BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3866402.2.1
(406 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU819078.1|BU819078 UA39BPB02 Populus tremula cambium cD... 38 0.25
gb|BU896477.1|BU896477 X041A06 Populus wood cDNA library Po... 38 0.25
gb|CK088908.1|CK088908 A079P12.3pR Hybrid aspen plasmid lib... 38 0.25
gb|CN517705.1|CN517705 GQ0092.B3_H22 GQ009 Populus trichoca... 38 0.25
gb|CN549860.1|CN549860 GQ0243.B3_A18 GQ024 Populus trichoca... 38 0.25
gb|AJ772216.1|AJ772216 AJ772216 Populus euphratica shoot in... 38 0.25
gb|CV228298.1|CV228298 WS0191.B21_K13 PT-DX-N-A-10 Populus ... 38 0.25
gb|CV229682.1|CV229682 WS01914.B21_B17 PT-DX-N-A-10 Populus... 38 0.25
gb|CV230081.1|CV230081 WS01915.B21_F22 PT-DX-N-A-10 Populus... 38 0.25
gb|CV264055.1|CV264055 WS02023.B21_H24 PTxN-IB-N-A-11 Popul... 38 0.25
gb|CV275032.1|CV275032 WS0175.B21_C07 PTxD-NR-A-8 Populus t... 38 0.25
gb|CX168355.1|CX168355 A12_69-60_02.ab1 leaf inoculated wit... 38 0.25
gb|DT524325.1|DT524325 WS02042.C21.1_F05 PTxN-IB-N-A-11 Pop... 38 0.25
>gb|BU819078.1|BU819078 UA39BPB02 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 497
Score = 38.2 bits (19), Expect = 0.25
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 235 tggaactccgagacaaatgggaaccatgcca 265
|||||||| || |||||||||||||| ||||
Sbjct: 307 tggaactcggaaacaaatgggaaccaagcca 277
>gb|BU896477.1|BU896477 X041A06 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 684
Score = 38.2 bits (19), Expect = 0.25
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 235 tggaactccgagacaaatgggaaccatgcca 265
|||||||| || |||||||||||||| ||||
Sbjct: 271 tggaactcggaaacaaatgggaaccaagcca 241
>gb|CK088908.1|CK088908 A079P12.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A079P12 3', mRNA sequence
Length = 683
Score = 38.2 bits (19), Expect = 0.25
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 235 tggaactccgagacaaatgggaaccatgcca 265
|||||||| || |||||||||||||| ||||
Sbjct: 445 tggaactcggaaacaaatgggaaccaagcca 475
>gb|CN517705.1|CN517705 GQ0092.B3_H22 GQ009 Populus trichocarpa x Populus deltoides cDNA
clone GQ0092_H22 5', mRNA sequence
Length = 481
Score = 38.2 bits (19), Expect = 0.25
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 235 tggaactccgagacaaatgggaaccatgcca 265
|||||||| || |||||||||||||| ||||
Sbjct: 100 tggaactcggaaacaaatgggaaccaagcca 70
>gb|CN549860.1|CN549860 GQ0243.B3_A18 GQ024 Populus trichocarpa x Populus deltoides cDNA
clone GQ0243_A18 5', mRNA sequence
Length = 536
Score = 38.2 bits (19), Expect = 0.25
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 235 tggaactccgagacaaatgggaaccatgcca 265
|||||||| || |||||||||||||| ||||
Sbjct: 89 tggaactcggaaacaaatgggaaccaagcca 59
>gb|AJ772216.1|AJ772216 AJ772216 Populus euphratica shoot in vitro plantlet Israel Populus
euphratica cDNA clone P0001700003A08F1, mRNA sequence
Length = 527
Score = 38.2 bits (19), Expect = 0.25
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 235 tggaactccgagacaaatgggaaccatgcca 265
|||||||| || |||||||||||||| ||||
Sbjct: 298 tggaactcggaaacaaatgggaaccaagcca 328
>gb|CV228298.1|CV228298 WS0191.B21_K13 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0191_K13 3', mRNA sequence
Length = 735
Score = 38.2 bits (19), Expect = 0.25
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 235 tggaactccgagacaaatgggaaccatgcca 265
|||||||| || |||||||||||||| ||||
Sbjct: 470 tggaactcggaaacaaatgggaaccaagcca 500
>gb|CV229682.1|CV229682 WS01914.B21_B17 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01914_B17 3', mRNA sequence
Length = 679
Score = 38.2 bits (19), Expect = 0.25
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 235 tggaactccgagacaaatgggaaccatgcca 265
|||||||| || |||||||||||||| ||||
Sbjct: 470 tggaactcggaaacaaatgggaaccaagcca 500
>gb|CV230081.1|CV230081 WS01915.B21_F22 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01915_F22 3', mRNA sequence
Length = 664
Score = 38.2 bits (19), Expect = 0.25
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 235 tggaactccgagacaaatgggaaccatgcca 265
|||||||| || |||||||||||||| ||||
Sbjct: 234 tggaactcggaaacaaatgggaaccaagcca 204
>gb|CV264055.1|CV264055 WS02023.B21_H24 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02023_H24 3', mRNA sequence
Length = 839
Score = 38.2 bits (19), Expect = 0.25
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 235 tggaactccgagacaaatgggaaccatgcca 265
|||||||| || |||||||||||||| ||||
Sbjct: 471 tggaactcggaaacaaatgggaaccaagcca 501
>gb|CV275032.1|CV275032 WS0175.B21_C07 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS0175_C07 3', mRNA sequence
Length = 826
Score = 38.2 bits (19), Expect = 0.25
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 235 tggaactccgagacaaatgggaaccatgcca 265
|||||||| || |||||||||||||| ||||
Sbjct: 456 tggaactcggaaacaaatgggaaccaagcca 486
>gb|CX168355.1|CX168355 A12_69-60_02.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 664
Score = 38.2 bits (19), Expect = 0.25
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 235 tggaactccgagacaaatgggaaccatgcca 265
|||||||| || |||||||||||||| ||||
Sbjct: 280 tggaactcggaaacaaatgggaaccaagcca 250
>gb|DT524325.1|DT524325 WS02042.C21.1_F05 PTxN-IB-N-A-11 Populus trichocarpa x Populus
nigra cDNA clone WS02042_F05 3', mRNA sequence
Length = 884
Score = 38.2 bits (19), Expect = 0.25
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 235 tggaactccgagacaaatgggaaccatgcca 265
|||||||| || |||||||||||||| ||||
Sbjct: 473 tggaactcggaaacaaatgggaaccaagcca 503
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 41,936
Number of Sequences: 369679
Number of extensions: 41936
Number of successful extensions: 10949
Number of sequences better than 0.5: 13
Number of HSP's better than 0.5 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10936
Number of HSP's gapped (non-prelim): 13
length of query: 406
length of database: 203,408,664
effective HSP length: 18
effective length of query: 388
effective length of database: 196,754,442
effective search space: 76340723496
effective search space used: 76340723496
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)