... 52 5e-005
gb|BP926448.1|BP926448 BP926448 full-length enriched poplar... 52 5e-005
gb|BP928728.1|BP928728 BP928728 full-length enriched poplar... 52 5e-005
gb|DT472846.1|DT472846 WS01227.BR_I01 PT-GT-FL-A-3 Populus ... 52 5e-005
gb|DT479295.1|DT479295 WS02525.BR_G07 PT-MB-N-A-15 Populus ... 52 5e-005
gb|DT495090.1|DT495090 WS0112.BR_F17 PT-P-FL-A-2 Populus tr... 52 5e-005
gb|DV466514.1|DV466514 MTUNUL1.P6.F09 NUL Populus fremontii... 52 5e-005
gb|CA825550.1|CA825550 R60H06 two-month-old roots from clon... 46 0.003
gb|DT500032.1|DT500032 PX0011.BR_A05 PT-X-FL-A-1 Populus tr... 46 0.003
gb|BI071607.1|BI071607 C060P75U Populus strain T89 leaves P... 44 0.012
gb|BU812637.1|BU812637 UL98TG02 Populus leaf cDNA library P... 44 0.012
gb|BU829974.1|BU829974 T002D07 Populus apical shoot cDNA li... 44 0.012
gb|BU834782.1|BU834782 T065F06 Populus apical shoot cDNA li... 44 0.012
gb|CA927406.1|CA927406 MTU6CR.P8.F04 Aspen root cDNA Librar... 44 0.012
gb|CV256088.1|CV256088 WS0242.B21_O11 PTxD-ICC-N-A-14 Popul... 44 0.012
gb|CX653969.1|CX653969 PO02011A02 Poplar SC cDNA library Po... 44 0.012
gb|CX655073.1|CX655073 PO01004E04 Poplar SC cDNA library Po... 44 0.012
gb|DN499518.1|DN499518 T065F06.5pR Populus shoot meristem c... 44 0.012
gb|DT508868.1|DT508868 WS02422.BR_C14 PTxD-ICC-N-A-14 Popul... 44 0.012
gb|DT513477.1|DT513477 WS02422.B21_C14 PTxD-ICC-N-A-14 Popu... 44 0.012
gb|DT517604.1|DT517604 WS02434.B21_M13 PTxD-ICC-N-A-14 Popu... 44 0.012
gb|BI123629.1|BI123629 I026P38P Populus leaf cDNA library P... 42 0.049
gb|BU817816.1|BU817816 UA21CPD07 Populus tremula cambium cD... 42 0.049
gb|CK105572.1|CK105572 UA21CPD07.5pR Populus dormant cambiu... 42 0.049
gb|DT478880.1|DT478880 WS02524.BR_B04 PT-MB-N-A-15 Populus ... 42 0.049
gb|DT480800.1|DT480800 WS02529.BR_P13 PT-MB-N-A-15 Populus ... 42 0.049
gb|DT495893.1|DT495893 WS01121.BR_M17 PT-P-FL-A-2 Populus t... 42 0.049
gb|DT499174.1|DT499174 WS0117.BR_I09 PT-P-FL-A-2 Populus tr... 42 0.049
gb|DT509504.1|DT509504 WS02423.BR_O12 PTxD-ICC-N-A-14 Popul... 42 0.049
gb|BI128714.1|BI128714 G080P41Y Populus cambium cDNA librar... 40 0.20
gb|BU880481.1|BU880481 UM49TF12 Populus flower cDNA library... 40 0.20
gb|CA926801.1|CA926801 MTU6CR.P1.C11 Aspen root cDNA Librar... 40 0.20
gb|CA926960.1|CA926960 MTU6CR.P3.C07 Aspen root cDNA Librar... 40 0.20
gb|CA926963.1|CA926963 MTU6CR.P3.C10 Aspen root cDNA Librar... 40 0.20
gb|CA927139.1|CA927139 MTU6CR.P5.E01 Aspen root cDNA Librar... 40 0.20
gb|CA927296.1|CA927296 MTU6CR.P7.C08 Aspen root cDNA Librar... 40 0.20
gb|CA927461.1|CA927461 MTU6CR.P9.C08 Aspen root cDNA Librar... 40 0.20
gb|CA932907.1|CA932907 MTU5CS.P1.A07 Aspen stem cDNA Librar... 40 0.20
gb|CF119065.1|CF119065 MTU10CS.P13.A06 Aspen stem cDNA Libr... 40 0.20
gb|CK110199.1|CK110199 N054A12 Populus bark cDNA library Po... 40 0.20
gb|CK110566.1|CK110566 N068B12 Populus bark cDNA library Po... 40 0.20
gb|AJ772752.1|AJ772752 AJ772752 Populus euphratica shoot in... 40 0.20
gb|AJ778011.1|AJ778011 AJ778011 Populus euphratica root 3-6... 40 0.20
gb|DV465987.1|DV465987 MTUNUL1.P45.G09 NUL Populus fremonti... 40 0.20
>gb|BU826636.1|BU826636 UK122TH12 Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 676
Score = 52.0 bits (26), Expect = 5e-005
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 409 gacgagatcgacttcgagttcctggggaac 438
||||||||||||||||||||| ||||||||
Sbjct: 385 gacgagatcgacttcgagttcttggggaac 414
>gb|BU832161.1|BU832161 T030B03 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 655
Score = 52.0 bits (26), Expect = 5e-005
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 409 gacgagatcgacttcgagttcctggggaac 438
||||||||||||||||||||| ||||||||
Sbjct: 372 gacgagatcgacttcgagttcttggggaac 401
>gb|BU865284.1|BU865284 S051E06 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 584
Score = 52.0 bits (26), Expect = 5e-005
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 409 gacgagatcgacttcgagttcctggggaac 438
||||||||||||||||||||| ||||||||
Sbjct: 360 gacgagatcgacttcgagttcttggggaac 389
>gb|BU866197.1|BU866197 S063H03 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 587
Score = 52.0 bits (26), Expect = 5e-005
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 409 gacgagatcgacttcgagttcctggggaac 438
||||||||||||||||||||| ||||||||
Sbjct: 369 gacgagatcgacttcgagttcttggggaac 398
>gb|BU893215.1|BU893215 P074G09 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 603
Score = 52.0 bits (26), Expect = 5e-005
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 409 gacgagatcgacttcgagttcctggggaac 438
||||||||||||||||||||| ||||||||
Sbjct: 379 gacgagatcgacttcgagttcttggggaac 408
>gb|CF231175.1|CF231175 PtaC0018C7C0705 Poplar cDNA library from cambial zone Populus alba
x Populus tremula cDNA 5', mRNA sequence
Length = 733
Score = 52.0 bits (26), Expect = 5e-005
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 409 gacgagatcgacttcgagttcctggggaac 438
||||||||||||||||||||| ||||||||
Sbjct: 380 gacgagatcgacttcgagttcttggggaac 409
>gb|CF232558.1|CF232558 PtaJXO0011H4H0416 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 636
Score = 52.0 bits (26), Expect = 5e-005
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 409 gacgagatcgacttcgagttcctggggaac 438
||||||||||||||||||||| ||||||||
Sbjct: 240 gacgagatcgacttcgagttcttggggaac 269
>gb|CN520892.1|CN520892 GQ0107.B3_B21 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0107_B21 5', mRNA sequence
Length = 793
Score = 52.0 bits (26), Expect = 5e-005
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 409 gacgagatcgacttcgagttcctggggaac 438
||||||||||||||||||||| ||||||||
Sbjct: 343 gacgagatcgacttcgagttcttggggaac 372
>gb|CN523304.1|CN523304 GQ015M01.B3_L01 GQ015 Populus trichocarpa x Populus deltoides cDNA
clone GQ015M01_L01 5', mRNA sequence
Length = 696
Score = 52.0 bits (26), Expect = 5e-005
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 409 gacgagatcgacttcgagttcctggggaac 438
||||||||||||||||||||| ||||||||
Sbjct: 380 gacgagatcgacttcgagttcttggggaac 409
>gb|CN549971.1|CN549971 GQ0243.B3_C07 GQ024 Populus trichocarpa x Populus deltoides cDNA
clone GQ0243_C07 5', mRNA sequence
Length = 514
Score = 52.0 bits (26), Expect = 5e-005
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 409 gacgagatcgacttcgagttcctggggaac 438
||||||||||||||||||||| ||||||||
Sbjct: 485 gacgagatcgacttcgagttcttggggaac 456
>gb|CV236170.1|CV236170 WS01223.B21_B16 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01223_B16 3', mRNA sequence
Length = 838
Score = 52.0 bits (26), Expect = 5e-005
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 409 gacgagatcgacttcgagttcctggggaac 438
||||||||||||||||||||| ||||||||
Sbjct: 822 gacgagatcgacttcgagttcttggggaac 793
>gb|CV237332.1|CV237332 WS01227.B21.1_I01 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01227_I01 3', mRNA sequence
Length = 870
Score = 52.0 bits (26), Expect = 5e-005
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 409 gacgagatcgacttcgagttcctggggaac 438
||||||||||||||||||||| ||||||||
Sbjct: 822 gacgagatcgacttcgagttcttggggaac 793
>gb|CV270106.1|CV270106 WS0151.B21_B16 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0151_B16 3', mRNA sequence
Length = 875
Score = 52.0 bits (26), Expect = 5e-005
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 409 gacgagatcgacttcgagttcctggggaac 438
||||||||||||||||||||| ||||||||
Sbjct: 836 gacgagatcgacttcgagttcttggggaac 807
>gb|CX659340.1|CX659340 PO01029E03 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01029E03 5', mRNA sequence
Length = 601
Score = 52.0 bits (26), Expect = 5e-005
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 409 gacgagatcgacttcgagttcctggggaac 438
||||||||||||||||||||| ||||||||
Sbjct: 370 gacgagatcgacttcgagttcttggggaac 399
>gb|BP926448.1|BP926448 BP926448 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-059_D16.f 5', mRNA sequence
Length = 539
Score = 52.0 bits (26), Expect = 5e-005
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 409 gacgagatcgacttcgagttcctggggaac 438
||||||||||||||||||||| ||||||||
Sbjct: 384 gacgagatcgacttcgagttcttggggaac 413
>gb|BP928728.1|BP928728 BP928728 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-087_L18.f 5', mRNA sequence
Length = 402
Score = 52.0 bits (26), Expect = 5e-005
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 409 gacgagatcgacttcgagttcctggggaac 438
||||||||||||||||||||| ||||||||
Sbjct: 370 gacgagatcgacttcgagttcttggggaac 399
>gb|DT472846.1|DT472846 WS01227.BR_I01 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01227_I01 5', mRNA sequence
Length = 853
Score = 52.0 bits (26), Expect = 5e-005
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 409 gacgagatcgacttcgagttcctggggaac 438
||||||||||||||||||||| ||||||||
Sbjct: 389 gacgagatcgacttcgagttcttggggaac 418
>gb|DT479295.1|DT479295 WS02525.BR_G07 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02525_G07 5', mRNA sequence
Length = 751
Score = 52.0 bits (26), Expect = 5e-005
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 409 gacgagatcgacttcgagttcctggggaac 438
||||||||||||||||||||| ||||||||
Sbjct: 366 gacgagatcgacttcgagttcttggggaac 395
>gb|DT495090.1|DT495090 WS0112.BR_F17 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0112_F17
5', mRNA sequence
Length = 627
Score = 52.0 bits (26), Expect = 5e-005
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 409 gacgagatcgacttcgagttcctggggaac 438
||||||||||||||||||||| ||||||||
Sbjct: 392 gacgagatcgacttcgagttcttggggaac 421
>gb|DV466514.1|DV466514 MTUNUL1.P6.F09 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 678
Score = 52.0 bits (26), Expect = 5e-005
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 409 gacgagatcgacttcgagttcctggggaac 438
||||||||||||||||||||| ||||||||
Sbjct: 353 gacgagatcgacttcgagttcttggggaac 382
>gb|CA825550.1|CA825550 R60H06 two-month-old roots from clone 'Beaupre' Populus trichocarpa
x Populus deltoides cDNA 5', mRNA sequence
Length = 573
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 88 cgatcgatcgatcgatcgagcga 110
|||||||||||||||||||||||
Sbjct: 96 cgatcgatcgatcgatcgagcga 118
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 88 cgatcgatcgatcgatcgagcgagcga 114
||||||||||||||||||| |||||||
Sbjct: 92 cgatcgatcgatcgatcgatcgagcga 118
>gb|DT500032.1|DT500032 PX0011.BR_A05 PT-X-FL-A-1 Populus trichocarpa cDNA clone PX0011_A05
5', mRNA sequence
Length = 632
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 88 cgatcgatcgatcgatcgagcga 110
|||||||||||||||||||||||
Sbjct: 124 cgatcgatcgatcgatcgagcga 146
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 88 cgatcgatcgatcgatcgagcgagcga 114
||||||||||||||||||| |||||||
Sbjct: 120 cgatcgatcgatcgatcgatcgagcga 146
>gb|BI071607.1|BI071607 C060P75U Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 399
Score = 44.1 bits (22), Expect = 0.012
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 409 gacgagatcgacttcgagttcctggg 434
||||||||||||||||||||| ||||
Sbjct: 243 gacgagatcgacttcgagttcttggg 268
>gb|BU812637.1|BU812637 UL98TG02 Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 642
Score = 44.1 bits (22), Expect = 0.012
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 409 gacgagatcgacttcgagttcctggg 434
||||||||||||||||||||| ||||
Sbjct: 357 gacgagatcgacttcgagttcttggg 382
>gb|BU829974.1|BU829974 T002D07 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 713
Score = 44.1 bits (22), Expect = 0.012
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 409 gacgagatcgacttcgagttcctggg 434
||||||||||||||||||||| ||||
Sbjct: 259 gacgagatcgacttcgagttcttggg 284
Score = 40.1 bits (20), Expect = 0.20
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 721 accgactggtccaaggcgcccttc 744
||||||||| ||||||||||||||
Sbjct: 571 accgactggaccaaggcgcccttc 594
>gb|BU834782.1|BU834782 T065F06 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 629
Score = 44.1 bits (22), Expect = 0.012
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 883 tacatgatctacaactactgcaccga 908
|||||||| |||||||||||||||||
Sbjct: 414 tacatgatttacaactactgcaccga 439
>gb|CA927406.1|CA927406 MTU6CR.P8.F04 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 616
Score = 44.1 bits (22), Expect = 0.012
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 409 gacgagatcgacttcgagttcctggg 434
||||||||||||||||||||| ||||
Sbjct: 370 gacgagatcgacttcgagttcttggg 345
>gb|CV256088.1|CV256088 WS0242.B21_O11 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0242_O11 3', mRNA sequence
Length = 909
Score = 44.1 bits (22), Expect = 0.012
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 409 gacgagatcgacttcgagttcctggggaac 438
||||||||||||||||||||| || |||||
Sbjct: 822 gacgagatcgacttcgagttcttgaggaac 793
>gb|CX653969.1|CX653969 PO02011A02 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02011A02 5', mRNA sequence
Length = 186
Score = 44.1 bits (22), Expect = 0.012
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 409 gacgagatcgacttcgagttcctggg 434
||||||||||||||||||||| ||||
Sbjct: 140 gacgagatcgacttcgagttcttggg 165
>gb|CX655073.1|CX655073 PO01004E04 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01004E04 5', mRNA sequence
Length = 620
Score = 44.1 bits (22), Expect = 0.012
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 409 gacgagatcgacttcgagttcctggg 434
||||||||||||||||||||| ||||
Sbjct: 329 gacgagatcgacttcgagttcttggg 354
>gb|DN499518.1|DN499518 T065F06.5pR Populus shoot meristem cDNA library Populus tremula x
Populus tremuloides cDNA clone T065F06 5', mRNA sequence
Length = 619
Score = 44.1 bits (22), Expect = 0.012
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 883 tacatgatctacaactactgcaccga 908
|||||||| |||||||||||||||||
Sbjct: 412 tacatgatttacaactactgcaccga 437
>gb|DT508868.1|DT508868 WS02422.BR_C14 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02422_C14 5', mRNA sequence
Length = 880
Score = 44.1 bits (22), Expect = 0.012
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 409 gacgagatcgacttcgagttcctggg 434
||||||||||||||||||||| ||||
Sbjct: 419 gacgagatcgacttcgagttcttggg 444
>gb|DT513477.1|DT513477 WS02422.B21_C14 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02422_C14 3', mRNA sequence
Length = 830
Score = 44.1 bits (22), Expect = 0.012
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 409 gacgagatcgacttcgagttcctggg 434
||||||||||||||||||||| ||||
Sbjct: 815 gacgagatcgacttcgagttcttggg 790
>gb|DT517604.1|DT517604 WS02434.B21_M13 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02434_M13 3', mRNA sequence
Length = 841
Score = 44.1 bits (22), Expect = 0.012
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 409 gacgagatcgacttcgagttcctggg 434
||||||||||||||||||||| ||||
Sbjct: 841 gacgagatcgacttcgagttcttggg 816
>gb|BI123629.1|BI123629 I026P38P Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 448
Score = 42.1 bits (21), Expect = 0.049
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 90 atcgatcgatcgatcgagcga 110
|||||||||||||||||||||
Sbjct: 46 atcgatcgatcgatcgagcga 66
>gb|BU817816.1|BU817816 UA21CPD07 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 489
Score = 42.1 bits (21), Expect = 0.049
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 137 tggcggcggtgctgctgctgc 157
|||||||||||||||||||||
Sbjct: 101 tggcggcggtgctgctgctgc 81
>gb|CK105572.1|CK105572 UA21CPD07.5pR Populus dormant cambium cDNA library Populus tremula
cDNA clone UA21CPD07 5', mRNA sequence
Length = 639
Score = 42.1 bits (21), Expect = 0.049
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 137 tggcggcggtgctgctgctgc 157
|||||||||||||||||||||
Sbjct: 81 tggcggcggtgctgctgctgc 61
>gb|DT478880.1|DT478880 WS02524.BR_B04 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02524_B04 5', mRNA sequence
Length = 729
Score = 42.1 bits (21), Expect = 0.049
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 137 tggcggcggtgctgctgctgc 157
|||||||||||||||||||||
Sbjct: 74 tggcggcggtgctgctgctgc 54
>gb|DT480800.1|DT480800 WS02529.BR_P13 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02529_P13 5', mRNA sequence
Length = 853
Score = 42.1 bits (21), Expect = 0.049
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 137 tggcggcggtgctgctgctgc 157
|||||||||||||||||||||
Sbjct: 21 tggcggcggtgctgctgctgc 1
>gb|DT495893.1|DT495893 WS01121.BR_M17 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01121_M17 5', mRNA sequence
Length = 757
Score = 42.1 bits (21), Expect = 0.049
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 137 tggcggcggtgctgctgctgc 157
|||||||||||||||||||||
Sbjct: 151 tggcggcggtgctgctgctgc 131
>gb|DT499174.1|DT499174 WS0117.BR_I09 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0117_I09
5', mRNA sequence
Length = 444
Score = 42.1 bits (21), Expect = 0.049
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 137 tggcggcggtgctgctgctgc 157
|||||||||||||||||||||
Sbjct: 100 tggcggcggtgctgctgctgc 80
>gb|DT509504.1|DT509504 WS02423.BR_O12 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02423_O12 5', mRNA sequence
Length = 650
Score = 42.1 bits (21), Expect = 0.049
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 137 tggcggcggtgctgctgctgc 157
|||||||||||||||||||||
Sbjct: 79 tggcggcggtgctgctgctgc 59
>gb|BI128714.1|BI128714 G080P41Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 493
Score = 40.1 bits (20), Expect = 0.20
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 89 gatcgatcgatcgatcgagc 108
||||||||||||||||||||
Sbjct: 219 gatcgatcgatcgatcgagc 238
>gb|BU880481.1|BU880481 UM49TF12 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 534
Score = 40.1 bits (20), Expect = 0.20
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 88 cgatcgatcgatcgatcgag 107
||||||||||||||||||||
Sbjct: 23 cgatcgatcgatcgatcgag 42
>gb|CA926801.1|CA926801 MTU6CR.P1.C11 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 267
Score = 40.1 bits (20), Expect = 0.20
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 724 gactggtccaaggcgccctt 743
||||||||||||||||||||
Sbjct: 143 gactggtccaaggcgccctt 124
>gb|CA926960.1|CA926960 MTU6CR.P3.C07 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 296
Score = 40.1 bits (20), Expect = 0.20
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 724 gactggtccaaggcgccctt 743
||||||||||||||||||||
Sbjct: 154 gactggtccaaggcgccctt 173
>gb|CA926963.1|CA926963 MTU6CR.P3.C10 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 267
Score = 40.1 bits (20), Expect = 0.20
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 724 gactggtccaaggcgccctt 743
||||||||||||||||||||
Sbjct: 125 gactggtccaaggcgccctt 144
>gb|CA927139.1|CA927139 MTU6CR.P5.E01 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 267
Score = 40.1 bits (20), Expect = 0.20
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 724 gactggtccaaggcgccctt 743
||||||||||||||||||||
Sbjct: 143 gactggtccaaggcgccctt 124
>gb|CA927296.1|CA927296 MTU6CR.P7.C08 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 296
Score = 40.1 bits (20), Expect = 0.20
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 724 gactggtccaaggcgccctt 743
||||||||||||||||||||
Sbjct: 154 gactggtccaaggcgccctt 173
>gb|CA927461.1|CA927461 MTU6CR.P9.C08 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 270
Score = 40.1 bits (20), Expect = 0.20
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 724 gactggtccaaggcgccctt 743
||||||||||||||||||||
Sbjct: 125 gactggtccaaggcgccctt 144
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 76,093
Number of Sequences: 369679
Number of extensions: 76093
Number of successful extensions: 23478
Number of sequences better than 0.5: 57
Number of HSP's better than 0.5 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23341
Number of HSP's gapped (non-prelim): 119
length of query: 1223
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1204
effective length of database: 196,384,763
effective search space: 236447254652
effective search space used: 236447254652
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)