BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3848939.2.1
(952 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV227397.1|CV227397 WS0167.B21_B03 PT-DX-A-7 Populus tri... 42 0.038
gb|AI164665.1|AI164665 A066P70U Hybrid aspen plasmid librar... 40 0.15
gb|CK099414.1|CK099414 A066P70.5pR Hybrid aspen plasmid lib... 40 0.15
>gb|CV227397.1|CV227397 WS0167.B21_B03 PT-DX-A-7 Populus trichocarpa cDNA clone WS0167_B03
3', mRNA sequence
Length = 642
Score = 42.1 bits (21), Expect = 0.038
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 87 ctagtcgtcgtcgtcgtcatc 107
|||||||||||||||||||||
Sbjct: 123 ctagtcgtcgtcgtcgtcatc 103
>gb|AI164665.1|AI164665 A066P70U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 324
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 88 tagtcgtcgtcgtcgtcatc 107
||||||||||||||||||||
Sbjct: 114 tagtcgtcgtcgtcgtcatc 95
>gb|CK099414.1|CK099414 A066P70.5pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A066P70 5', mRNA sequence
Length = 520
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 88 tagtcgtcgtcgtcgtcatc 107
||||||||||||||||||||
Sbjct: 150 tagtcgtcgtcgtcgtcatc 131
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 75,964
Number of Sequences: 369679
Number of extensions: 75964
Number of successful extensions: 19901
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19892
Number of HSP's gapped (non-prelim): 6
length of query: 952
length of database: 203,408,664
effective HSP length: 19
effective length of query: 933
effective length of database: 196,384,763
effective search space: 183226983879
effective search space used: 183226983879
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)