BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3848982.2.1
         (697 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BU812821.1|BU812821  N001G11 Populus bark cDNA library Po...    38   0.43 
gb|DN485401.1|DN485401  N001G11.3pR Populus bark cDNA librar...    38   0.43 
gb|DN494875.1|DN494875  N001G11.5pR Populus bark cDNA librar...    38   0.43 

>gb|BU812821.1|BU812821 N001G11 Populus bark cDNA library Populus tremula x Populus
           tremuloides cDNA 5 prime, mRNA sequence
          Length = 281

 Score = 38.2 bits (19), Expect = 0.43
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 644 tcaacatatatataataat 662
           |||||||||||||||||||
Sbjct: 146 tcaacatatatataataat 128



>gb|DN485401.1|DN485401 N001G11.3pR Populus bark cDNA library Populus tremula x Populus
           tremuloides cDNA clone N001G11 3', mRNA sequence
          Length = 231

 Score = 38.2 bits (19), Expect = 0.43
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 644 tcaacatatatataataat 662
           |||||||||||||||||||
Sbjct: 65  tcaacatatatataataat 83



>gb|DN494875.1|DN494875 N001G11.5pR Populus bark cDNA library Populus tremula x Populus
           tremuloides cDNA clone N001G11 5', mRNA sequence
          Length = 253

 Score = 38.2 bits (19), Expect = 0.43
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 644 tcaacatatatataataat 662
           |||||||||||||||||||
Sbjct: 177 tcaacatatatataataat 159



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 47,577
Number of Sequences: 369679
Number of extensions: 47577
Number of successful extensions: 11652
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11649
Number of HSP's gapped (non-prelim): 3
length of query: 697
length of database: 203,408,664
effective HSP length: 19
effective length of query: 678
effective length of database: 196,384,763
effective search space: 133148869314
effective search space used: 133148869314
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)