BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3922840.2.1
(683 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI129761.1|BI129761 G095P13Y Populus cambium cDNA librar... 54 7e-006
gb|BI129810.1|BI129810 G095P84Y Populus cambium cDNA librar... 54 7e-006
gb|DT478427.1|DT478427 WS02522.BR_M01 PT-MB-N-A-15 Populus ... 54 7e-006
gb|DT483495.1|DT483495 WS02522.B21_M01 PT-MB-N-A-15 Populus... 54 7e-006
gb|BU833274.1|BU833274 T044E05 Populus apical shoot cDNA li... 38 0.43
gb|CK091603.1|CK091603 F111P52.3pR Populus flower cDNA libr... 38 0.43
gb|CK103998.1|CK103998 I009P71.5pR Populus senescing leaves... 38 0.43
gb|CV245455.1|CV245455 WS0257.B21_H13 PT-MB-N-A-15 Populus ... 38 0.43
gb|DT513653.1|DT513653 WS02422.B21_K04 PTxD-ICC-N-A-14 Popu... 38 0.43
gb|DT521184.1|DT521184 WS02033.B21_J21 PTxN-IB-N-A-11 Popul... 38 0.43
>gb|BI129761.1|BI129761 G095P13Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 451
Score = 54.0 bits (27), Expect = 7e-006
Identities = 72/87 (82%)
Strand = Plus / Minus
Query: 283 gggcacttgtgctggccgtcgtgggtcttcatgttggcgtagcaggggcagacgtcctcg 342
||||||||||||||||| | ||| || |||||||| | |||||||| || ||||| | |
Sbjct: 286 gggcacttgtgctggccatggtgagttgtcatgttgccatagcagggacacacgtcatag 227
Query: 343 ttgccggaggtgcccggcgggacgcag 369
||||| || |||||||| || ||||||
Sbjct: 226 ttgccagaagtgcccggaggaacgcag 200
>gb|BI129810.1|BI129810 G095P84Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 343
Score = 54.0 bits (27), Expect = 7e-006
Identities = 72/87 (82%)
Strand = Plus / Minus
Query: 283 gggcacttgtgctggccgtcgtgggtcttcatgttggcgtagcaggggcagacgtcctcg 342
||||||||||||||||| | ||| || |||||||| | |||||||| || ||||| | |
Sbjct: 285 gggcacttgtgctggccatggtgagttgtcatgttgccatagcagggacacacgtcatag 226
Query: 343 ttgccggaggtgcccggcgggacgcag 369
||||| || |||||||| || ||||||
Sbjct: 225 ttgccagaagtgcccggaggaacgcag 199
>gb|DT478427.1|DT478427 WS02522.BR_M01 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02522_M01 5', mRNA sequence
Length = 741
Score = 54.0 bits (27), Expect = 7e-006
Identities = 72/87 (82%)
Strand = Plus / Minus
Query: 283 gggcacttgtgctggccgtcgtgggtcttcatgttggcgtagcaggggcagacgtcctcg 342
||||||||||||||||| | ||| || |||||||| | |||||||| || ||||| | |
Sbjct: 411 gggcacttgtgctggccatggtgagttgtcatgttgccatagcagggacacacgtcatag 352
Query: 343 ttgccggaggtgcccggcgggacgcag 369
||||| || |||||||| || ||||||
Sbjct: 351 ttgccagaagtgcccggaggaacgcag 325
>gb|DT483495.1|DT483495 WS02522.B21_M01 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02522_M01 3', mRNA sequence
Length = 741
Score = 54.0 bits (27), Expect = 7e-006
Identities = 72/87 (82%)
Strand = Plus / Plus
Query: 283 gggcacttgtgctggccgtcgtgggtcttcatgttggcgtagcaggggcagacgtcctcg 342
||||||||||||||||| | ||| || |||||||| | |||||||| || ||||| | |
Sbjct: 331 gggcacttgtgctggccatggtgagttgtcatgttgccatagcagggacacacgtcatag 390
Query: 343 ttgccggaggtgcccggcgggacgcag 369
||||| || |||||||| || ||||||
Sbjct: 391 ttgccagaagtgcccggaggaacgcag 417
>gb|BU833274.1|BU833274 T044E05 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 221
Score = 38.2 bits (19), Expect = 0.43
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 88 gccagccaaacatcacatatata 110
||||||||||||||| |||||||
Sbjct: 86 gccagccaaacatcaaatatata 64
>gb|CK091603.1|CK091603 F111P52.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F111P52 3', mRNA sequence
Length = 680
Score = 38.2 bits (19), Expect = 0.43
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 88 gccagccaaacatcacatatata 110
||||||||||||||| |||||||
Sbjct: 29 gccagccaaacatcagatatata 51
>gb|CK103998.1|CK103998 I009P71.5pR Populus senescing leaves cDNA library Populus tremula
cDNA clone I009P71 5', mRNA sequence
Length = 283
Score = 38.2 bits (19), Expect = 0.43
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 54 tgtcactaactcactattg 72
|||||||||||||||||||
Sbjct: 249 tgtcactaactcactattg 267
>gb|CV245455.1|CV245455 WS0257.B21_H13 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0257_H13 3', mRNA sequence
Length = 937
Score = 38.2 bits (19), Expect = 0.43
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 102 acatatatactattatataatat 124
|||||||||||||| ||||||||
Sbjct: 202 acatatatactattgtataatat 180
>gb|DT513653.1|DT513653 WS02422.B21_K04 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02422_K04 3', mRNA sequence
Length = 860
Score = 38.2 bits (19), Expect = 0.43
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 102 acatatatactattatataatat 124
|||||||||||||| ||||||||
Sbjct: 217 acatatatactattgtataatat 195
>gb|DT521184.1|DT521184 WS02033.B21_J21 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02033_J21 3', mRNA sequence
Length = 847
Score = 38.2 bits (19), Expect = 0.43
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 102 acatatatactattatataatat 124
|||||||||||||| ||||||||
Sbjct: 234 acatatatactattgtataatat 212
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 63,412
Number of Sequences: 369679
Number of extensions: 63412
Number of successful extensions: 17279
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17269
Number of HSP's gapped (non-prelim): 10
length of query: 683
length of database: 203,408,664
effective HSP length: 19
effective length of query: 664
effective length of database: 196,384,763
effective search space: 130399482632
effective search space used: 130399482632
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)