BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4790360.2.1
(667 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA931213.1|CA931213 MTU2TA.P4.A06 Aspen apex cDNA Librar... 54 7e-006
gb|CA931239.1|CA931239 MTU2TA.P4.E07 Aspen apex cDNA Librar... 54 7e-006
gb|CA933430.1|CA933430 MTU5CS.P7.H12 Aspen stem cDNA Librar... 54 7e-006
gb|CK092473.1|CK092473 G084P78.3pR Populus tension wood cDN... 54 7e-006
gb|CV255308.1|CV255308 WS02412.B21_K12 PTxD-ICC-N-A-14 Popu... 54 7e-006
gb|DT517578.1|DT517578 WS02434.B21_L09 PTxD-ICC-N-A-14 Popu... 54 7e-006
gb|CK096470.1|CK096470 UB15CPF09.3pR Populus active cambium... 48 4e-004
gb|CX655011.1|CX655011 PO01003G06 Poplar SC cDNA library Po... 48 4e-004
gb|CX655147.1|CX655147 PO02030E06 Poplar SC cDNA library Po... 48 4e-004
>gb|CA931213.1|CA931213 MTU2TA.P4.A06 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 376
Score = 54.0 bits (27), Expect = 7e-006
Identities = 57/67 (85%)
Strand = Plus / Minus
Query: 105 gaaacaacagtttccgtatgttcagcaacgaggacgttacaattggatcgtggatgcttg 164
|||| |||||||| | ||||||||||| ||||| || || ||||| |||||||||||||
Sbjct: 309 gaaataacagtttgagaatgttcagcaatgaggatgtcaccattgggtcgtggatgcttg 250
Query: 165 ctatgaa 171
| |||||
Sbjct: 249 caatgaa 243
>gb|CA931239.1|CA931239 MTU2TA.P4.E07 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 376
Score = 54.0 bits (27), Expect = 7e-006
Identities = 57/67 (85%)
Strand = Plus / Minus
Query: 105 gaaacaacagtttccgtatgttcagcaacgaggacgttacaattggatcgtggatgcttg 164
|||| |||||||| | ||||||||||| ||||| || || ||||| |||||||||||||
Sbjct: 309 gaaataacagtttgagaatgttcagcaatgaggatgtcaccattgggtcgtggatgcttg 250
Query: 165 ctatgaa 171
| |||||
Sbjct: 249 caatgaa 243
>gb|CA933430.1|CA933430 MTU5CS.P7.H12 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 111
Score = 54.0 bits (27), Expect = 7e-006
Identities = 57/67 (85%)
Strand = Plus / Minus
Query: 105 gaaacaacagtttccgtatgttcagcaacgaggacgttacaattggatcgtggatgcttg 164
|||||||||| || || ||||||||||| ||||| ||||||||||| | |||||||| |
Sbjct: 108 gaaacaacagctttcggatgttcagcaatgaggatgttacaattggtgcatggatgctgg 49
Query: 165 ctatgaa 171
| |||||
Sbjct: 48 caatgaa 42
>gb|CK092473.1|CK092473 G084P78.3pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G084P78 3', mRNA sequence
Length = 726
Score = 54.0 bits (27), Expect = 7e-006
Identities = 57/67 (85%)
Strand = Plus / Minus
Query: 105 gaaacaacagtttccgtatgttcagcaacgaggacgttacaattggatcgtggatgcttg 164
|||| |||||||| | ||||||||||| ||||| || || ||||| |||||||||||||
Sbjct: 459 gaaataacagtttgagaatgttcagcaatgaggatgtcaccattgggtcgtggatgcttg 400
Query: 165 ctatgaa 171
| |||||
Sbjct: 399 caatgaa 393
>gb|CV255308.1|CV255308 WS02412.B21_K12 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02412_K12 3', mRNA sequence
Length = 736
Score = 54.0 bits (27), Expect = 7e-006
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 105 gaaacaacagtttccgtatgttcagcaacgaggacgttacaat 147
|||||||||||||||| ||||||||||| || || ||||||||
Sbjct: 515 gaaacaacagtttccgaatgttcagcaatgaagatgttacaat 473
>gb|DT517578.1|DT517578 WS02434.B21_L09 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02434_L09 3', mRNA sequence
Length = 911
Score = 54.0 bits (27), Expect = 7e-006
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 105 gaaacaacagtttccgtatgttcagcaacgaggacgttacaat 147
|||||||||||||||| ||||||||||| || || ||||||||
Sbjct: 532 gaaacaacagtttccgaatgttcagcaatgaagatgttacaat 490
>gb|CK096470.1|CK096470 UB15CPF09.3pR Populus active cambium cDNA library Populus tremula
cDNA clone UB15CPF09 3', mRNA sequence
Length = 774
Score = 48.1 bits (24), Expect = 4e-004
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 108 acaacagtttccgtatgttcagcaacgaggacgttacaat 147
||||||||||||| ||||||||||| || || ||||||||
Sbjct: 375 acaacagtttccgaatgttcagcaatgaagatgttacaat 336
>gb|CX655011.1|CX655011 PO01003G06 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01003G06 5', mRNA sequence
Length = 693
Score = 48.1 bits (24), Expect = 4e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 108 acaacagtttccgtatgttcagcaacgaggacgttacaat 147
||||||||||||| ||||||||||| || || ||||||||
Sbjct: 391 acaacagtttccgaatgttcagcaatgaagatgttacaat 430
>gb|CX655147.1|CX655147 PO02030E06 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02030E06 5', mRNA sequence
Length = 600
Score = 48.1 bits (24), Expect = 4e-004
Identities = 66/80 (82%)
Strand = Plus / Plus
Query: 105 gaaacaacagtttccgtatgttcagcaacgaggacgttacaattggatcgtggatgcttg 164
|||||||||| || || |||| |||||| ||||| ||||||||||| | |||||||| |
Sbjct: 517 gaaacaacagctttcggatgtccagcaatgaggatgttacaattggtgcatggatgctgg 576
Query: 165 ctatgaacgtcaaccatgag 184
| ||||| || || ||||||
Sbjct: 577 caatgaatgttaatcatgag 596
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 80,405
Number of Sequences: 369679
Number of extensions: 80405
Number of successful extensions: 21428
Number of sequences better than 0.5: 9
Number of HSP's better than 0.5 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21415
Number of HSP's gapped (non-prelim): 13
length of query: 667
length of database: 203,408,664
effective HSP length: 19
effective length of query: 648
effective length of database: 196,384,763
effective search space: 127257326424
effective search space used: 127257326424
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)