BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3848767.2.1
(1467 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC149575.1| Populus trichocarpa clone Pop1-41G18, comple... 44 0.015
>gb|AC149575.1| Populus trichocarpa clone Pop1-41G18, complete sequence
Length = 111678
Score = 44.1 bits (22), Expect = 0.015
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1314 ggtggtggtggtggtgtaggag 1335
||||||||||||||||||||||
Sbjct: 32351 ggtggtggtggtggtgtaggag 32372
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 130,729
Number of Sequences: 369679
Number of extensions: 130729
Number of successful extensions: 45499
Number of sequences better than 0.5: 1
Number of HSP's better than 0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45453
Number of HSP's gapped (non-prelim): 42
length of query: 1467
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1448
effective length of database: 196,384,763
effective search space: 284365136824
effective search space used: 284365136824
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)