BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4574602.2.1
(1248 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DN493384.1|DN493384 Y009A09.3pR Populus infected leaf su... 42 0.050
gb|CK115383.1|CK115383 Y009A09 Populus infected leaf substr... 40 0.20
gb|DN503364.1|DN503364 Y009A09.5pR Populus infected leaf su... 40 0.20
>gb|DN493384.1|DN493384 Y009A09.3pR Populus infected leaf substracted cDNA library Populus
tremula cDNA clone Y009A09 3', mRNA sequence
Length = 847
Score = 42.1 bits (21), Expect = 0.050
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 934 cagtgtccggcgaggttgagaactggggtctgtccgttgccgaag 978
||||| || ||||||||||| || || ||||| ||||||||||||
Sbjct: 729 cagtggcctgcgaggttgagcaccggagtctgaccgttgccgaag 773
>gb|CK115383.1|CK115383 Y009A09 Populus infected leaf substracted cDNA library Populus
tremula cDNA clone Y009A09 5', mRNA sequence
Length = 529
Score = 40.1 bits (20), Expect = 0.20
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 934 cagtgtccggcgaggttgagaactggggtctgtccgttgccgaa 977
||||| || ||||||||||| || || ||||| |||||||||||
Sbjct: 271 cagtggcctgcgaggttgagcaccggagtctgaccgttgccgaa 228
>gb|DN503364.1|DN503364 Y009A09.5pR Populus infected leaf substracted cDNA library Populus
tremula cDNA clone Y009A09 5', mRNA sequence
Length = 758
Score = 40.1 bits (20), Expect = 0.20
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 934 cagtgtccggcgaggttgagaactggggtctgtccgttgccgaa 977
||||| || ||||||||||| || || ||||| |||||||||||
Sbjct: 256 cagtggcctgcgaggttgagcaccggagtctgaccgttgccgaa 213
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 117,696
Number of Sequences: 369679
Number of extensions: 117696
Number of successful extensions: 26661
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26658
Number of HSP's gapped (non-prelim): 3
length of query: 1248
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1229
effective length of database: 196,384,763
effective search space: 241356873727
effective search space used: 241356873727
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)