BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4573929.2.1
(691 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV244248.1|CV244248 WS0254.B21_C07 PT-MB-N-A-15 Populus ... 56 2e-006
gb|BP930850.1|BP930850 BP930850 full-length enriched poplar... 56 2e-006
gb|CK096710.1|CK096710 UB23CPH06.3pR Populus active cambium... 52 3e-005
gb|CV225974.1|CV225974 WS0162.B21_O17 PT-DX-A-7 Populus tri... 52 3e-005
gb|CV226133.1|CV226133 WS0163.B21_G06 PT-DX-A-7 Populus tri... 52 3e-005
gb|CV232955.1|CV232955 WS0199.B21_D04 PT-DX-N-A-10 Populus ... 52 3e-005
gb|CV235452.1|CV235452 WS0122.B21_D08 PT-GT-FL-A-3 Populus ... 52 3e-005
gb|CV241642.1|CV241642 WS02512.B21_N02 PT-MB-N-A-15 Populus... 52 3e-005
gb|CV272259.1|CV272259 WS0157.B21_C03 PTxN-IB-A-6 Populus t... 52 3e-005
gb|DT491082.1|DT491082 WS02546.C21.1_M06 PT-MB-N-A-15 Popul... 52 3e-005
gb|DT508237.1|DT508237 WS02420.BR_G22 PTxD-ICC-N-A-14 Popul... 52 3e-005
gb|DT512247.1|DT512247 WS02418.B21_M05 PTxD-ICC-N-A-14 Popu... 52 3e-005
gb|DT512853.1|DT512853 WS02420.B21_G22 PTxD-ICC-N-A-14 Popu... 52 3e-005
gb|DT517135.1|DT517135 WS02433.B21_G17 PTxD-ICC-N-A-14 Popu... 52 3e-005
gb|DT517537.1|DT517537 WS02434.B21_J11 PTxD-ICC-N-A-14 Popu... 52 3e-005
gb|CV268555.1|CV268555 WS0205.B21_M24 PTxN-IB-N-A-11 Populu... 50 1e-004
gb|CK092883.1|CK092883 G098P81.3pR Populus tension wood cDN... 48 4e-004
gb|CK106529.1|CK106529 UB23CPH06.5pR Populus active cambium... 48 4e-004
gb|BI126652.1|BI126652 I078P42P Populus leaf cDNA library P... 44 0.007
gb|BU821493.1|BU821493 UB23CPH06 Populus tremula cambium cD... 44 0.007
gb|CV269798.1|CV269798 WS0209.B21_E11 PTxN-IB-N-A-11 Populu... 44 0.007
gb|BU882175.1|BU882175 UM73TF03 Populus flower cDNA library... 42 0.028
gb|CN520824.1|CN520824 GQ0108.B3_C02 GQ010 Populus trichoca... 42 0.028
gb|CV259376.1|CV259376 WS02011.B21_D04 PTxN-IB-N-A-11 Popul... 42 0.028
gb|DT511066.1|DT511066 WS02429.BR_H10 PTxD-ICC-N-A-14 Popul... 42 0.028
gb|DT515569.1|DT515569 WS02427.B21_O20 PTxD-ICC-N-A-14 Popu... 42 0.028
gb|DT515766.1|DT515766 WS02429.B21.1_H10 PTxD-ICC-N-A-14 Po... 42 0.028
gb|CV245200.1|CV245200 WS0256.B21_M02 PT-MB-N-A-15 Populus ... 40 0.11
gb|DN492094.1|DN492094 V046C01.3pR Populus male catkins cDN... 40 0.11
gb|DT492486.1|DT492486 WS02550.C21_N20 PT-MB-N-A-15 Populus... 40 0.11
gb|CV226366.1|CV226366 WS0164.B21_A24 PT-DX-A-7 Populus tri... 38 0.43
gb|CV228902.1|CV228902 WS01911.B21_J11 PT-DX-N-A-10 Populus... 38 0.43
gb|CV231159.1|CV231159 WS0193.B21_L09 PT-DX-N-A-10 Populus ... 38 0.43
gb|CV231777.1|CV231777 WS0195.B21_I15 PT-DX-N-A-10 Populus ... 38 0.43
gb|CV251449.1|CV251449 WS0117.B21_A21 PT-P-FL-A-2 Populus t... 38 0.43
gb|CV264513.1|CV264513 WS02024.B21_L16 PTxN-IB-N-A-11 Popul... 38 0.43
gb|CX178094.1|CX178094 H02_45-74_16.ab1 leaf inoculated wit... 38 0.43
gb|CX184699.1|CX184699 D08_45-77_08.ab1 leaf inoculated wit... 38 0.43
gb|DT505258.1|DT505258 WS01810.C21_H02 PTxD-IL-N-A-9 Populu... 38 0.43
gb|DT518289.1|DT518289 WS02436.B21_L17 PTxD-ICC-N-A-14 Popu... 38 0.43
gb|DT518705.1|DT518705 WS02438.B21_P19 PTxD-ICC-N-A-14 Popu... 38 0.43
>gb|CV244248.1|CV244248 WS0254.B21_C07 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0254_C07 3', mRNA sequence
Length = 582
Score = 56.0 bits (28), Expect = 2e-006
Identities = 76/92 (82%)
Strand = Plus / Minus
Query: 94 ataggctgtgaagtgtacaacttggggactggaaaggggacgtccgtgttggaaatggtg 153
||||| |||||||||||||||||||| || ||||| || || ||||| |||| |||||
Sbjct: 460 ataggttgtgaagtgtacaacttgggaacaggaaaaggtacatccgttctggagatggtt 401
Query: 154 gctgcattcgagaaggcttctgggaagaaaat 185
|| ||||| || ||||| ||| | ||||||||
Sbjct: 400 gcggcatttgaaaaggcatctagaaagaaaat 369
>gb|BP930850.1|BP930850 BP930850 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-015_L21.r 3', mRNA sequence
Length = 574
Score = 56.0 bits (28), Expect = 2e-006
Identities = 76/92 (82%)
Strand = Plus / Minus
Query: 94 ataggctgtgaagtgtacaacttggggactggaaaggggacgtccgtgttggaaatggtg 153
||||| |||||||||||||||||||| || ||||| || || ||||| |||| |||||
Sbjct: 472 ataggttgtgaagtgtacaacttgggaacaggaaaaggtacatccgttctggagatggtt 413
Query: 154 gctgcattcgagaaggcttctgggaagaaaat 185
|| ||||| || ||||| ||| | ||||||||
Sbjct: 412 gcggcatttgaaaaggcatctagaaagaaaat 381
>gb|CK096710.1|CK096710 UB23CPH06.3pR Populus active cambium cDNA library Populus tremula
cDNA clone UB23CPH06 3', mRNA sequence
Length = 875
Score = 52.0 bits (26), Expect = 3e-005
Identities = 80/98 (81%)
Strand = Plus / Minus
Query: 94 ataggctgtgaagtgtacaacttggggactggaaaggggacgtccgtgttggaaatggtg 153
||||| |||||||||||||||||||| || || || || || || || |||| |||||
Sbjct: 510 ataggttgtgaagtgtacaacttgggaacagggaaaggtacatcagttctggagatggtt 451
Query: 154 gctgcattcgagaaggcttctgggaagaaaatccctct 191
|| ||||| || ||||| ||||| |||||||| |||||
Sbjct: 450 gcagcatttgaaaaggcatctggaaagaaaattcctct 413
Score = 42.1 bits (21), Expect = 0.028
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 292 gagatgtgcagagatctgtggaactgggcgagcaagaaccc 332
|||||||| || |||| ||||||||||| |||||||||||
Sbjct: 312 gagatgtgtagggatcaatggaactgggccagcaagaaccc 272
>gb|CV225974.1|CV225974 WS0162.B21_O17 PT-DX-A-7 Populus trichocarpa cDNA clone WS0162_O17
3', mRNA sequence
Length = 504
Score = 52.0 bits (26), Expect = 3e-005
Identities = 80/98 (81%)
Strand = Plus / Plus
Query: 94 ataggctgtgaagtgtacaacttggggactggaaaggggacgtccgtgttggaaatggtg 153
||||| |||||||||||||||||||| || || || || || || || |||| |||||
Sbjct: 40 ataggttgtgaagtgtacaacttgggaacagggaaaggtacatcagttctggagatggtc 99
Query: 154 gctgcattcgagaaggcttctgggaagaaaatccctct 191
|| ||||| || ||||| ||||| |||||||| |||||
Sbjct: 100 gcagcatttgaaaaggcatctggaaagaaaattcctct 137
Score = 42.1 bits (21), Expect = 0.028
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 292 gagatgtgcagagatctgtggaactgggcgagcaagaaccc 332
|||||||| || |||| ||||||||||| |||||||||||
Sbjct: 238 gagatgtgtagggatcaatggaactgggccagcaagaaccc 278
>gb|CV226133.1|CV226133 WS0163.B21_G06 PT-DX-A-7 Populus trichocarpa cDNA clone WS0163_G06
3', mRNA sequence
Length = 918
Score = 52.0 bits (26), Expect = 3e-005
Identities = 80/98 (81%)
Strand = Plus / Minus
Query: 94 ataggctgtgaagtgtacaacttggggactggaaaggggacgtccgtgttggaaatggtg 153
||||| |||||||||||||||||||| || || || || || || || |||| |||||
Sbjct: 533 ataggttgtgaagtgtacaacttgggaacagggaaaggtacatcagttctggagatggtc 474
Query: 154 gctgcattcgagaaggcttctgggaagaaaatccctct 191
|| ||||| || ||||| ||||| |||||||| |||||
Sbjct: 473 gcagcatttgaaaaggcatctggaaagaaaattcctct 436
Score = 42.1 bits (21), Expect = 0.028
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 292 gagatgtgcagagatctgtggaactgggcgagcaagaaccc 332
|||||||| || |||| ||||||||||| |||||||||||
Sbjct: 335 gagatgtgtagggatcaatggaactgggccagcaagaaccc 295
>gb|CV232955.1|CV232955 WS0199.B21_D04 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0199_D04 3', mRNA sequence
Length = 542
Score = 52.0 bits (26), Expect = 3e-005
Identities = 80/98 (81%)
Strand = Plus / Plus
Query: 94 ataggctgtgaagtgtacaacttggggactggaaaggggacgtccgtgttggaaatggtg 153
||||| |||||||||||||||||||| || || || || || || || |||| |||||
Sbjct: 89 ataggttgtgaagtgtacaacttgggaacagggaaaggtacatcagttctggagatggtc 148
Query: 154 gctgcattcgagaaggcttctgggaagaaaatccctct 191
|| ||||| || ||||| ||||| |||||||| |||||
Sbjct: 149 gcagcatttgaaaaggcatctggaaagaaaattcctct 186
Score = 38.2 bits (19), Expect = 0.43
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 292 gagatgtgcagagatctgtggaactgggcgagcaagaacccgtacgg 338
|||||||| || |||| ||||| ||||| ||||||||||| |||||
Sbjct: 287 gagatgtgtagggatcaatggaaatgggccagcaagaacccttacgg 333
>gb|CV235452.1|CV235452 WS0122.B21_D08 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0122_D08 3', mRNA sequence
Length = 652
Score = 52.0 bits (26), Expect = 3e-005
Identities = 80/98 (81%)
Strand = Plus / Minus
Query: 94 ataggctgtgaagtgtacaacttggggactggaaaggggacgtccgtgttggaaatggtg 153
||||| |||||||||||||||||||| || || || || || || || |||| |||||
Sbjct: 578 ataggttgtgaagtgtacaacttgggaacagggaaaggtacatcagttctggagatggtc 519
Query: 154 gctgcattcgagaaggcttctgggaagaaaatccctct 191
|| ||||| || ||||| ||||| |||||||| |||||
Sbjct: 518 gcagcatttgaaaaggcatctggaaagaaaattcctct 481
Score = 42.1 bits (21), Expect = 0.028
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 292 gagatgtgcagagatctgtggaactgggcgagcaagaaccc 332
|||||||| || |||| ||||||||||| |||||||||||
Sbjct: 380 gagatgtgtagggatcaatggaactgggccagcaagaaccc 340
>gb|CV241642.1|CV241642 WS02512.B21_N02 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02512_N02 3', mRNA sequence
Length = 735
Score = 52.0 bits (26), Expect = 3e-005
Identities = 80/98 (81%)
Strand = Plus / Minus
Query: 94 ataggctgtgaagtgtacaacttggggactggaaaggggacgtccgtgttggaaatggtg 153
||||| |||||||||||||||||||| || || || || || || || |||| |||||
Sbjct: 564 ataggttgtgaagtgtacaacttgggaacagggaaaggtacatcagttctggagatggtc 505
Query: 154 gctgcattcgagaaggcttctgggaagaaaatccctct 191
|| ||||| || ||||| ||||| |||||||| |||||
Sbjct: 504 gcagcatttgaaaaggcatctggaaagaaaattcctct 467
Score = 40.1 bits (20), Expect = 0.11
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 292 gagatgtgcagagatctgtggaactgggcgagcaagaacc 331
|||||||| || |||| ||||||||||| ||||||||||
Sbjct: 365 gagatgtgtagggatcaatggaactgggccagcaagaacc 326
>gb|CV272259.1|CV272259 WS0157.B21_C03 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0157_C03 3', mRNA sequence
Length = 696
Score = 52.0 bits (26), Expect = 3e-005
Identities = 80/98 (81%)
Strand = Plus / Minus
Query: 94 ataggctgtgaagtgtacaacttggggactggaaaggggacgtccgtgttggaaatggtg 153
||||| |||||||||||||||||||| || || || || || || || |||| |||||
Sbjct: 533 ataggttgtgaagtgtacaacttgggaacagggaaaggtacatcagttctggagatggtc 474
Query: 154 gctgcattcgagaaggcttctgggaagaaaatccctct 191
|| ||||| || ||||| ||||| |||||||| |||||
Sbjct: 473 gcagcatttgaaaaggcatctggaaagaaaattcctct 436
Score = 42.1 bits (21), Expect = 0.028
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 292 gagatgtgcagagatctgtggaactgggcgagcaagaaccc 332
|||||||| || |||| ||||||||||| |||||||||||
Sbjct: 335 gagatgtgtagggatcaatggaactgggccagcaagaaccc 295
>gb|DT491082.1|DT491082 WS02546.C21.1_M06 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02546_M06 3', mRNA sequence
Length = 922
Score = 52.0 bits (26), Expect = 3e-005
Identities = 80/98 (81%)
Strand = Plus / Minus
Query: 94 ataggctgtgaagtgtacaacttggggactggaaaggggacgtccgtgttggaaatggtg 153
||||| |||||||||||||||||||| || || || || || || || |||| |||||
Sbjct: 566 ataggttgtgaagtgtacaacttgggaacagggaaaggtacatcagttctggagatggtc 507
Query: 154 gctgcattcgagaaggcttctgggaagaaaatccctct 191
|| ||||| || ||||| ||||| |||||||| |||||
Sbjct: 506 gcagcatttgaaaaggcatctggaaagaaaattcctct 469
Score = 42.1 bits (21), Expect = 0.028
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 292 gagatgtgcagagatctgtggaactgggcgagcaagaaccc 332
|||||||| || |||| ||||||||||| |||||||||||
Sbjct: 368 gagatgtgtagggatcaatggaactgggccagcaagaaccc 328
>gb|DT508237.1|DT508237 WS02420.BR_G22 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02420_G22 5', mRNA sequence
Length = 882
Score = 52.0 bits (26), Expect = 3e-005
Identities = 80/98 (81%)
Strand = Plus / Plus
Query: 94 ataggctgtgaagtgtacaacttggggactggaaaggggacgtccgtgttggaaatggtg 153
||||| |||||||||||||||||||| || || || || || || || |||| |||||
Sbjct: 478 ataggttgtgaagtgtacaacttgggaacagggaaaggtacatcagttctggagatggtc 537
Query: 154 gctgcattcgagaaggcttctgggaagaaaatccctct 191
|| ||||| || ||||| ||||| |||||||| |||||
Sbjct: 538 gcagcatttgaaaaggcatctggaaagaaaattcctct 575
Score = 42.1 bits (21), Expect = 0.028
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 292 gagatgtgcagagatctgtggaactgggcgagcaagaaccc 332
|||||||| || |||| ||||||||||| |||||||||||
Sbjct: 676 gagatgtgtagggatcaatggaactgggccagcaagaaccc 716
>gb|DT512247.1|DT512247 WS02418.B21_M05 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02418_M05 3', mRNA sequence
Length = 914
Score = 52.0 bits (26), Expect = 3e-005
Identities = 80/98 (81%)
Strand = Plus / Minus
Query: 94 ataggctgtgaagtgtacaacttggggactggaaaggggacgtccgtgttggaaatggtg 153
||||| |||||||||||||||||||| || || || || || || || |||| |||||
Sbjct: 524 ataggttgtgaagtgtacaacttgggaacagggaaaggtacatcagttctggagatggtc 465
Query: 154 gctgcattcgagaaggcttctgggaagaaaatccctct 191
|| ||||| || ||||| ||||| |||||||| |||||
Sbjct: 464 gcagcatttgaaaaggcatctggaaagaaaattcctct 427
Score = 42.1 bits (21), Expect = 0.028
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 292 gagatgtgcagagatctgtggaactgggcgagcaagaaccc 332
|||||||| || |||| ||||||||||| |||||||||||
Sbjct: 326 gagatgtgtagggatcaatggaactgggccagcaagaaccc 286
>gb|DT512853.1|DT512853 WS02420.B21_G22 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02420_G22 3', mRNA sequence
Length = 922
Score = 52.0 bits (26), Expect = 3e-005
Identities = 80/98 (81%)
Strand = Plus / Minus
Query: 94 ataggctgtgaagtgtacaacttggggactggaaaggggacgtccgtgttggaaatggtg 153
||||| |||||||||||||||||||| || || || || || || || |||| |||||
Sbjct: 494 ataggttgtgaagtgtacaacttgggaacagggaaaggtacatcagttctggagatggtc 435
Query: 154 gctgcattcgagaaggcttctgggaagaaaatccctct 191
|| ||||| || ||||| ||||| |||||||| |||||
Sbjct: 434 gcagcatttgaaaaggcatctggaaagaaaattcctct 397
Score = 42.1 bits (21), Expect = 0.028
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 292 gagatgtgcagagatctgtggaactgggcgagcaagaaccc 332
|||||||| || |||| ||||||||||| |||||||||||
Sbjct: 296 gagatgtgtagggatcaatggaactgggccagcaagaaccc 256
>gb|DT517135.1|DT517135 WS02433.B21_G17 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02433_G17 3', mRNA sequence
Length = 881
Score = 52.0 bits (26), Expect = 3e-005
Identities = 80/98 (81%)
Strand = Plus / Minus
Query: 94 ataggctgtgaagtgtacaacttggggactggaaaggggacgtccgtgttggaaatggtg 153
||||| |||||||||||||||||||| || || || || || || || |||| |||||
Sbjct: 521 ataggttgtgaagtgtacaacttgggaacagggaaaggtacatcagttctggagatggtc 462
Query: 154 gctgcattcgagaaggcttctgggaagaaaatccctct 191
|| ||||| || ||||| ||||| |||||||| |||||
Sbjct: 461 gcagcatttgaaaaggcatctggaaagaaaattcctct 424
Score = 42.1 bits (21), Expect = 0.028
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 292 gagatgtgcagagatctgtggaactgggcgagcaagaaccc 332
|||||||| || |||| ||||||||||| |||||||||||
Sbjct: 323 gagatgtgtagggatcaatggaactgggccagcaagaaccc 283
>gb|DT517537.1|DT517537 WS02434.B21_J11 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02434_J11 3', mRNA sequence
Length = 794
Score = 52.0 bits (26), Expect = 3e-005
Identities = 80/98 (81%)
Strand = Plus / Minus
Query: 94 ataggctgtgaagtgtacaacttggggactggaaaggggacgtccgtgttggaaatggtg 153
||||| |||||||||||||||||||| || || || || || || || |||| |||||
Sbjct: 506 ataggttgtgaagtgtacaacttgggaacagggaaaggtacatcagttctggagatggtc 447
Query: 154 gctgcattcgagaaggcttctgggaagaaaatccctct 191
|| ||||| || ||||| ||||| |||||||| |||||
Sbjct: 446 gcagcatttgaaaaggcatctggaaagaaaattcctct 409
Score = 42.1 bits (21), Expect = 0.028
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 292 gagatgtgcagagatctgtggaactgggcgagcaagaaccc 332
|||||||| || |||| ||||||||||| |||||||||||
Sbjct: 308 gagatgtgtagggatcaatggaactgggccagcaagaaccc 268
>gb|CV268555.1|CV268555 WS0205.B21_M24 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0205_M24 3', mRNA sequence
Length = 458
Score = 50.1 bits (25), Expect = 1e-004
Identities = 70/85 (82%)
Strand = Plus / Minus
Query: 101 gtgaagtgtacaacttggggactggaaaggggacgtccgtgttggaaatggtggctgcat 160
||||||||||||||||||| || ||||| || || ||||| |||| ||||| || ||||
Sbjct: 458 gtgaagtgtacaacttgggaacaggaaaaggtacatccgttctggagatggttgcggcat 399
Query: 161 tcgagaaggcttctgggaagaaaat 185
| || ||||| ||| | ||||||||
Sbjct: 398 ttgaaaaggcatctagaaagaaaat 374
>gb|CK092883.1|CK092883 G098P81.3pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G098P81 3', mRNA sequence
Length = 745
Score = 48.1 bits (24), Expect = 4e-004
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 145 gaaatggtggctgcattcgagaaggcttctgggaagaaaatccc 188
|||||||| |||||||| || || |||||||| |||||||||||
Sbjct: 532 gaaatggtcgctgcatttgaaaaagcttctggcaagaaaatccc 489
Score = 38.2 bits (19), Expect = 0.43
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 268 tggaaggccaagtacgggatcgaggagatgtgcag 302
|||||||| || ||||| ||||||||||||||||
Sbjct: 409 tggaaggcaaaatacggtgtcgaggagatgtgcag 375
>gb|CK106529.1|CK106529 UB23CPH06.5pR Populus active cambium cDNA library Populus tremula
cDNA clone UB23CPH06 5', mRNA sequence
Length = 464
Score = 48.1 bits (24), Expect = 4e-004
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 94 ataggctgtgaagtgtacaacttgggga 121
||||| ||||||||||||||||||||||
Sbjct: 418 ataggttgtgaagtgtacaacttgggga 445
>gb|BI126652.1|BI126652 I078P42P Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 527
Score = 44.1 bits (22), Expect = 0.007
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 94 ataggctgtgaagtgtacaacttggg 119
||||| ||||||||||||||||||||
Sbjct: 216 ataggttgtgaagtgtacaacttggg 241
Score = 42.1 bits (21), Expect = 0.028
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 292 gagatgtgcagagatctgtggaactgggcgagcaagaaccc 332
|||||||| || |||| ||||||||||| |||||||||||
Sbjct: 414 gagatgtgtagggatcaatggaactgggccagcaagaaccc 454
>gb|BU821493.1|BU821493 UB23CPH06 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 473
Score = 44.1 bits (22), Expect = 0.007
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 94 ataggctgtgaagtgtacaacttggg 119
||||| ||||||||||||||||||||
Sbjct: 422 ataggttgtgaagtgtacaacttggg 447
>gb|CV269798.1|CV269798 WS0209.B21_E11 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0209_E11 3', mRNA sequence
Length = 601
Score = 44.1 bits (22), Expect = 0.007
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 94 ataggctgtgaagtgtacaacttggg 119
||||| ||||||||||||||||||||
Sbjct: 591 ataggttgtgaagtgtacaacttggg 566
Score = 42.1 bits (21), Expect = 0.028
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 292 gagatgtgcagagatctgtggaactgggcgagcaagaaccc 332
|||||||| || |||| ||||||||||| |||||||||||
Sbjct: 307 gagatgtgtagggatcaatggaactgggccagcaagaaccc 267
>gb|BU882175.1|BU882175 UM73TF03 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 571
Score = 42.1 bits (21), Expect = 0.028
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 292 gagatgtgcagagatctgtggaactgggcgagcaagaaccc 332
|||||||| || |||| ||||||||||| |||||||||||
Sbjct: 197 gagatgtgtagggatcaatggaactgggccagcaagaaccc 237
>gb|CN520824.1|CN520824 GQ0108.B3_C02 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0108_C02 5', mRNA sequence
Length = 603
Score = 42.1 bits (21), Expect = 0.028
Identities = 66/81 (81%)
Strand = Plus / Plus
Query: 108 gtacaacttggggactggaaaggggacgtccgtgttggaaatggtggctgcattcgagaa 167
||||||| ||||||||||| || || || ||| | |||||||| ||||||| || ||
Sbjct: 127 gtacaacctggggactggatgtggaacatctgtgcttgaaatggtcactgcatttgaaaa 186
Query: 168 ggcttctgggaagaaaatccc 188
|||||||| |||||||||||
Sbjct: 187 agcttctggcaagaaaatccc 207
Score = 38.2 bits (19), Expect = 0.43
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 268 tggaaggccaagtacgggatcgaggagatgtgcag 302
|||||||| || ||||| ||||||||||||||||
Sbjct: 287 tggaaggcaaaatacggtgtcgaggagatgtgcag 321
>gb|CV259376.1|CV259376 WS02011.B21_D04 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02011_D04 3', mRNA sequence
Length = 762
Score = 42.1 bits (21), Expect = 0.028
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 292 gagatgtgcagagatctgtggaactgggcgagcaagaaccc 332
|||||||| || |||| ||||||||||| |||||||||||
Sbjct: 675 gagatgtgtagggatcaatggaactgggccagcaagaaccc 635
>gb|DT511066.1|DT511066 WS02429.BR_H10 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02429_H10 5', mRNA sequence
Length = 465
Score = 42.1 bits (21), Expect = 0.028
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 292 gagatgtgcagagatctgtggaactgggcgagcaagaaccc 332
|||||||| || |||| ||||||||||| |||||||||||
Sbjct: 139 gagatgtgtagggatcaatggaactgggccagcaagaaccc 179
>gb|DT515569.1|DT515569 WS02427.B21_O20 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02427_O20 3', mRNA sequence
Length = 495
Score = 42.1 bits (21), Expect = 0.028
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 292 gagatgtgcagagatctgtggaactgggcgagcaagaaccc 332
|||||||| || |||| ||||||||||| |||||||||||
Sbjct: 326 gagatgtgtagggatcaatggaactgggccagcaagaaccc 286
>gb|DT515766.1|DT515766 WS02429.B21.1_H10 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02429_H10 3', mRNA sequence
Length = 465
Score = 42.1 bits (21), Expect = 0.028
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 292 gagatgtgcagagatctgtggaactgggcgagcaagaaccc 332
|||||||| || |||| ||||||||||| |||||||||||
Sbjct: 327 gagatgtgtagggatcaatggaactgggccagcaagaaccc 287
>gb|CV245200.1|CV245200 WS0256.B21_M02 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0256_M02 3', mRNA sequence
Length = 613
Score = 40.1 bits (20), Expect = 0.11
Identities = 65/80 (81%)
Strand = Plus / Minus
Query: 109 tacaacttggggactggaaaggggacgtccgtgttggaaatggtggctgcattcgagaag 168
|||||| ||||||||||| || || || ||| | |||||||| ||||||| || ||
Sbjct: 513 tacaacctggggactggatgtggaacatctgtgcttgaaatggtcactgcatttgaaaaa 454
Query: 169 gcttctgggaagaaaatccc 188
|||||||| |||||||||||
Sbjct: 453 gcttctggcaagaaaatccc 434
Score = 38.2 bits (19), Expect = 0.43
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 268 tggaaggccaagtacgggatcgaggagatgtgcag 302
|||||||| || ||||| ||||||||||||||||
Sbjct: 354 tggaaggcaaaatacggtgtcgaggagatgtgcag 320
>gb|DN492094.1|DN492094 V046C01.3pR Populus male catkins cDNA library Populus trichocarpa
cDNA clone V046C01 3', mRNA sequence
Length = 753
Score = 40.1 bits (20), Expect = 0.11
Identities = 65/80 (81%)
Strand = Plus / Minus
Query: 109 tacaacttggggactggaaaggggacgtccgtgttggaaatggtggctgcattcgagaag 168
|||||| ||||||||||| || || || ||| | |||||||| ||||||| || ||
Sbjct: 476 tacaacctggggactggatgtggaacatctgtgcttgaaatggtcactgcatttgaaaaa 417
Query: 169 gcttctgggaagaaaatccc 188
|||||||| |||||||||||
Sbjct: 416 gcttctggcaagaaaatccc 397
Score = 38.2 bits (19), Expect = 0.43
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 268 tggaaggccaagtacgggatcgaggagatgtgcag 302
|||||||| || ||||| ||||||||||||||||
Sbjct: 317 tggaaggcaaaatacggtgtcgaggagatgtgcag 283
>gb|DT492486.1|DT492486 WS02550.C21_N20 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02550_N20 3', mRNA sequence
Length = 807
Score = 40.1 bits (20), Expect = 0.11
Identities = 65/80 (81%)
Strand = Plus / Minus
Query: 109 tacaacttggggactggaaaggggacgtccgtgttggaaatggtggctgcattcgagaag 168
|||||| ||||||||||| || || || ||| | |||||||| ||||||| || ||
Sbjct: 495 tacaacctggggactggatgtggaacatctgtgcttgaaatggtcactgcatttgaaaaa 436
Query: 169 gcttctgggaagaaaatccc 188
|||||||| |||||||||||
Sbjct: 435 gcttctggcaagaaaatccc 416
Score = 38.2 bits (19), Expect = 0.43
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 268 tggaaggccaagtacgggatcgaggagatgtgcag 302
|||||||| || ||||| ||||||||||||||||
Sbjct: 336 tggaaggcaaaatacggtgtcgaggagatgtgcag 302
>gb|CV226366.1|CV226366 WS0164.B21_A24 PT-DX-A-7 Populus trichocarpa cDNA clone WS0164_A24
3', mRNA sequence
Length = 795
Score = 38.2 bits (19), Expect = 0.43
Identities = 40/47 (85%)
Strand = Plus / Minus
Query: 292 gagatgtgcagagatctgtggaactgggcgagcaagaacccgtacgg 338
|||||||| || |||| ||||| ||||| ||||||||||| |||||
Sbjct: 696 gagatgtgtagggatcaatggaaatgggccagcaagaacccttacgg 650
>gb|CV228902.1|CV228902 WS01911.B21_J11 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01911_J11 3', mRNA sequence
Length = 521
Score = 38.2 bits (19), Expect = 0.43
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 268 tggaaggccaagtacgggatcgaggagatgtgcag 302
|||||||| || ||||| ||||||||||||||||
Sbjct: 415 tggaaggcaaaatacggtgtcgaggagatgtgcag 381
>gb|CV231159.1|CV231159 WS0193.B21_L09 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0193_L09 3', mRNA sequence
Length = 579
Score = 38.2 bits (19), Expect = 0.43
Identities = 40/47 (85%)
Strand = Plus / Minus
Query: 292 gagatgtgcagagatctgtggaactgggcgagcaagaacccgtacgg 338
|||||||| || |||| ||||| ||||| ||||||||||| |||||
Sbjct: 386 gagatgtgtagggatcaatggaaatgggccagcaagaacccttacgg 340
>gb|CV231777.1|CV231777 WS0195.B21_I15 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0195_I15 3', mRNA sequence
Length = 579
Score = 38.2 bits (19), Expect = 0.43
Identities = 40/47 (85%)
Strand = Plus / Minus
Query: 292 gagatgtgcagagatctgtggaactgggcgagcaagaacccgtacgg 338
|||||||| || |||| ||||| ||||| ||||||||||| |||||
Sbjct: 386 gagatgtgtagggatcaatggaaatgggccagcaagaacccttacgg 340
>gb|CV251449.1|CV251449 WS0117.B21_A21 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS0117_A21 3', mRNA sequence
Length = 616
Score = 38.2 bits (19), Expect = 0.43
Identities = 64/79 (81%)
Strand = Plus / Minus
Query: 109 tacaacttggggactggaaaggggacgtccgtgttggaaatggtggctgcattcgagaag 168
|||||| ||||||||||| || || || ||| | |||||||| ||||||| || ||
Sbjct: 493 tacaacctggggactggatgtggaacatctgtgcttgaaatggtcactgcatttgaaaaa 434
Query: 169 gcttctgggaagaaaatcc 187
|||||||| ||||||||||
Sbjct: 433 gcttctggcaagaaaatcc 415
Score = 38.2 bits (19), Expect = 0.43
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 268 tggaaggccaagtacgggatcgaggagatgtgcag 302
|||||||| || ||||| ||||||||||||||||
Sbjct: 334 tggaaggcaaaatacggtgtcgaggagatgtgcag 300
>gb|CV264513.1|CV264513 WS02024.B21_L16 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02024_L16 3', mRNA sequence
Length = 668
Score = 38.2 bits (19), Expect = 0.43
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 310 tggaactgggcgagcaagaaccc 332
||||||||||| |||||||||||
Sbjct: 541 tggaactgggccagcaagaaccc 519
>gb|CX178094.1|CX178094 H02_45-74_16.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 495
Score = 38.2 bits (19), Expect = 0.43
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 268 tggaaggccaagtacgggatcgaggagatgtgcag 302
|||||||| || ||||| ||||||||||||||||
Sbjct: 369 tggaaggcaaaatacggtgtcgaggagatgtgcag 335
>gb|CX184699.1|CX184699 D08_45-77_08.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 477
Score = 38.2 bits (19), Expect = 0.43
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 292 gagatgtgcagagatctgtggaactgggcgagcaagaacccgtacgg 338
|||||||| || |||| ||||| ||||| ||||||||||| |||||
Sbjct: 90 gagatgtgtagggatcaatggaaatgggccagcaagaacccttacgg 136
>gb|DT505258.1|DT505258 WS01810.C21_H02 PTxD-IL-N-A-9 Populus trichocarpa x Populus
deltoides cDNA clone WS01810_H02 3', mRNA sequence
Length = 935
Score = 38.2 bits (19), Expect = 0.43
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 268 tggaaggccaagtacgggatcgaggagatgtgcag 302
|||||||| || ||||| ||||||||||||||||
Sbjct: 366 tggaaggcaaaatacggtgtcgaggagatgtgcag 332
>gb|DT518289.1|DT518289 WS02436.B21_L17 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02436_L17 3', mRNA sequence
Length = 925
Score = 38.2 bits (19), Expect = 0.43
Identities = 64/79 (81%)
Strand = Plus / Minus
Query: 109 tacaacttggggactggaaaggggacgtccgtgttggaaatggtggctgcattcgagaag 168
|||||| ||||||||||| || || || ||| | |||||||| ||||||| || ||
Sbjct: 513 tacaacctggggactggatgtggaacatctgtgcttgaaatggtcactgcatttgaaaaa 454
Query: 169 gcttctgggaagaaaatcc 187
|||||||| ||||||||||
Sbjct: 453 gcttctggcaagaaaatcc 435
Score = 38.2 bits (19), Expect = 0.43
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 268 tggaaggccaagtacgggatcgaggagatgtgcag 302
|||||||| || ||||| ||||||||||||||||
Sbjct: 354 tggaaggcaaaatacggtgtcgaggagatgtgcag 320
>gb|DT518705.1|DT518705 WS02438.B21_P19 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02438_P19 3', mRNA sequence
Length = 875
Score = 38.2 bits (19), Expect = 0.43
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 268 tggaaggccaagtacgggatcgaggagatgtgcag 302
|||||||| || ||||| ||||||||||||||||
Sbjct: 354 tggaaggcaaaatacggtgtcgaggagatgtgcag 320
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 71,913
Number of Sequences: 369679
Number of extensions: 71913
Number of successful extensions: 18735
Number of sequences better than 0.5: 41
Number of HSP's better than 0.5 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18660
Number of HSP's gapped (non-prelim): 74
length of query: 691
length of database: 203,408,664
effective HSP length: 19
effective length of query: 672
effective length of database: 196,384,763
effective search space: 131970560736
effective search space used: 131970560736
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)