BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5352090.2.1
(915 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX659089.1|CX659089 PO01026D05 Poplar SC cDNA library Po... 56 2e-006
gb|BU830630.1|BU830630 T011A03 Populus apical shoot cDNA li... 50 2e-004
gb|BU862796.1|BU862796 S020B03 Populus imbibed seed cDNA li... 50 2e-004
gb|BU881495.1|BU881495 UM63TE04 Populus flower cDNA library... 50 2e-004
gb|CA826216.1|CA826216 R74E08 two-month-old roots from clon... 50 2e-004
gb|CK090502.1|CK090502 F009P52.3pR Populus flower cDNA libr... 50 2e-004
gb|CK100919.1|CK100919 F009P52.5pR Populus flower cDNA libr... 50 2e-004
gb|AJ777805.1|AJ777805 AJ777805 Populus euphratica root 3-6... 50 2e-004
gb|AJ778661.1|AJ778661 AJ778661 Populus euphratica cambium ... 50 2e-004
gb|CV130845.1|CV130845 X9SP06c03 Populus stem seasonal libr... 50 2e-004
gb|CV232380.1|CV232380 WS0197.B21_G16 PT-DX-N-A-10 Populus ... 50 2e-004
gb|CV234308.1|CV234308 WS01214.B21_H04 PT-GT-FL-A-3 Populus... 50 2e-004
gb|CV238442.1|CV238442 WS0126.B21_K17 PT-GT-FL-A-3 Populus ... 50 2e-004
gb|CV239787.1|CV239787 WS0233.B21_H17 PT-MB-A-13 Populus tr... 50 2e-004
gb|CV239865.1|CV239865 WS0233.B21_L08 PT-MB-A-13 Populus tr... 50 2e-004
gb|CV276895.1|CV276895 WS0142.B21_B10 PTxD-IL-A-5 Populus t... 50 2e-004
gb|CX169614.1|CX169614 G08_69-53_14.ab1 leaf inoculated wit... 50 2e-004
gb|CX169882.1|CX169882 B11_69-49_03.ab1 leaf inoculated wit... 50 2e-004
gb|CX170315.1|CX170315 B08_69-8_04.ab1 leaf inoculated with... 50 2e-004
gb|CX171500.1|CX171500 F01_69-19_11.ab1 leaf inoculated wit... 50 2e-004
gb|CX171926.1|CX171926 E01_69-116_09.ab1 leaf inoculated wi... 50 2e-004
gb|CX175769.1|CX175769 H08_69-13_16.ab1 leaf inoculated wit... 50 2e-004
gb|CX176824.1|CX176824 C02_69-83_06.ab1 leaf inoculated wit... 50 2e-004
gb|DT475295.1|DT475295 WS0126.BR_K17 PT-GT-FL-A-3 Populus t... 50 2e-004
gb|DT477531.1|DT477531 WS02520.BR_D16 PT-MB-N-A-15 Populus ... 50 2e-004
gb|DT482586.1|DT482586 WS02520.B21_D16 PT-MB-N-A-15 Populus... 50 2e-004
gb|DT490959.1|DT490959 WS02546.C21.1_G21 PT-MB-N-A-15 Popul... 50 2e-004
gb|DT506339.1|DT506339 WS0189.C21_F04 PTxD-IL-N-A-9 Populus... 50 2e-004
gb|DV464439.1|DV464439 MTUNUL1.P27.E08 NUL Populus fremonti... 50 2e-004
gb|DV466595.1|DV466595 MTUNUL1.P7.F11 NUL Populus fremontii... 50 2e-004
gb|BU866913.1|BU866913 S072B11 Populus imbibed seed cDNA li... 48 6e-004
gb|CK106440.1|CK106440 UB20CPH01.5pR Populus active cambium... 48 6e-004
gb|BU834640.1|BU834640 T063H04 Populus apical shoot cDNA li... 44 0.009
gb|BU836794.1|BU836794 T091A03 Populus apical shoot cDNA li... 44 0.009
gb|BU895666.1|BU895666 X029B05 Populus wood cDNA library Po... 44 0.009
gb|AJ776405.1|AJ776405 AJ776405 Populus euphratica root 3-6... 44 0.009
gb|DN502651.1|DN502651 X029B05.5pR Populus wood cDNA librar... 44 0.009
gb|BU824003.1|BU824003 UB59CPB06 Populus tremula cambium cD... 42 0.037
gb|BU867394.1|BU867394 S077F10 Populus imbibed seed cDNA li... 42 0.037
gb|CX657848.1|CX657848 PO01006A04 Poplar SC cDNA library Po... 42 0.037
gb|CX657851.1|CX657851 PO01006A08 Poplar SC cDNA library Po... 42 0.037
gb|AY675562.1| Populus tomentosa myb family transcription f... 42 0.037
gb|BU873815.1|BU873815 Q060C05 Populus flower cDNA library ... 40 0.15
>gb|CX659089.1|CX659089 PO01026D05 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01026D05 5', mRNA sequence
Length = 694
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 630 tgagagcgcagatggaagtccaaagaagactgcatgaaca 669
|||||| |||||||||||||||| ||||| ||||||||||
Sbjct: 528 tgagagtgcagatggaagtccaacgaagattgcatgaaca 567
>gb|BU830630.1|BU830630 T011A03 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 613
Score = 50.1 bits (25), Expect = 2e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 630 tgagagcgcagatggaagtccaaagaagactgcatga 666
|||||| |||||||||||||||| ||||| |||||||
Sbjct: 574 tgagagtgcagatggaagtccaacgaagattgcatga 610
>gb|BU862796.1|BU862796 S020B03 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 694
Score = 50.1 bits (25), Expect = 2e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 630 tgagagcgcagatggaagtccaaagaagactgcatga 666
|||||| |||||||||||||||| ||||| |||||||
Sbjct: 201 tgagagtgcagatggaagtccaacgaagattgcatga 237
>gb|BU881495.1|BU881495 UM63TE04 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 549
Score = 50.1 bits (25), Expect = 2e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 630 tgagagcgcagatggaagtccaaagaagactgcatga 666
|||||| |||||||||||||||| ||||| |||||||
Sbjct: 258 tgagagtgcagatggaagtccaacgaagattgcatga 294
>gb|CA826216.1|CA826216 R74E08 two-month-old roots from clone 'Beaupre' Populus trichocarpa
x Populus deltoides cDNA 5', mRNA sequence
Length = 632
Score = 50.1 bits (25), Expect = 2e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 630 tgagagcgcagatggaagtccaaagaagactgcatga 666
|||||| |||||||||||||||| ||||| |||||||
Sbjct: 298 tgagagtgcagatggaagtccaacgaagattgcatga 334
>gb|CK090502.1|CK090502 F009P52.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F009P52 3', mRNA sequence
Length = 797
Score = 50.1 bits (25), Expect = 2e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 630 tgagagcgcagatggaagtccaaagaagactgcatga 666
|||||| |||||||||||||||| ||||| |||||||
Sbjct: 670 tgagagtgcagatggaagtccaacgaagattgcatga 634
>gb|CK100919.1|CK100919 F009P52.5pR Populus flower cDNA library Populus trichocarpa cDNA
clone F009P52 5', mRNA sequence
Length = 538
Score = 50.1 bits (25), Expect = 2e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 630 tgagagcgcagatggaagtccaaagaagactgcatga 666
|||||| |||||||||||||||| ||||| |||||||
Sbjct: 420 tgagagtgcagatggaagtccaacgaagattgcatga 456
>gb|AJ777805.1|AJ777805 AJ777805 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400035D01F1, mRNA sequence
Length = 689
Score = 50.1 bits (25), Expect = 2e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 630 tgagagcgcagatggaagtccaaagaagactgcatga 666
|||||| |||||||||||||||| ||||| |||||||
Sbjct: 414 tgagagtgcagatggaagtccaacgaagattgcatga 450
>gb|AJ778661.1|AJ778661 AJ778661 Populus euphratica cambium 3-6 months Populus euphratica
cDNA clone P0000600004C06F1, mRNA sequence
Length = 748
Score = 50.1 bits (25), Expect = 2e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 630 tgagagcgcagatggaagtccaaagaagactgcatga 666
|||||| |||||||||||||||| ||||| |||||||
Sbjct: 354 tgagagtgcagatggaagtccaacgaagattgcatga 390
>gb|CV130845.1|CV130845 X9SP06c03 Populus stem seasonal library Populus deltoides cDNA,
mRNA sequence
Length = 878
Score = 50.1 bits (25), Expect = 2e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 630 tgagagcgcagatggaagtccaaagaagactgcatga 666
|||||| |||||||||||||||| ||||| |||||||
Sbjct: 488 tgagagtgcagatggaagtccaacgaagattgcatga 524
>gb|CV232380.1|CV232380 WS0197.B21_G16 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0197_G16 3', mRNA sequence
Length = 772
Score = 50.1 bits (25), Expect = 2e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 630 tgagagcgcagatggaagtccaaagaagactgcatga 666
|||||| |||||||||||||||| ||||| |||||||
Sbjct: 684 tgagagtgcagatggaagtccaacgaagattgcatga 648
>gb|CV234308.1|CV234308 WS01214.B21_H04 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01214_H04 3', mRNA sequence
Length = 692
Score = 50.1 bits (25), Expect = 2e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 630 tgagagcgcagatggaagtccaaagaagactgcatga 666
|||||| |||||||||||||||| ||||| |||||||
Sbjct: 645 tgagagtgcagatggaagtccaacgaagattgcatga 609
>gb|CV238442.1|CV238442 WS0126.B21_K17 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0126_K17 3', mRNA sequence
Length = 691
Score = 50.1 bits (25), Expect = 2e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 630 tgagagcgcagatggaagtccaaagaagactgcatga 666
|||||| |||||||||||||||| ||||| |||||||
Sbjct: 683 tgagagtgcagatggaagtccaacgaagattgcatga 647
>gb|CV239787.1|CV239787 WS0233.B21_H17 PT-MB-A-13 Populus trichocarpa cDNA clone WS0233_H17
3', mRNA sequence
Length = 734
Score = 50.1 bits (25), Expect = 2e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 630 tgagagcgcagatggaagtccaaagaagactgcatga 666
|||||| |||||||||||||||| ||||| |||||||
Sbjct: 661 tgagagtgcagatggaagtccaacgaagattgcatga 625
>gb|CV239865.1|CV239865 WS0233.B21_L08 PT-MB-A-13 Populus trichocarpa cDNA clone WS0233_L08
3', mRNA sequence
Length = 730
Score = 50.1 bits (25), Expect = 2e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 630 tgagagcgcagatggaagtccaaagaagactgcatga 666
|||||| |||||||||||||||| ||||| |||||||
Sbjct: 659 tgagagtgcagatggaagtccaacgaagattgcatga 623
>gb|CV276895.1|CV276895 WS0142.B21_B10 PTxD-IL-A-5 Populus trichocarpa x Populus deltoides
cDNA clone WS0142_B10 3', mRNA sequence
Length = 909
Score = 50.1 bits (25), Expect = 2e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 630 tgagagcgcagatggaagtccaaagaagactgcatga 666
|||||| |||||||||||||||| ||||| |||||||
Sbjct: 659 tgagagtgcagatggaagtccaacgaagattgcatga 623
>gb|CX169614.1|CX169614 G08_69-53_14.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 713
Score = 50.1 bits (25), Expect = 2e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 630 tgagagcgcagatggaagtccaaagaagactgcatga 666
|||||| |||||||||||||||| ||||| |||||||
Sbjct: 579 tgagagtgcagatggaagtccaacgaagattgcatga 615
>gb|CX169882.1|CX169882 B11_69-49_03.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 715
Score = 50.1 bits (25), Expect = 2e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 630 tgagagcgcagatggaagtccaaagaagactgcatga 666
|||||| |||||||||||||||| ||||| |||||||
Sbjct: 581 tgagagtgcagatggaagtccaacgaagattgcatga 617
>gb|CX170315.1|CX170315 B08_69-8_04.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 666
Score = 50.1 bits (25), Expect = 2e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 630 tgagagcgcagatggaagtccaaagaagactgcatga 666
|||||| |||||||||||||||| ||||| |||||||
Sbjct: 158 tgagagtgcagatggaagtccaacgaagattgcatga 194
>gb|CX171500.1|CX171500 F01_69-19_11.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 706
Score = 50.1 bits (25), Expect = 2e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 630 tgagagcgcagatggaagtccaaagaagactgcatga 666
|||||| |||||||||||||||| ||||| |||||||
Sbjct: 113 tgagagtgcagatggaagtccaacgaagattgcatga 149
>gb|CX171926.1|CX171926 E01_69-116_09.ab1 leaf inoculated with Marssonia pathogen of
Populus deltoides Populus deltoides cDNA, mRNA sequence
Length = 678
Score = 50.1 bits (25), Expect = 2e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 630 tgagagcgcagatggaagtccaaagaagactgcatga 666
|||||| |||||||||||||||| ||||| |||||||
Sbjct: 571 tgagagtgcagatggaagtccaacgaagattgcatga 607
>gb|CX175769.1|CX175769 H08_69-13_16.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 664
Score = 50.1 bits (25), Expect = 2e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 630 tgagagcgcagatggaagtccaaagaagactgcatga 666
|||||| |||||||||||||||| ||||| |||||||
Sbjct: 63 tgagagtgcagatggaagtccaacgaagattgcatga 99
>gb|CX176824.1|CX176824 C02_69-83_06.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 603
Score = 50.1 bits (25), Expect = 2e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 630 tgagagcgcagatggaagtccaaagaagactgcatga 666
|||||| |||||||||||||||| ||||| |||||||
Sbjct: 158 tgagagtgcagatggaagtccaacgaagattgcatga 194
>gb|DT475295.1|DT475295 WS0126.BR_K17 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0126_K17 5', mRNA sequence
Length = 643
Score = 50.1 bits (25), Expect = 2e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 630 tgagagcgcagatggaagtccaaagaagactgcatga 666
|||||| |||||||||||||||| ||||| |||||||
Sbjct: 600 tgagagtgcagatggaagtccaacgaagattgcatga 636
>gb|DT477531.1|DT477531 WS02520.BR_D16 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02520_D16 5', mRNA sequence
Length = 850
Score = 50.1 bits (25), Expect = 2e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 630 tgagagcgcagatggaagtccaaagaagactgcatga 666
|||||| |||||||||||||||| ||||| |||||||
Sbjct: 614 tgagagtgcagatggaagtccaacgaagattgcatga 650
>gb|DT482586.1|DT482586 WS02520.B21_D16 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02520_D16 3', mRNA sequence
Length = 860
Score = 50.1 bits (25), Expect = 2e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 630 tgagagcgcagatggaagtccaaagaagactgcatga 666
|||||| |||||||||||||||| ||||| |||||||
Sbjct: 629 tgagagtgcagatggaagtccaacgaagattgcatga 593
>gb|DT490959.1|DT490959 WS02546.C21.1_G21 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02546_G21 3', mRNA sequence
Length = 744
Score = 50.1 bits (25), Expect = 2e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 630 tgagagcgcagatggaagtccaaagaagactgcatga 666
|||||| |||||||||||||||| ||||| |||||||
Sbjct: 689 tgagagtgcagatggaagtccaacgaagattgcatga 653
>gb|DT506339.1|DT506339 WS0189.C21_F04 PTxD-IL-N-A-9 Populus trichocarpa x Populus
deltoides cDNA clone WS0189_F04 3', mRNA sequence
Length = 880
Score = 50.1 bits (25), Expect = 2e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 630 tgagagcgcagatggaagtccaaagaagactgcatga 666
|||||| |||||||||||||||| ||||| |||||||
Sbjct: 533 tgagagtgcagatggaagtccaacgaagattgcatga 569
>gb|DV464439.1|DV464439 MTUNUL1.P27.E08 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 835
Score = 50.1 bits (25), Expect = 2e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 630 tgagagcgcagatggaagtccaaagaagactgcatga 666
|||||| |||||||||||||||| ||||| |||||||
Sbjct: 466 tgagagtgcagatggaagtccaacgaagattgcatga 502
>gb|DV466595.1|DV466595 MTUNUL1.P7.F11 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 900
Score = 50.1 bits (25), Expect = 2e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 630 tgagagcgcagatggaagtccaaagaagactgcatga 666
|||||| |||||||||||||||| ||||| |||||||
Sbjct: 499 tgagagtgcagatggaagtccaacgaagattgcatga 535
>gb|BU866913.1|BU866913 S072B11 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 695
Score = 48.1 bits (24), Expect = 6e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 455 ctttttcacttgaagagccatcttcagaaata 486
|||||||| ||||||||||| |||||||||||
Sbjct: 349 ctttttcatttgaagagccaccttcagaaata 380
>gb|CK106440.1|CK106440 UB20CPH01.5pR Populus active cambium cDNA library Populus tremula
cDNA clone UB20CPH01 5', mRNA sequence
Length = 451
Score = 48.1 bits (24), Expect = 6e-004
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 434 atgggcgtcaagggtcttactctttttcacttgaagagccatcttcagaaat 485
||||| || |||||||| || |||| |||||||||||||| ||||||||||
Sbjct: 238 atgggagttaagggtctgaccctttatcacttgaagagccgccttcagaaat 289
>gb|BU834640.1|BU834640 T063H04 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 636
Score = 44.1 bits (22), Expect = 0.009
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 630 tgagagcgcagatggaagtccaaagaagactgca 663
|||||| |||||||||||||||| ||||| ||||
Sbjct: 426 tgagagtgcagatggaagtccaacgaagattgca 459
>gb|BU836794.1|BU836794 T091A03 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 607
Score = 44.1 bits (22), Expect = 0.009
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 630 tgagagcgcagatggaagtccaaagaagactgca 663
|||||| |||||||||||||||| ||||| ||||
Sbjct: 574 tgagagtgcagatggaagtccaacgaagattgca 607
>gb|BU895666.1|BU895666 X029B05 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 699
Score = 44.1 bits (22), Expect = 0.009
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 461 cacttgaagagccatcttcagaaatacagattagggaa 498
||||||||||||||| | ||||||||||| |||||||
Sbjct: 445 cacttgaagagccatttacagaaatacaggctagggaa 482
>gb|AJ776405.1|AJ776405 AJ776405 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400012G01F1, mRNA sequence
Length = 544
Score = 44.1 bits (22), Expect = 0.009
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 461 cacttgaagagccatcttcagaaatacagattagggaa 498
||||||||||||||| | ||||||||||| |||||||
Sbjct: 484 cacttgaagagccatttacagaaatacaggctagggaa 521
>gb|DN502651.1|DN502651 X029B05.5pR Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA clone X029B05 5', mRNA sequence
Length = 761
Score = 44.1 bits (22), Expect = 0.009
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 461 cacttgaagagccatcttcagaaatacagattagggaa 498
||||||||||||||| | ||||||||||| |||||||
Sbjct: 443 cacttgaagagccatttacagaaatacaggctagggaa 480
>gb|BU824003.1|BU824003 UB59CPB06 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 427
Score = 42.1 bits (21), Expect = 0.037
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 434 atgggcgtcaagggtcttactctttttcacttgaagagccatcttcagaaatacaga 490
||||| || ||||||||||| |||| ||| | || |||||||||||||||| ||||
Sbjct: 196 atgggtgtgaagggtcttaccctttaccacctcaaaagccatcttcagaaattcaga 252
>gb|BU867394.1|BU867394 S077F10 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 719
Score = 42.1 bits (21), Expect = 0.037
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 434 atgggcgtcaagggtcttactctttttcacttgaagagccatcttcagaaatacaga 490
||||| || ||||||||||| |||| ||| | || |||||||||||||||| ||||
Sbjct: 328 atgggtgtgaagggtcttaccctttaccacctcaaaagccatcttcagaaattcaga 384
>gb|CX657848.1|CX657848 PO01006A04 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01006A04 5', mRNA sequence
Length = 638
Score = 42.1 bits (21), Expect = 0.037
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 461 cacttgaagagccatcttcagaaatacag 489
||||||||||||||| | |||||||||||
Sbjct: 222 cacttgaagagccatttacagaaatacag 250
>gb|CX657851.1|CX657851 PO01006A08 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01006A08 5', mRNA sequence
Length = 610
Score = 42.1 bits (21), Expect = 0.037
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 461 cacttgaagagccatcttcagaaatacag 489
||||||||||||||| | |||||||||||
Sbjct: 222 cacttgaagagccatttacagaaatacag 250
>gb|AY675562.1| Populus tomentosa myb family transcription factor-related protein
mRNA, complete cds
Length = 1104
Score = 42.1 bits (21), Expect = 0.037
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 434 atgggcgtcaagggtcttactctttttcacttgaagagccatcttcagaaatacaga 490
||||| || ||||||||||| |||| ||| | || |||||||||||||||| ||||
Sbjct: 199 atgggtgtgaagggtcttaccctttaccacctcaaaagccatcttcagaaattcaga 255
>gb|BU873815.1|BU873815 Q060C05 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 682
Score = 40.1 bits (20), Expect = 0.15
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 455 ctttttcacttgaagagccatcttcagaaata 486
|||||||| || |||||||| |||||||||||
Sbjct: 379 ctttttcatttaaagagccaccttcagaaata 410
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 113,050
Number of Sequences: 369679
Number of extensions: 113050
Number of successful extensions: 31383
Number of sequences better than 0.5: 43
Number of HSP's better than 0.5 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31315
Number of HSP's gapped (non-prelim): 68
length of query: 915
length of database: 203,408,664
effective HSP length: 19
effective length of query: 896
effective length of database: 196,384,763
effective search space: 175960747648
effective search space used: 175960747648
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)