BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3871878.2.1
(950 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI130663.1|BI130663 G108P95Y Populus cambium cDNA librar... 182 2e-044
gb|CK116642.1|CK116642 B015P14 Hybrid aspen plasmid library... 149 2e-034
gb|CN550551.1|CN550551 GQ0242.B3_J13 GQ024 Populus trichoca... 119 2e-025
gb|CA928550.1|CA928550 MTU6TR.P4.A02 Aspen root cDNA Librar... 117 8e-025
gb|CV237262.1|CV237262 WS01227.B21.1_C10 PT-GT-FL-A-3 Popul... 117 8e-025
gb|DT489199.1|DT489199 WS02538.B21_J01 PT-MB-N-A-15 Populus... 117 8e-025
gb|CV247264.1|CV247264 WS01117.B21_J07 PT-P-FL-A-2 Populus ... 113 1e-023
gb|DT476310.1|DT476310 WS01229.B21_B21 PT-GT-FL-A-3 Populus... 113 1e-023
gb|DT487290.1|DT487290 WS02533.B21_E19 PT-MB-N-A-15 Populus... 113 1e-023
gb|BI127683.1|BI127683 G064P33Y Populus cambium cDNA librar... 111 5e-023
gb|CK098211.1|CK098211 A007P62.5pR Hybrid aspen plasmid lib... 109 2e-022
gb|BU825809.1|BU825809 UK113TD01 Populus apical shoot cDNA ... 107 8e-022
gb|BI135440.1|BI135440 F051P45Y Populus flower cDNA library... 103 1e-020
gb|BI127468.1|BI127468 G061P13Y Populus cambium cDNA librar... 100 2e-019
gb|CK102028.1|CK102028 G061P13.5pR Populus tension wood cDN... 100 2e-019
gb|CA928802.1|CA928802 MTU6TR.P7.A07 Aspen root cDNA Librar... 96 3e-018
gb|DT494155.1|DT494155 WS01117.BR_J07 PT-P-FL-A-2 Populus t... 94 1e-017
gb|BI119774.1|BI119774 F005P05Y Populus flower cDNA library... 90 2e-016
gb|DT473267.1|DT473267 WS01229.BR_B21 PT-GT-FL-A-3 Populus ... 88 7e-016
gb|BI132071.1|BI132071 G130P62Y Populus cambium cDNA librar... 86 3e-015
gb|CX653925.1|CX653925 PO02009F04 Poplar SC cDNA library Po... 86 3e-015
gb|DN493626.1|DN493626 G073P36.5pR Populus tension wood cDN... 78 7e-013
gb|DT523430.1|DT523430 WS02039.B21_K21 PTxN-IB-N-A-11 Popul... 78 7e-013
gb|AI161839.1|AI161839 A007P62U Hybrid aspen plasmid librar... 74 1e-011
gb|DT472669.1|DT472669 WS01227.BR.1_C10 PT-GT-FL-A-3 Populu... 74 1e-011
gb|CK091807.1|CK091807 F127P19.3pR Populus flower cDNA libr... 72 4e-011
gb|CV236293.1|CV236293 WS01223.B21_J13 PT-GT-FL-A-3 Populus... 72 4e-011
gb|DT499631.1|DT499631 WS0118.BR_N17 PT-P-FL-A-2 Populus tr... 72 4e-011
gb|AI164673.1|AI164673 A067P03U Hybrid aspen plasmid librar... 62 4e-008
gb|BI128391.1|BI128391 G075P18Y Populus cambium cDNA librar... 62 4e-008
gb|BI128926.1|BI128926 G083P61Y Populus cambium cDNA librar... 62 4e-008
gb|BI129307.1|BI129307 G088P86Y Populus cambium cDNA librar... 62 4e-008
gb|BI129429.1|BI129429 G090P59Y Populus cambium cDNA librar... 62 4e-008
gb|BI129524.1|BI129524 G091P86Y Populus cambium cDNA librar... 62 4e-008
gb|BI129711.1|BI129711 G094P70Y Populus cambium cDNA librar... 62 4e-008
gb|BI130919.1|BI130919 G112P69Y Populus cambium cDNA librar... 62 4e-008
gb|BI131682.1|BI131682 G124P28Y Populus cambium cDNA librar... 62 4e-008
gb|BU867751.1|BU867751 M103H04 Populus flower cDNA library ... 62 4e-008
gb|BU890966.1|BU890966 P044B01 Populus petioles cDNA librar... 62 4e-008
gb|BU896113.1|BU896113 X035G02 Populus wood cDNA library Po... 62 4e-008
gb|CF227845.1|CF227845 PtaXM0005D5D0507 Poplar cDNA library... 62 4e-008
gb|CF230986.1|CF230986 PtaC0016A10A1002 Poplar cDNA library... 62 4e-008
gb|CF231427.1|CF231427 PtaC0021C8C0806 Poplar cDNA library ... 62 4e-008
gb|CF233086.1|CF233086 PtaJXO0019B7B0703 Poplar cDNA librar... 62 4e-008
gb|CF234119.1|CF234119 PtaJXO2G2G0214 Poplar cDNA library f... 62 4e-008
gb|CF235592.1|CF235592 PtaJXT0024F4F0412 Poplar cDNA librar... 62 4e-008
gb|CF237019.1|CF237019 PtaJXT9H1H0115 Poplar cDNA library f... 62 4e-008
gb|CF237340.1|CF237340 Ptajxtjxt4H6H0616 Poplar cDNA librar... 62 4e-008
gb|CK093218.1|CK093218 G112P18.3pR Populus tension wood cDN... 62 4e-008
gb|CN521035.1|CN521035 GQ0105.B3_B09 GQ010 Populus trichoca... 62 4e-008
gb|CV227544.1|CV227544 WS0167.B21_H19 PT-DX-A-7 Populus tri... 62 4e-008
gb|CV242276.1|CV242276 WS02514.B21.1_J24 PT-MB-N-A-15 Popul... 62 4e-008
gb|CX168197.1|CX168197 B07_69-117_03.ab1 leaf inoculated wi... 62 4e-008
gb|DT472425.1|DT472425 WS01226.BR.1_J07 PT-GT-FL-A-3 Populu... 62 4e-008
gb|DT472504.1|DT472504 WS01226.BR_C07 PT-GT-FL-A-3 Populus ... 62 4e-008
gb|DT473029.1|DT473029 WS01228.BR_F15 PT-GT-FL-A-3 Populus ... 62 4e-008
gb|DT473105.1|DT473105 WS01228.BR_J10 PT-GT-FL-A-3 Populus ... 62 4e-008
gb|DT473360.1|DT473360 WS01229.BR_G21 PT-GT-FL-A-3 Populus ... 62 4e-008
gb|DT473469.1|DT473469 WS01229.BR_L20 PT-GT-FL-A-3 Populus ... 62 4e-008
gb|DT474143.1|DT474143 WS01230.BR_P10 PT-GT-FL-A-3 Populus ... 62 4e-008
gb|DT475801.1|DT475801 WS0128.BR_E01 PT-GT-FL-A-3 Populus t... 62 4e-008
gb|DT478055.1|DT478055 WS02521.BR_L16 PT-MB-N-A-15 Populus ... 62 4e-008
gb|DT481214.1|DT481214 WS02531.BR_D18 PT-MB-N-A-15 Populus ... 62 4e-008
gb|DT483124.1|DT483124 WS02521.B21_L16 PT-MB-N-A-15 Populus... 62 4e-008
gb|DT486526.1|DT486526 WS02531.B21_D18 PT-MB-N-A-15 Populus... 62 4e-008
gb|DT493749.1|DT493749 WS01116.BR_F08 PT-P-FL-A-2 Populus t... 62 4e-008
gb|DT493756.1|DT493756 WS01116.BR_F15 PT-P-FL-A-2 Populus t... 62 4e-008
gb|DT495098.1|DT495098 WS0112.BR_G03 PT-P-FL-A-2 Populus tr... 62 4e-008
gb|DT496508.1|DT496508 WS01123.BR_J21 PT-P-FL-A-2 Populus t... 62 4e-008
gb|DT499407.1|DT499407 WS0118.BR_D14 PT-P-FL-A-2 Populus tr... 62 4e-008
gb|DT500413.1|DT500413 PX0015.BR_G13 PT-X-FL-A-1 Populus tr... 62 4e-008
gb|DT500580.1|DT500580 PX0015.BR_O15 PT-X-FL-A-1 Populus tr... 62 4e-008
gb|DT507862.1|DT507862 WS02419.BR_G18 PTxD-ICC-N-A-14 Popul... 62 4e-008
gb|DT508589.1|DT508589 WS02421.BR_G08 PTxD-ICC-N-A-14 Popul... 62 4e-008
gb|DT511072.1|DT511072 WS02429.BR_H16 PTxD-ICC-N-A-14 Popul... 62 4e-008
gb|DT512490.1|DT512490 WS02419.B21_G18 PTxD-ICC-N-A-14 Popu... 62 4e-008
gb|CB239593.1|CB239593 RSH14B05 two-month-old roots from cl... 60 2e-007
gb|BI129203.1|BI129203 G087P27Y Populus cambium cDNA librar... 58 6e-007
gb|AI162651.1|AI162651 A021P15U Hybrid aspen plasmid librar... 56 3e-006
gb|CN518111.1|CN518111 GQ0092.B3_N23 GQ009 Populus trichoca... 56 3e-006
gb|DT475575.1|DT475575 WS0127.BR_I17 PT-GT-FL-A-3 Populus t... 56 3e-006
gb|BU881368.1|BU881368 UM61TG12 Populus flower cDNA library... 54 1e-005
gb|BU883590.1|BU883590 UM93TF01 Populus flower cDNA library... 54 1e-005
gb|BU884950.1|BU884950 R018E02 Populus root cDNA library Po... 54 1e-005
gb|CA821665.1|CA821665 RSH05H07 two-month-old roots from cl... 54 1e-005
gb|CF231485.1|CF231485 PtaC0022A3A0301 Poplar cDNA library ... 54 1e-005
gb|CN517326.1|CN517326 GQ0091.B3_L03 GQ009 Populus trichoca... 54 1e-005
gb|CN520650.1|CN520650 GQ0108.B3_J18 GQ010 Populus trichoca... 54 1e-005
gb|CN549606.1|CN549606 GQ0242.B3_P07 GQ024 Populus trichoca... 54 1e-005
gb|AJ771546.1|AJ771546 AJ771546 Populus euphratica root 3-6... 54 1e-005
gb|AJ775409.1|AJ775409 AJ775409 Populus euphratica shoot 3-... 54 1e-005
gb|CX169943.1|CX169943 A08_69-19_02.ab1 leaf inoculated wit... 54 1e-005
gb|CX182512.1|CX182512 H09_45-121_15.ab1 leaf inoculated wi... 54 1e-005
gb|DT474122.1|DT474122 WS01230.BR_O03 PT-GT-FL-A-3 Populus ... 54 1e-005
gb|DT476800.1|DT476800 WS01230.B21_O03 PT-GT-FL-A-3 Populus... 54 1e-005
gb|DT477775.1|DT477775 WS02520.BR_P08 PT-MB-N-A-15 Populus ... 54 1e-005
gb|DT487763.1|DT487763 WS02534.B21_J13 PT-MB-N-A-15 Populus... 54 1e-005
gb|CN549824.1|CN549824 GQ0244.B3_B01 GQ024 Populus trichoca... 52 4e-005
gb|AJ771552.1|AJ771552 AJ771552 Populus euphratica root 3-6... 52 4e-005
gb|AJ776417.1|AJ776417 AJ776417 Populus euphratica root 3-6... 52 4e-005
gb|DT492508.1|DT492508 WS02550.C21_O21 PT-MB-N-A-15 Populus... 52 4e-005
gb|BI132121.1|BI132121 G131P49Y Populus cambium cDNA librar... 50 2e-004
gb|CF234128.1|CF234128 PtaJXO2H11H1115 Poplar cDNA library ... 50 2e-004
gb|CK319367.1|CK319367 X9P09h10 Populus stem seasonal libra... 50 2e-004
gb|CV130512.1|CV130512 X9P09a03 Populus stem seasonal libra... 50 2e-004
gb|DT476172.1|DT476172 WS01228.B21_J10 PT-GT-FL-A-3 Populus... 50 2e-004
gb|DT494608.1|DT494608 WS01118.BR.1_O19 PT-P-FL-A-2 Populus... 50 2e-004
gb|DT476820.1|DT476820 WS01230.B21_P10 PT-GT-FL-A-3 Populus... 48 6e-004
gb|BI137576.1|BI137576 F088P66Y Populus flower cDNA library... 46 0.002
gb|BI137782.1|BI137782 F093P42Y Populus flower cDNA library... 46 0.002
gb|BU882230.1|BU882230 UM74TD02 Populus flower cDNA library... 46 0.002
gb|BU880023.1|BU880023 UM40TE04 Populus flower cDNA library... 44 0.010
gb|BU883620.1|BU883620 UM95TA12 Populus flower cDNA library... 44 0.010
gb|CF233436.1|CF233436 PtaJXO0023E8E0810 Poplar cDNA librar... 44 0.010
gb|CK099674.1|CK099674 A080P20.5pR Hybrid aspen plasmid lib... 44 0.010
gb|CV233669.1|CV233669 WS01211.B21_O21 PT-GT-FL-A-3 Populus... 44 0.010
gb|CV247664.1|CV247664 WS01118.B21_O19 PT-P-FL-A-2 Populus ... 44 0.010
gb|CV236976.1|CV236976 WS01226.B21.1_C07 PT-GT-FL-A-3 Popul... 42 0.038
gb|CV264510.1|CV264510 WS02024.B21_L13 PTxN-IB-N-A-11 Popul... 42 0.038
gb|DT476114.1|DT476114 WS01228.B21_F15 PT-GT-FL-A-3 Populus... 42 0.038
gb|DT519855.1|DT519855 WS02443.B21_N22 PTxD-ICC-N-A-14 Popu... 42 0.038
>gb|BI130663.1|BI130663 G108P95Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 455
Score = 182 bits (92), Expect = 2e-044
Identities = 290/356 (81%)
Strand = Plus / Minus
Query: 28 tagtgcctgtgcaacaaaattgctgaccacgcggccatcatcgagacacatacgaggacc 87
||||||||| ||||||||||| || || || ||||||||||| | ||||| ||||| ||
Sbjct: 356 tagtgcctgagcaacaaaattactaacaacacggccatcatctatgcacattcgaggtcc 297
Query: 88 atatgtattgaaaatgcgggcaatacgcacctcaacaccagcaccacgatgatagtccat 147
||| ||||||||||| | |||||| | ||||| ||||||||||| || |||||||||||
Sbjct: 296 ataagtattgaaaattctggcaatcctaacctctacaccagcacctcggtgatagtccat 237
Query: 148 agttgaagtctcggctgttctcttcccctcatcataacagctcctaacaccaataggatt 207
||| | ||||| || |||||||| || ||||| ||||| ||||| ||||| || |||||
Sbjct: 236 agtcaatgtctcagcagttctctttccttcatcgtaacaactcctgacaccgatgggatt 177
Query: 208 aacgtgcccccagtatgactccttctgtggatgctcaagtggatcaccataaacttcact 267
||||| |||||||| | ||| ||| ||||||| || |||||||||||||| || ||
Sbjct: 176 aacgtttccccagtaagtctcgacctgaggatgctgtagaggatcaccataaacctcgct 117
Query: 268 tgtgctagtcaacaaaaaccttgcaccaactcgctttgccagacccaacatattcaaagt 327
|| || || | ||||||||| |||||||||| ||| |||| ||||||||||||||| ||
Sbjct: 116 ggtactggtaagcaaaaacctagcaccaactctcttagccaaacccaacatattcaatgt 57
Query: 328 tcccatgacatttgtcttgatcgtcttgattgggttatacttgtaatgaacgggcg 383
|||| ||| || ||||| || ||||||| || || | |||||||||||| ||||
Sbjct: 56 gcccacgacgttagtctttattgtcttgaccggcttgtgcttgtaatgaacaggcg 1
>gb|CK116642.1|CK116642 B015P14 Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone B015P14 5', mRNA sequence
Length = 443
Score = 149 bits (75), Expect = 2e-034
Identities = 252/311 (81%)
Strand = Plus / Minus
Query: 74 cacatacgaggaccatatgtattgaaaatgcgggcaatacgcacctcaacaccagcacca 133
||||| ||||| ||||| ||||||||||| | |||||| | ||||| |||||||||||
Sbjct: 332 cacattcgaggtccataagtattgaaaattctggcaatcctaacctctacaccagcacct 273
Query: 134 cgatgatagtccatagttgaagtctcggctgttctcttcccctcatcataacagctccta 193
|| |||||||||||||| | ||||| || |||||||| || | ||| ||||| |||||
Sbjct: 272 cggtgatagtccatagtcaatgtctcagcagttctctttccttaatcgtaacaactcctg 213
Query: 194 acaccaataggattaacgtgcccccagtatgactccttctgtggatgctcaagtggatca 253
||||| || |||||||||| |||||||| | ||| ||| ||||||| | ||||||
Sbjct: 212 acaccgatgggattaacgtttccccagtaagtctcgacctgaggatgctgtaaaggatca 153
Query: 254 ccataaacttcacttgtgctagtcaacaaaaaccttgcaccaactcgctttgccagaccc 313
|||||||| || || || || || | ||||||||| |||||||||| ||| |||| ||||
Sbjct: 152 ccataaacctcgctggtactggtaagcaaaaacctagcaccaactctcttagccaaaccc 93
Query: 314 aacatattcaaagttcccatgacatttgtcttgatcgtcttgattgggttatacttgtaa 373
||||||||||| || |||| ||| || ||||| || ||||||| ||||| | |||||||
Sbjct: 92 aacatattcaatgtgcccacgacgttagtctttattgtcttgaccgggttgtgcttgtaa 33
Query: 374 tgaacgggcga 384
||||| |||||
Sbjct: 32 tgaacaggcga 22
>gb|CN550551.1|CN550551 GQ0242.B3_J13 GQ024 Populus trichocarpa x Populus deltoides cDNA
clone GQ0242_J13 5', mRNA sequence
Length = 709
Score = 119 bits (60), Expect = 2e-025
Identities = 219/272 (80%)
Strand = Plus / Minus
Query: 28 tagtgcctgtgcaacaaaattgctgaccacgcggccatcatcgagacacatacgaggacc 87
||||||||| ||||||||||| || || || ||||||||||| | ||||| ||||| ||
Sbjct: 275 tagtgcctgagcaacaaaattactaacaacacggccatcatctatgcacattcgaggtcc 216
Query: 88 atatgtattgaaaatgcgggcaatacgcacctcaacaccagcaccacgatgatagtccat 147
|| ||||||||||| | ||||| | ||||| ||||||||||| || |||||||||||
Sbjct: 215 gtaagtattgaaaattctagcaatcctaacctctacaccagcacctcggtgatagtccat 156
Query: 148 agttgaagtctcggctgttctcttcccctcatcataacagctcctaacaccaataggatt 207
||| | ||||| || |||||||| || ||||| ||||| ||||| ||||| || |||||
Sbjct: 155 agtcaatgtctcagcagttctctttccttcatcgtaacaactcctgacaccgatgggatt 96
Query: 208 aacgtgcccccagtatgactccttctgtggatgctcaagtggatcaccataaacttcact 267
||||| |||||||| | ||| ||| ||||||| | |||||||||||||| || ||
Sbjct: 95 aacgttgccccagtaagtctcgacctgaggatgctgtaaaggatcaccataaacctcgct 36
Query: 268 tgtgctagtcaacaaaaaccttgcaccaactc 299
|| || || | ||||||||| ||||||||||
Sbjct: 35 ggtactggtaagcaaaaacctagcaccaactc 4
>gb|CA928550.1|CA928550 MTU6TR.P4.A02 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 599
Score = 117 bits (59), Expect = 8e-025
Identities = 161/195 (82%)
Strand = Plus / Minus
Query: 28 tagtgcctgtgcaacaaaattgctgaccacgcggccatcatcgagacacatacgaggacc 87
||||||||| ||||||||||| || || || ||||||||||| | ||||| ||||| ||
Sbjct: 240 tagtgcctgagcaacaaaattactaacaacacggccatcatctatgcacattcgaggtcc 181
Query: 88 atatgtattgaaaatgcgggcaatacgcacctcaacaccagcaccacgatgatagtccat 147
||| ||||||||||| | |||||| | ||||| ||||||||||| || |||||||||||
Sbjct: 180 ataagtattgaaaattctggcaatcctaacctctacaccagcacctcggtgatagtccat 121
Query: 148 agttgaagtctcggctgttctcttcccctcatcataacagctcctaacaccaataggatt 207
||| | ||||| || |||||||| || ||||| ||||| ||||| ||||| || |||||
Sbjct: 120 agtcaatgtctcagcagttctctttccttcatcgtaacaactcctgacaccgatgggatt 61
Query: 208 aacgtgcccccagta 222
|||| ||||||||
Sbjct: 60 gacgtttccccagta 46
>gb|CV237262.1|CV237262 WS01227.B21.1_C10 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01227_C10 3', mRNA sequence
Length = 895
Score = 117 bits (59), Expect = 8e-025
Identities = 161/195 (82%)
Strand = Plus / Plus
Query: 28 tagtgcctgtgcaacaaaattgctgaccacgcggccatcatcgagacacatacgaggacc 87
||||||||| ||||||||||| || || || ||||||||||| | ||||| ||||| ||
Sbjct: 653 tagtgcctgagcaacaaaattactaacaacacggccatcatctatgcacattcgaggtcc 712
Query: 88 atatgtattgaaaatgcgggcaatacgcacctcaacaccagcaccacgatgatagtccat 147
||| ||||||||||| | ||||| | ||||| ||||||||||| || |||||||||||
Sbjct: 713 ataagtattgaaaattctagcaatcctaacctctacaccagcacctcggtgatagtccat 772
Query: 148 agttgaagtctcggctgttctcttcccctcatcataacagctcctaacaccaataggatt 207
||| | ||||| || |||||||| || ||||| ||||| ||||| ||||| || |||||
Sbjct: 773 agtcaatgtctcagcagttctctttccttcatcgtaacaactcctgacaccgatgggatt 832
Query: 208 aacgtgcccccagta 222
||||| ||||||||
Sbjct: 833 aacgttgccccagta 847
>gb|DT489199.1|DT489199 WS02538.B21_J01 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02538_J01 3', mRNA sequence
Length = 875
Score = 117 bits (59), Expect = 8e-025
Identities = 161/195 (82%)
Strand = Plus / Plus
Query: 28 tagtgcctgtgcaacaaaattgctgaccacgcggccatcatcgagacacatacgaggacc 87
||||||||| ||||||||||| || || || ||||||||||| | ||||| ||||| ||
Sbjct: 655 tagtgcctgagcaacaaaattactaacaacacggccatcatctatgcacattcgaggtcc 714
Query: 88 atatgtattgaaaatgcgggcaatacgcacctcaacaccagcaccacgatgatagtccat 147
||| ||||||||||| | ||||| | ||||| ||||||||||| || |||||||||||
Sbjct: 715 ataagtattgaaaattctagcaatcctaacctctacaccagcacctcggtgatagtccat 774
Query: 148 agttgaagtctcggctgttctcttcccctcatcataacagctcctaacaccaataggatt 207
||| | ||||| || |||||||| || ||||| ||||| ||||| ||||| || |||||
Sbjct: 775 agtcaatgtctcagcagttctctttccttcatcgtaacaactcctgacaccgatgggatt 834
Query: 208 aacgtgcccccagta 222
||||| ||||||||
Sbjct: 835 aacgttgccccagta 849
>gb|CV247264.1|CV247264 WS01117.B21_J07 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01117_J07 3', mRNA sequence
Length = 902
Score = 113 bits (57), Expect = 1e-023
Identities = 153/185 (82%)
Strand = Plus / Plus
Query: 28 tagtgcctgtgcaacaaaattgctgaccacgcggccatcatcgagacacatacgaggacc 87
||||||||| ||||||||||| || || || ||||||||||| | ||||| ||||| ||
Sbjct: 716 tagtgcctgagcaacaaaattactaacaacacggccatcatctatgcacattcgaggtcc 775
Query: 88 atatgtattgaaaatgcgggcaatacgcacctcaacaccagcaccacgatgatagtccat 147
||| ||||||||||| | ||||| | ||||| ||||||||||| || |||||||||||
Sbjct: 776 ataagtattgaaaattctagcaatcctaacctctacaccagcacctcggtgatagtccat 835
Query: 148 agttgaagtctcggctgttctcttcccctcatcataacagctcctaacaccaataggatt 207
||| | ||||| || |||||||| || ||||| ||||| ||||| ||||| || |||||
Sbjct: 836 agtcaatgtctcagcagttctctttccttcatcgtaacaactcctgacaccgatgggatt 895
Query: 208 aacgt 212
|||||
Sbjct: 896 aacgt 900
>gb|DT476310.1|DT476310 WS01229.B21_B21 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01229_B21 3', mRNA sequence
Length = 922
Score = 113 bits (57), Expect = 1e-023
Identities = 189/233 (81%)
Strand = Plus / Plus
Query: 29 agtgcctgtgcaacaaaattgctgaccacgcggccatcatcgagacacatacgaggacca 88
|||||||| ||||||||||| || || || ||||||||||| | ||||| || || |||
Sbjct: 651 agtgcctgagcaacaaaattactaacaacacggccatcatcaatgcacatccggggtcca 710
Query: 89 tatgtattgaaaatgcgggcaatacgcacctcaacaccagcaccacgatgatagtccata 148
|| |||||||| || | ||||| | ||||||||||| |||||||| ||||||||||||
Sbjct: 711 taagtattgaagattctagcaatcctgacctcaacaccggcaccacggtgatagtccata 770
Query: 149 gttgaagtctcggctgttctcttcccctcatcataacagctcctaacaccaataggatta 208
| | ||||| ||||||||||| || ||||| ||||| ||||| ||||| || ||||||
Sbjct: 771 gccaatgtctctgctgttctctttccttcatcgtaacaactcctgacaccgatgggatta 830
Query: 209 acgtgcccccagtatgactccttctgtggatgctcaagtggatcaccataaac 261
|||| |||||||| | ||| ||| ||||||| || ||||||||||||||
Sbjct: 831 acgttgccccagtaagtctcgacctgaggatgctgtagaggatcaccataaac 883
>gb|DT487290.1|DT487290 WS02533.B21_E19 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02533_E19 3', mRNA sequence
Length = 912
Score = 113 bits (57), Expect = 1e-023
Identities = 189/233 (81%)
Strand = Plus / Plus
Query: 29 agtgcctgtgcaacaaaattgctgaccacgcggccatcatcgagacacatacgaggacca 88
|||||||| ||||||||||| || || || ||||||||||| | ||||| || || |||
Sbjct: 667 agtgcctgagcaacaaaattactaacaacacggccatcatcaatgcacatccggggtcca 726
Query: 89 tatgtattgaaaatgcgggcaatacgcacctcaacaccagcaccacgatgatagtccata 148
|| |||||||| || | ||||| | ||||||||||| |||||||| ||||||||||||
Sbjct: 727 taagtattgaagattctagcaatcctgacctcaacaccggcaccacggtgatagtccata 786
Query: 149 gttgaagtctcggctgttctcttcccctcatcataacagctcctaacaccaataggatta 208
| | ||||| ||||||||||| || ||||| ||||| ||||| ||||| || ||||||
Sbjct: 787 gccaatgtctctgctgttctctttccttcatcgtaacaactcctgacaccgatgggatta 846
Query: 209 acgtgcccccagtatgactccttctgtggatgctcaagtggatcaccataaac 261
|||| |||||||| | ||| ||| ||||||| || ||||||||||||||
Sbjct: 847 acgttgccccagtaagtctcgacctgaggatgctgtagaggatcaccataaac 899
>gb|BI127683.1|BI127683 G064P33Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 363
Score = 111 bits (56), Expect = 5e-023
Identities = 209/260 (80%)
Strand = Plus / Minus
Query: 155 gtctcggctgttctcttcccctcatcataacagctcctaacaccaataggattaacgtgc 214
||||| || |||||||| || ||||| ||||| ||||| ||||| || ||||||||||
Sbjct: 360 gtctcagcagttctctttccttcatcgtaacaactcctgacaccgatgggattaacgttt 301
Query: 215 ccccagtatgactccttctgtggatgctcaagtggatcaccataaacttcacttgtgcta 274
|||||||| | ||| ||| ||||||| | |||||||||||||| || || || ||
Sbjct: 300 ccccagtaagtctcgacctgaggatgctgtaaaggatcaccataaacctcgctggtactg 241
Query: 275 gtcaacaaaaaccttgcaccaactcgctttgccagacccaacatattcaaagttcccatg 334
|| | ||||||||| |||||||||| ||| |||| ||||||||||||||| || |||| |
Sbjct: 240 gtaagcaaaaacctagcaccaactctcttagccaaacccaacatattcaatgtgcccacg 181
Query: 335 acatttgtcttgatcgtcttgattgggttatacttgtaatgaacgggcgacgcggggcat 394
|| || ||||| || ||||||| ||||| | |||||||||||| ||||| || || ||
Sbjct: 180 acgttagtctttattgtcttgaccgggttgtgcttgtaatgaacaggcgatgcaggacaa 121
Query: 395 gcgaggtggtagatccggtc 414
|| || ||||||||| ||||
Sbjct: 120 gcaagatggtagatctggtc 101
>gb|CK098211.1|CK098211 A007P62.5pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A007P62 5', mRNA sequence
Length = 385
Score = 109 bits (55), Expect = 2e-022
Identities = 161/195 (82%), Gaps = 1/195 (0%)
Strand = Plus / Minus
Query: 28 tagtgcctgtgcaacaaaattgctgaccacgcggccatcatcgagacacatacgaggacc 87
||||||||| ||||||||||| || || || ||||||||||| | ||||| ||||| ||
Sbjct: 229 tagtgcctgagcaacaaaattactaacaacacggccatcatctatgcacattcgaggtcc 170
Query: 88 atatgtattgaaaatgcgggcaatacgcacctcaacaccagcaccacgatgatagtccat 147
||| ||||||||||| | |||||| | ||||| ||||||||||| || |||||||||||
Sbjct: 169 ataagtattgaaaattctggcaatcctaacctctacaccagcacctcggtgatagtccat 110
Query: 148 agttgaagtctcggctgttctcttcccctcatcataacagctcctaacaccaataggatt 207
||| | ||||| || |||||||| | ||||| ||||| ||||| ||||| || |||||
Sbjct: 109 agtcaatgtctcagcagttctctt-tcttcatcgtaacaactcctgacaccgatgggatt 51
Query: 208 aacgtgcccccagta 222
||||| ||||||||
Sbjct: 50 aacgtttccccagta 36
>gb|BU825809.1|BU825809 UK113TD01 Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 552
Score = 107 bits (54), Expect = 8e-022
Identities = 141/170 (82%)
Strand = Plus / Minus
Query: 28 tagtgcctgtgcaacaaaattgctgaccacgcggccatcatcgagacacatacgaggacc 87
||||||||| ||||||||||| || || || ||||||||||| | ||||| ||||| ||
Sbjct: 338 tagtgcctgagcaacaaaattactaacaacacggccatcatctatgcacattcgaggtcc 279
Query: 88 atatgtattgaaaatgcgggcaatacgcacctcaacaccagcaccacgatgatagtccat 147
||| ||||||||||| | |||||| | ||||| ||||||||||| || |||||||||||
Sbjct: 278 ataagtattgaaaattctggcaatcctaacctctacaccagcacctcggtgatagtccat 219
Query: 148 agttgaagtctcggctgttctcttcccctcatcataacagctcctaacac 197
||| | ||||| || |||||||| || ||||| ||||| ||||| ||||
Sbjct: 218 agtcaatgtctcagcagttctctttccttcatcgtaacaactcctgacac 169
>gb|BI135440.1|BI135440 F051P45Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 257
Score = 103 bits (52), Expect = 1e-020
Identities = 161/196 (82%), Gaps = 1/196 (0%)
Strand = Plus / Minus
Query: 28 tagtgcctgtgcaacaaaattgctgaccacgcgg-ccatcatcgagacacatacgaggac 86
||||||||| ||||||||||| || || || ||| |||||||| | ||||| ||||| |
Sbjct: 225 tagtgcctgagcaacaaaattactaacaacacgggccatcatctatgcacattcgaggtc 166
Query: 87 catatgtattgaaaatgcgggcaatacgcacctcaacaccagcaccacgatgatagtcca 146
|||| ||||||||||| | ||||| | ||||| ||||||||||| || ||||||||||
Sbjct: 165 cataagtattgaaaattctagcaatcctaacctctacaccagcacctcggtgatagtcca 106
Query: 147 tagttgaagtctcggctgttctcttcccctcatcataacagctcctaacaccaataggat 206
|||| | ||||| || |||||||| || ||||| ||||| ||||| ||||| || ||||
Sbjct: 105 tagtcaatgtctcagcagttctctttccttcatcgtaacaactcctgacaccgatgggat 46
Query: 207 taacgtgcccccagta 222
|||||| ||||||||
Sbjct: 45 taacgttgccccagta 30
>gb|BI127468.1|BI127468 G061P13Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 441
Score = 99.6 bits (50), Expect = 2e-019
Identities = 140/170 (82%)
Strand = Plus / Minus
Query: 215 ccccagtatgactccttctgtggatgctcaagtggatcaccataaacttcacttgtgcta 274
||||| |||| ||||||||| ||||||||||| ||||| |||||||| ||||| || ||
Sbjct: 355 ccccaatatgtctccttctgcggatgctcaaggggatctccataaacctcactcgtactg 296
Query: 275 gtcaacaaaaaccttgcaccaactcgctttgccagacccaacatattcaaagttcccatg 334
|| | ||||||||| || || || | ||| |||| |||||||||||| | || |||||
Sbjct: 295 gttagcaaaaacctcgcccctaccctcttcgccaaacccaacatattgagcgtgcccatc 236
Query: 335 acatttgtcttgatcgtcttgattgggttatacttgtaatgaacgggcga 384
||||| ||||| || ||||||| ||||||||| || |||||||| |||||
Sbjct: 235 acattagtcttaatagtcttgactgggttatatttataatgaactggcga 186
>gb|CK102028.1|CK102028 G061P13.5pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G061P13 5', mRNA sequence
Length = 432
Score = 99.6 bits (50), Expect = 2e-019
Identities = 140/170 (82%)
Strand = Plus / Minus
Query: 215 ccccagtatgactccttctgtggatgctcaagtggatcaccataaacttcacttgtgcta 274
||||| |||| ||||||||| ||||||||||| ||||| |||||||| ||||| || ||
Sbjct: 354 ccccaatatgtctccttctgcggatgctcaaggggatctccataaacctcactcgtactg 295
Query: 275 gtcaacaaaaaccttgcaccaactcgctttgccagacccaacatattcaaagttcccatg 334
|| | ||||||||| || || || | ||| |||| |||||||||||| | || |||||
Sbjct: 294 gttagcaaaaacctcgcccctaccctcttcgccaaacccaacatattgagcgtgcccatc 235
Query: 335 acatttgtcttgatcgtcttgattgggttatacttgtaatgaacgggcga 384
||||| ||||| || ||||||| ||||||||| || |||||||| |||||
Sbjct: 234 acattagtcttaatagtcttgactgggttatatttataatgaactggcga 185
>gb|CA928802.1|CA928802 MTU6TR.P7.A07 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 599
Score = 95.6 bits (48), Expect = 3e-018
Identities = 158/195 (81%)
Strand = Plus / Minus
Query: 28 tagtgcctgtgcaacaaaattgctgaccacgcggccatcatcgagacacatacgaggacc 87
||||||| | ||||||||||| || || || ||||||||||| | ||||| ||||| ||
Sbjct: 240 tagtgcccgagcaacaaaattactaacaacacggccatcatctatgcacattcgaggtcc 181
Query: 88 atatgtattgaaaatgcgggcaatacgcacctcaacaccagcaccacgatgatagtccat 147
||| ||||||||||| | |||||| | ||||| |||||||| | || |||||||||||
Sbjct: 180 ataagtattgaaaattctggcaatcctaacctctacaccagcncatcggtgatagtccat 121
Query: 148 agttgaagtctcggctgttctcttcccctcatcataacagctcctaacaccaataggatt 207
||| | ||||| || |||||||| || ||||| ||||| ||||| ||||| || |||||
Sbjct: 120 agtcaatgtctcagcagttctctttccttcatcgtaacaactcctgacaccgatgggatt 61
Query: 208 aacgtgcccccagta 222
|||| ||||||||
Sbjct: 60 gacgtttccccagta 46
>gb|DT494155.1|DT494155 WS01117.BR_J07 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01117_J07 5', mRNA sequence
Length = 871
Score = 93.7 bits (47), Expect = 1e-017
Identities = 137/167 (82%)
Strand = Plus / Minus
Query: 248 ggatcaccataaacttcacttgtgctagtcaacaaaaaccttgcaccaactcgctttgcc 307
|||||||||||||| || || || || || | ||||||||| |||||||||| ||| |||
Sbjct: 871 ggatcaccataaacctcgctggtactggtaagcaaaaacctagcaccaactctcttagcc 812
Query: 308 agacccaacatattcaaagttcccatgacatttgtcttgatcgtcttgattgggttatac 367
| ||||||||||||||| || |||| ||| || ||||| || ||||||| ||||| | |
Sbjct: 811 aaacccaacatattcaatgtgcccacgacgttagtctttattgtcttgaccgggttgtgc 752
Query: 368 ttgtaatgaacgggcgacgcggggcatgcgaggtggtagatccggtc 414
||||||||||| ||||| || || || || || ||||||||| ||||
Sbjct: 751 ttgtaatgaacaggcgatgcaggacaagcaagatggtagatctggtc 705
>gb|BI119774.1|BI119774 F005P05Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 302
Score = 89.7 bits (45), Expect = 2e-016
Identities = 151/185 (81%), Gaps = 1/185 (0%)
Strand = Plus / Minus
Query: 28 tagtgcctgtgcaacaaaattgctgaccacgcggccatcatcgagacacatacgaggacc 87
||||||||| ||||||||||| || || || ||||||||||| | ||||| ||||| ||
Sbjct: 226 tagtgcctgagcaacaaaattactaacaacacggccatcatctatgcacattcgaggtcc 167
Query: 88 atatgtattgaaaatgcgggcaatacgcacctcaacaccagcaccacgatgatagtccat 147
||| ||||||||||| | ||||| | ||||| ||||||||||| || |||||||||||
Sbjct: 166 ataagtattgaaaattctagcaatcctaacctctacaccagcacctcggtgatagtccat 107
Query: 148 agttgaagtctcggctgttctcttcccctca-tcataacagctcctaacaccaataggat 206
||| | ||||| || |||||||| || ||| | ||||| ||||| ||||| || ||||
Sbjct: 106 agtcaatgtctcagcagttctctttccttcattggtaacaactcctgacaccgatgggat 47
Query: 207 taacg 211
|||||
Sbjct: 46 taacg 42
>gb|DT473267.1|DT473267 WS01229.BR_B21 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01229_B21 5', mRNA sequence
Length = 913
Score = 87.7 bits (44), Expect = 7e-016
Identities = 170/212 (80%)
Strand = Plus / Minus
Query: 203 ggattaacgtgcccccagtatgactccttctgtggatgctcaagtggatcaccataaact 262
|||||||||||||||||||| | ||| ||| ||||||| || ||||||||||||||
Sbjct: 912 ggattaacgtgcccccagtaagtctcgacctgaggatgctgtagaggatcaccataaacc 853
Query: 263 tcacttgtgctagtcaacaaaaaccttgcaccaactcgctttgccagacccaacatattc 322
|| || || || || | |||||||| |||||||||| ||| |||| |||||||||||||
Sbjct: 852 tcgctggtactggtaagcaaaaaccgagcaccaactctcttagccaaacccaacatattc 793
Query: 323 aaagttcccatgacatttgtcttgatcgtcttgattgggttatacttgtaatgaacgggc 382
|| || |||| ||||| || || |||||||||| || || | |||||| || || |||
Sbjct: 792 aatgtgcccacaacattagtttttatcgtcttgaccggattgtgcttgtagtggacaggc 733
Query: 383 gacgcggggcatgcgaggtggtagatccggtc 414
|| || || || || |||||||||||| ||||
Sbjct: 732 gatgcaggacaagcaaggtggtagatctggtc 701
>gb|BI132071.1|BI132071 G130P62Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 463
Score = 85.7 bits (43), Expect = 3e-015
Identities = 136/167 (81%)
Strand = Plus / Minus
Query: 248 ggatcaccataaacttcacttgtgctagtcaacaaaaaccttgcaccaactcgctttgcc 307
|||||||||||||| || || || || || | || |||||| |||||||||| ||| |||
Sbjct: 416 ggatcaccataaacctcgctggtactggtaagcacaaacctagcaccaactctcttagcc 357
Query: 308 agacccaacatattcaaagttcccatgacatttgtcttgatcgtcttgattgggttatac 367
| ||||||||||||||| || |||| ||| || ||||| || ||||||| ||||| | |
Sbjct: 356 aaacccaacatattcaatgtgcccacgacgttagtctttattgtcttgaccgggttgtgc 297
Query: 368 ttgtaatgaacgggcgacgcggggcatgcgaggtggtagatccggtc 414
||||||||||| ||||| || || || || || ||||||||| ||||
Sbjct: 296 ttgtaatgaacaggcgatgcaggacaagcaagatggtagatctggtc 250
>gb|CX653925.1|CX653925 PO02009F04 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02009F04 5', mRNA sequence
Length = 495
Score = 85.7 bits (43), Expect = 3e-015
Identities = 136/167 (81%)
Strand = Plus / Minus
Query: 248 ggatcaccataaacttcacttgtgctagtcaacaaaaaccttgcaccaactcgctttgcc 307
|||||||||||||| || || || || || | ||||||||| |||||||||| ||| |||
Sbjct: 240 ggatcaccataaacctcgctggtactggtaagcaaaaacctagcaccaactctcttagcc 181
Query: 308 agacccaacatattcaaagttcccatgacatttgtcttgatcgtcttgattgggttatac 367
| |||||| |||||||| || |||| ||| || ||||| || ||||||| ||||| | |
Sbjct: 180 aaacccaaaatattcaatgtgcccacgacgttagtctttattgtcttgaccgggttgtgc 121
Query: 368 ttgtaatgaacgggcgacgcggggcatgcgaggtggtagatccggtc 414
||||||||||| ||||| || || || || || ||||||||| ||||
Sbjct: 120 ttgtaatgaacaggcgatgcaggacaagcaagatggtagatctggtc 74
>gb|DN493626.1|DN493626 G073P36.5pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G073P36 5', mRNA sequence
Length = 757
Score = 77.8 bits (39), Expect = 7e-013
Identities = 96/115 (83%)
Strand = Plus / Minus
Query: 33 cctgtgcaacaaaattgctgaccacgcggccatcatcgagacacatacgaggaccatatg 92
|||| ||||| ||||| ||||| || || |||||||| | |||||| ||||| |||||||
Sbjct: 165 cctgagcaacgaaattactgacaacacgtccatcatccaaacacatgcgaggcccatatg 106
Query: 93 tattgaaaatgcgggcaatacgcacctcaacaccagcaccacgatgatagtccat 147
|||| || ||||| |||||||||||||| ||| | ||||| || ||||| |||||
Sbjct: 105 tattaaatatgcgagcaatacgcacctcgacatctgcacctcggtgataatccat 51
>gb|DT523430.1|DT523430 WS02039.B21_K21 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02039_K21 3', mRNA sequence
Length = 890
Score = 77.8 bits (39), Expect = 7e-013
Identities = 96/115 (83%)
Strand = Plus / Plus
Query: 33 cctgtgcaacaaaattgctgaccacgcggccatcatcgagacacatacgaggaccatatg 92
|||| ||||| ||||| ||||| || || |||||||| | |||||| ||||| |||||||
Sbjct: 667 cctgagcaacgaaattactgacaacacgtccatcatccaaacacatgcgaggcccatatg 726
Query: 93 tattgaaaatgcgggcaatacgcacctcaacaccagcaccacgatgatagtccat 147
|||| || ||||| |||||||||||||| ||| | ||||| || ||||| |||||
Sbjct: 727 tattaaatatgcgagcaatacgcacctcgacatctgcacctcggtgataatccat 781
>gb|AI161839.1|AI161839 A007P62U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 531
Score = 73.8 bits (37), Expect = 1e-011
Identities = 82/97 (84%)
Strand = Plus / Minus
Query: 116 acctcaacaccagcaccacgatgatagtccatagttgaagtctcggctgttctcttcccc 175
||||| ||||||||||| || |||||||||||||| | ||||| || |||||||| ||
Sbjct: 97 acctctacaccagcacctcggtgatagtccatagtcaatgtctcagcagttctctttcct 38
Query: 176 tcatcataacagctcctaacaccaataggattaacgt 212
||||| ||||| ||||| ||||| || ||||||||||
Sbjct: 37 tcatcgtaacaactcctgacaccgatgggattaacgt 1
>gb|DT472669.1|DT472669 WS01227.BR.1_C10 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01227_C10 5', mRNA sequence
Length = 830
Score = 73.8 bits (37), Expect = 1e-011
Identities = 103/125 (82%)
Strand = Plus / Minus
Query: 290 gcaccaactcgctttgccagacccaacatattcaaagttcccatgacatttgtcttgatc 349
|||||||||| ||| |||| ||||||||||||||| || |||| ||| || ||||| ||
Sbjct: 829 gcaccaactctcttagccaaacccaacatattcaatgtgcccacgacgttagtctttatt 770
Query: 350 gtcttgattgggttatacttgtaatgaacgggcgacgcggggcatgcgaggtggtagatc 409
||||||| ||||| | |||||||||||| ||||| || || || || || |||||||||
Sbjct: 769 gtcttgaccgggttgtgcttgtaatgaacaggcgatgcaggacaagcaagatggtagatc 710
Query: 410 cggtc 414
||||
Sbjct: 709 tggtc 705
>gb|CK091807.1|CK091807 F127P19.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F127P19 3', mRNA sequence
Length = 844
Score = 71.9 bits (36), Expect = 4e-011
Identities = 75/88 (85%)
Strand = Plus / Plus
Query: 33 cctgtgcaacaaaattgctgaccacgcggccatcatcgagacacatacgaggaccatatg 92
|||| ||||| ||||| ||||| || || |||||||| | |||||| ||||| |||||||
Sbjct: 696 cctgagcaacgaaattactgacaacacgtccatcatccaaacacatgcgaggcccatatg 755
Query: 93 tattgaaaatgcgggcaatacgcacctc 120
|||| || ||||| ||||||||||||||
Sbjct: 756 tattaaatatgcgagcaatacgcacctc 783
>gb|CV236293.1|CV236293 WS01223.B21_J13 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01223_J13 3', mRNA sequence
Length = 867
Score = 71.9 bits (36), Expect = 4e-011
Identities = 75/88 (85%)
Strand = Plus / Plus
Query: 33 cctgtgcaacaaaattgctgaccacgcggccatcatcgagacacatacgaggaccatatg 92
|||| ||||| ||||| ||||| || || |||||||| | |||||| ||||| |||||||
Sbjct: 764 cctgagcaacgaaattactgacaacacgtccatcatccaaacacatgcgaggcccatatg 823
Query: 93 tattgaaaatgcgggcaatacgcacctc 120
|||| || ||||| ||||||||||||||
Sbjct: 824 tattaaatatgcgagcaatacgcacctc 851
>gb|DT499631.1|DT499631 WS0118.BR_N17 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0118_N17
5', mRNA sequence
Length = 565
Score = 71.9 bits (36), Expect = 4e-011
Identities = 75/88 (85%)
Strand = Plus / Minus
Query: 33 cctgtgcaacaaaattgctgaccacgcggccatcatcgagacacatacgaggaccatatg 92
|||| ||||| ||||| ||||| || || |||||||| | |||||| ||||| |||||||
Sbjct: 88 cctgagcaacgaaattactgacaacacgtccatcatccaaacacatgcgaggcccatatg 29
Query: 93 tattgaaaatgcgggcaatacgcacctc 120
|||| || ||||| ||||||||||||||
Sbjct: 28 tattaaatatgcgagcaatacgcacctc 1
>gb|AI164673.1|AI164673 A067P03U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 336
Score = 61.9 bits (31), Expect = 4e-008
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 280 caaaaaccttgcaccaactcgctttgccagacccaacatattcaaagttcccatgacatt 339
||||| |||||| ||||||||||| || || |||||||||||||| || || || |||||
Sbjct: 136 caaaatccttgccccaactcgcttggcaagtcccaacatattcaatgtcccgatcacatt 77
Query: 340 tgtcttgatcgtctt 354
|||||| || |||||
Sbjct: 76 tgtctttatggtctt 62
>gb|BI128391.1|BI128391 G075P18Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 536
Score = 61.9 bits (31), Expect = 4e-008
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 280 caaaaaccttgcaccaactcgctttgccagacccaacatattcaaagttcccatgacatt 339
||||| |||||| ||||||||||| || || |||||||||||||| || || || |||||
Sbjct: 479 caaaatccttgccccaactcgcttggcaagtcccaacatattcaatgtcccgatcacatt 420
Query: 340 tgtcttgatcgtctt 354
|||||| || |||||
Sbjct: 419 tgtctttatggtctt 405
>gb|BI128926.1|BI128926 G083P61Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 515
Score = 61.9 bits (31), Expect = 4e-008
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 280 caaaaaccttgcaccaactcgctttgccagacccaacatattcaaagttcccatgacatt 339
||||| |||||| ||||||||||| || || |||||||||||||| || || || |||||
Sbjct: 414 caaaatccttgccccaactcgcttggcaagtcccaacatattcaatgtcccgatcacatt 355
Query: 340 tgtcttgatcgtctt 354
|||||| || |||||
Sbjct: 354 tgtctttatggtctt 340
>gb|BI129307.1|BI129307 G088P86Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 525
Score = 61.9 bits (31), Expect = 4e-008
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 280 caaaaaccttgcaccaactcgctttgccagacccaacatattcaaagttcccatgacatt 339
||||| |||||| ||||||||||| || || |||||||||||||| || || || |||||
Sbjct: 482 caaaatccttgccccaactcgcttggcaagtcccaacatattcaatgtcccgatcacatt 423
Query: 340 tgtcttgatcgtctt 354
|||||| || |||||
Sbjct: 422 tgtctttatggtctt 408
>gb|BI129429.1|BI129429 G090P59Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 548
Score = 61.9 bits (31), Expect = 4e-008
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 280 caaaaaccttgcaccaactcgctttgccagacccaacatattcaaagttcccatgacatt 339
||||| |||||| ||||||||||| || || |||||||||||||| || || || |||||
Sbjct: 481 caaaatccttgccccaactcgcttggcaagtcccaacatattcaatgtcccgatcacatt 422
Query: 340 tgtcttgatcgtctt 354
|||||| || |||||
Sbjct: 421 tgtctttatggtctt 407
>gb|BI129524.1|BI129524 G091P86Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 527
Score = 61.9 bits (31), Expect = 4e-008
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 280 caaaaaccttgcaccaactcgctttgccagacccaacatattcaaagttcccatgacatt 339
||||| |||||| ||||||||||| || || |||||||||||||| || || || |||||
Sbjct: 481 caaaatccttgccccaactcgcttggcaagtcccaacatattcaatgtcccgatcacatt 422
Query: 340 tgtcttgatcgtctt 354
|||||| || |||||
Sbjct: 421 tgtctttatggtctt 407
>gb|BI129711.1|BI129711 G094P70Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 534
Score = 61.9 bits (31), Expect = 4e-008
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 280 caaaaaccttgcaccaactcgctttgccagacccaacatattcaaagttcccatgacatt 339
||||| |||||| ||||||||||| || || |||||||||||||| || || || |||||
Sbjct: 306 caaaatccttgccccaactcgcttggcaagtcccaacatattcaatgtcccgatcacatt 247
Query: 340 tgtcttgatcgtctt 354
|||||| || |||||
Sbjct: 246 tgtctttatggtctt 232
>gb|BI130919.1|BI130919 G112P69Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 541
Score = 61.9 bits (31), Expect = 4e-008
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 280 caaaaaccttgcaccaactcgctttgccagacccaacatattcaaagttcccatgacatt 339
||||| |||||| ||||||||||| || || |||||||||||||| || || || |||||
Sbjct: 481 caaaatccttgccccaactcgcttggcaagtcccaacatattcaatgtcccgatcacatt 422
Query: 340 tgtcttgatcgtctt 354
|||||| || |||||
Sbjct: 421 tgtctttatggtctt 407
>gb|BI131682.1|BI131682 G124P28Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 537
Score = 61.9 bits (31), Expect = 4e-008
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 280 caaaaaccttgcaccaactcgctttgccagacccaacatattcaaagttcccatgacatt 339
||||| |||||| ||||||||||| || || |||||||||||||| || || || |||||
Sbjct: 471 caaaatccttgccccaactcgcttggcaagtcccaacatattcaatgtcccgatcacatt 412
Query: 340 tgtcttgatcgtctt 354
|||||| || |||||
Sbjct: 411 tgtctttatggtctt 397
>gb|BU867751.1|BU867751 M103H04 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 615
Score = 61.9 bits (31), Expect = 4e-008
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 280 caaaaaccttgcaccaactcgctttgccagacccaacatattcaaagttcccatgacatt 339
||||| |||||| ||||||||||| || || |||||||||||||| || || || |||||
Sbjct: 492 caaaatccttgccccaactcgcttggcaagtcccaacatattcaatgtcccgatcacatt 433
Query: 340 tgtcttgatcgtctt 354
|||||| || |||||
Sbjct: 432 tgtctttatggtctt 418
>gb|BU890966.1|BU890966 P044B01 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 589
Score = 61.9 bits (31), Expect = 4e-008
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 280 caaaaaccttgcaccaactcgctttgccagacccaacatattcaaagttcccatgacatt 339
||||| |||||| ||||||||||| || || |||||||||||||| || || || |||||
Sbjct: 491 caaaatccttgccccaactcgcttggcaagtcccaacatattcaatgtcccgatcacatt 432
Query: 340 tgtcttgatcgtctt 354
|||||| || |||||
Sbjct: 431 tgtctttatggtctt 417
>gb|BU896113.1|BU896113 X035G02 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 764
Score = 61.9 bits (31), Expect = 4e-008
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 280 caaaaaccttgcaccaactcgctttgccagacccaacatattcaaagttcccatgacatt 339
||||| |||||| ||||||||||| || || |||||||||||||| || || || |||||
Sbjct: 496 caaaatccttgccccaactcgcttggcaagtcccaacatattcaatgtcccgatcacatt 437
Query: 340 tgtcttgatcgtctt 354
|||||| || |||||
Sbjct: 436 tgtctttatggtctt 422
>gb|CF227845.1|CF227845 PtaXM0005D5D0507 Poplar cDNA library from mature xylem Populus alba
x Populus tremula cDNA 5', mRNA sequence
Length = 714
Score = 61.9 bits (31), Expect = 4e-008
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 280 caaaaaccttgcaccaactcgctttgccagacccaacatattcaaagttcccatgacatt 339
||||| |||||| ||||||||||| || || |||||||||||||| || || || |||||
Sbjct: 566 caaaatccttgccccaactcgcttggcaagtcccaacatattcaatgtcccgatcacatt 507
Query: 340 tgtcttgatcgtctt 354
|||||| || |||||
Sbjct: 506 tgtctttatggtctt 492
>gb|CF230986.1|CF230986 PtaC0016A10A1002 Poplar cDNA library from cambial zone Populus alba
x Populus tremula cDNA 5', mRNA sequence
Length = 772
Score = 61.9 bits (31), Expect = 4e-008
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 280 caaaaaccttgcaccaactcgctttgccagacccaacatattcaaagttcccatgacatt 339
||||| |||||| ||||||||||| || || |||||||||||||| || || || |||||
Sbjct: 516 caaaatccttgccccaactcgcttggcaagtcccaacatattcaatgtcccgatcacatt 457
Query: 340 tgtcttgatcgtctt 354
|||||| || |||||
Sbjct: 456 tgtctttatggtctt 442
>gb|CF231427.1|CF231427 PtaC0021C8C0806 Poplar cDNA library from cambial zone Populus alba
x Populus tremula cDNA 5', mRNA sequence
Length = 772
Score = 61.9 bits (31), Expect = 4e-008
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 280 caaaaaccttgcaccaactcgctttgccagacccaacatattcaaagttcccatgacatt 339
||||| |||||| ||||||||||| || || |||||||||||||| || || || |||||
Sbjct: 493 caaaatccttgccccaactcgcttggcaagtcccaacatattcaatgtcccgatcacatt 434
Query: 340 tgtcttgatcgtctt 354
|||||| || |||||
Sbjct: 433 tgtctttatggtctt 419
>gb|CF233086.1|CF233086 PtaJXO0019B7B0703 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 716
Score = 61.9 bits (31), Expect = 4e-008
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 280 caaaaaccttgcaccaactcgctttgccagacccaacatattcaaagttcccatgacatt 339
||||| |||||| ||||||||||| || || |||||||||||||| || || || |||||
Sbjct: 495 caaaatccttgccccaactcgcttggcaagtcccaacatattcaatgtcccgatcacatt 436
Query: 340 tgtcttgatcgtctt 354
|||||| || |||||
Sbjct: 435 tgtctttatggtctt 421
>gb|CF234119.1|CF234119 PtaJXO2G2G0214 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 579
Score = 61.9 bits (31), Expect = 4e-008
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 280 caaaaaccttgcaccaactcgctttgccagacccaacatattcaaagttcccatgacatt 339
||||| |||||| ||||||||||| || || |||||||||||||| || || || |||||
Sbjct: 491 caaaatccttgccccaactcgcttggcaagtcccaacatattcaatgtcccgatcacatt 432
Query: 340 tgtcttgatcgtctt 354
|||||| || |||||
Sbjct: 431 tgtctttatggtctt 417
>gb|CF235592.1|CF235592 PtaJXT0024F4F0412 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 663
Score = 61.9 bits (31), Expect = 4e-008
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 280 caaaaaccttgcaccaactcgctttgccagacccaacatattcaaagttcccatgacatt 339
||||| |||||| ||||||||||| || || |||||||||||||| || || || |||||
Sbjct: 495 caaaatccttgccccaactcgcttggcaagtcccaacatattcaatgtcccgatcacatt 436
Query: 340 tgtcttgatcgtctt 354
|||||| || |||||
Sbjct: 435 tgtctttatggtctt 421
>gb|CF237019.1|CF237019 PtaJXT9H1H0115 Poplar cDNA library from young tension xylem Populus
alba x Populus tremula cDNA 5', mRNA sequence
Length = 659
Score = 61.9 bits (31), Expect = 4e-008
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 280 caaaaaccttgcaccaactcgctttgccagacccaacatattcaaagttcccatgacatt 339
||||| |||||| ||||||||||| || || |||||||||||||| || || || |||||
Sbjct: 498 caaaatccttgccccaactcgcttggcaagtcccaacatattcaatgtcccgatcacatt 439
Query: 340 tgtcttgatcgtctt 354
|||||| || |||||
Sbjct: 438 tgtctttatggtctt 424
>gb|CF237340.1|CF237340 Ptajxtjxt4H6H0616 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 702
Score = 61.9 bits (31), Expect = 4e-008
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 280 caaaaaccttgcaccaactcgctttgccagacccaacatattcaaagttcccatgacatt 339
||||| |||||| ||||||||||| || || |||||||||||||| || || || |||||
Sbjct: 482 caaaatccttgccccaactcgcttggcaagtcccaacatattcaatgtcccgatcacatt 423
Query: 340 tgtcttgatcgtctt 354
|||||| || |||||
Sbjct: 422 tgtctttatggtctt 408
>gb|CK093218.1|CK093218 G112P18.3pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G112P18 3', mRNA sequence
Length = 817
Score = 61.9 bits (31), Expect = 4e-008
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 280 caaaaaccttgcaccaactcgctttgccagacccaacatattcaaagttcccatgacatt 339
||||| |||||| ||||||||||| || || |||||||||||||| || || || |||||
Sbjct: 479 caaaatccttgccccaactcgcttggcaagtcccaacatattcaatgtcccgatcacatt 420
Query: 340 tgtcttgatcgtctt 354
|||||| || |||||
Sbjct: 419 tgtctttatggtctt 405
>gb|CN521035.1|CN521035 GQ0105.B3_B09 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0105_B09 5', mRNA sequence
Length = 835
Score = 61.9 bits (31), Expect = 4e-008
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 280 caaaaaccttgcaccaactcgctttgccagacccaacatattcaaagttcccatgacatt 339
||||| |||||| ||||||||||| || || |||||||||||||| || || || |||||
Sbjct: 487 caaaatccttgccccaactcgcttggcaagtcccaacatattcaatgtcccgatcacatt 428
Query: 340 tgtcttgatcgtctt 354
|||||| || |||||
Sbjct: 427 tgtctttatggtctt 413
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 86,606
Number of Sequences: 369679
Number of extensions: 86606
Number of successful extensions: 24480
Number of sequences better than 0.5: 121
Number of HSP's better than 0.5 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24284
Number of HSP's gapped (non-prelim): 191
length of query: 950
length of database: 203,408,664
effective HSP length: 19
effective length of query: 931
effective length of database: 196,384,763
effective search space: 182834214353
effective search space used: 182834214353
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)