BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5532690.2.1
(863 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CK099366.1|CK099366 A064P56.5pR Hybrid aspen plasmid lib... 50 1e-004
gb|AI164515.1|AI164515 A064P56U Hybrid aspen plasmid librar... 42 0.035
>gb|CK099366.1|CK099366 A064P56.5pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A064P56 5', mRNA sequence
Length = 523
Score = 50.1 bits (25), Expect = 1e-004
Identities = 62/73 (84%), Gaps = 1/73 (1%)
Strand = Plus / Minus
Query: 648 tccagtgtaaa-atcgatatgttctcccagggtagcctcgtgaaggatcagctctcatgt 706
||||||||||| | ||||| |||| || ||||| || || ||||||| || ||||||||
Sbjct: 396 tccagtgtaaacaccgataggttcgtcctgggtatccacgagaaggattaggtctcatgt 337
Query: 707 tcatatcagtcat 719
|||||||||||||
Sbjct: 336 tcatatcagtcat 324
>gb|AI164515.1|AI164515 A064P56U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 392
Score = 42.1 bits (21), Expect = 0.035
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 699 tctcatgttcatatcagtcat 719
|||||||||||||||||||||
Sbjct: 296 tctcatgttcatatcagtcat 276
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 93,166
Number of Sequences: 369679
Number of extensions: 93166
Number of successful extensions: 23421
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23417
Number of HSP's gapped (non-prelim): 4
length of query: 863
length of database: 203,408,664
effective HSP length: 19
effective length of query: 844
effective length of database: 196,384,763
effective search space: 165748739972
effective search space used: 165748739972
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)