BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 4424417.2.1
         (1137 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CV280156.1|CV280156  WS0135.B21_B04 PTxD-IL-FL-A-4 Populu...    48   7e-004
gb|CX656047.1|CX656047  PO02045F08 Poplar SC cDNA library Po...    46   0.003
gb|BU861464.1|BU861464  S002D05 Populus imbibed seed cDNA li...    40   0.18 
gb|CX655038.1|CX655038  PO01004B01 Poplar SC cDNA library Po...    40   0.18 

>gb|CV280156.1|CV280156 WS0135.B21_B04 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
           deltoides cDNA clone WS0135_B04 3', mRNA sequence
          Length = 919

 Score = 48.1 bits (24), Expect = 7e-004
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 475 ggactacgtgaacacggccatggagcgc 502
           ||||||||||||||| ||||||||||||
Sbjct: 268 ggactacgtgaacactgccatggagcgc 241



>gb|CX656047.1|CX656047 PO02045F08 Poplar SC cDNA library Populus alba x Populus tremula
           var. glandulosa cDNA clone PO02045F08 5', mRNA sequence
          Length = 317

 Score = 46.1 bits (23), Expect = 0.003
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 518 gtcaggtaccgcttcgtcatcgacatcggcaacac 552
           ||||| ||||| || ||||||||||||||||||||
Sbjct: 87  gtcagataccgatttgtcatcgacatcggcaacac 121



>gb|BU861464.1|BU861464 S002D05 Populus imbibed seed cDNA library Populus tremula cDNA 5
           prime, mRNA sequence
          Length = 531

 Score = 40.1 bits (20), Expect = 0.18
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 482 gtgaacacggccatggagcg 501
           ||||||||||||||||||||
Sbjct: 335 gtgaacacggccatggagcg 354



>gb|CX655038.1|CX655038 PO01004B01 Poplar SC cDNA library Populus alba x Populus tremula
           var. glandulosa cDNA clone PO01004B01 5', mRNA sequence
          Length = 692

 Score = 40.1 bits (20), Expect = 0.18
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 482 gtgaacacggccatggagcg 501
           ||||||||||||||||||||
Sbjct: 632 gtgaacacggccatggagcg 651



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 115,765
Number of Sequences: 369679
Number of extensions: 115765
Number of successful extensions: 31037
Number of sequences better than  0.5: 4
Number of HSP's better than  0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31029
Number of HSP's gapped (non-prelim): 8
length of query: 1137
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1118
effective length of database: 196,384,763
effective search space: 219558165034
effective search space used: 219558165034
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)