BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3829479.2.1
(1245 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU878009.1|BU878009 V042A05 Populus flower cDNA library ... 58 8e-007
gb|BU882889.1|BU882889 UM83TF04 Populus flower cDNA library... 58 8e-007
gb|BU882965.1|BU882965 UM84TE12 Populus flower cDNA library... 58 8e-007
gb|BU883614.1|BU883614 UM95TA01 Populus flower cDNA library... 58 8e-007
gb|CV256507.1|CV256507 WS0244.B21_A19 PTxD-ICC-N-A-14 Popul... 58 8e-007
gb|DN484153.1|DN484153 PTRI27.5pR Populus cDNA, trichocarpa... 58 8e-007
gb|DN491294.1|DN491294 UM83TF04.3pR Populus female catkins ... 58 8e-007
gb|DN501305.1|DN501305 UM83TF04.5pR Populus female catkins ... 58 8e-007
gb|DT509633.1|DT509633 WS02424.BR_E10 PTxD-ICC-N-A-14 Popul... 58 8e-007
gb|DT510612.1|DT510612 WS02427.BR_A17 PTxD-ICC-N-A-14 Popul... 58 8e-007
gb|DT517651.1|DT517651 WS02434.B21_O16 PTxD-ICC-N-A-14 Popu... 58 8e-007
gb|DT520688.1|DT520688 WS02448.B21_E04 PTxD-ICC-N-A-14 Popu... 58 8e-007
gb|CN519626.1|CN519626 GQ0104.B3_J10 GQ010 Populus trichoca... 42 0.050
gb|DT515243.1|DT515243 WS02427.B21_A17 PTxD-ICC-N-A-14 Popu... 42 0.050
gb|AF052571.1|AF052571 Populus balsamifera subsp. trichocar... 42 0.050
gb|AY359607.1| Populus yunnanensis sex male AGAMOUS (AG2) g... 42 0.050
gb|AY359609.1| Populus tomentosa sex female AGAMOUS (AG2) g... 42 0.050
gb|CX178021.1|CX178021 B01_45-88_03.ab1 leaf inoculated wit... 40 0.20
gb|DT514239.1|DT514239 WS02424.B21_E10 PTxD-ICC-N-A-14 Popu... 40 0.20
gb|DT518766.1|DT518766 WS02439.B21_D01 PTxD-ICC-N-A-14 Popu... 40 0.20
gb|AY359611.1| Populus tomentosa sex male AGAMOUS (AG2) gen... 40 0.20
gb|AY359612.1| Populus tomentosa sex male AGAMOUS (AG1) gen... 40 0.20
>gb|BU878009.1|BU878009 V042A05 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 278
Score = 58.0 bits (29), Expect = 8e-007
Identities = 83/101 (82%)
Strand = Plus / Minus
Query: 787 gccttcttgtacctctcaatggtggacttcacactgttgttggcgtactcgtagaggcgg 846
||||| |||||||| ||||| || || || ||||| ||||| | |||||| || |||||
Sbjct: 269 gcctttttgtacctttcaattgtagatttgacactattgttagagtactcataaaggcgt 210
Query: 847 ccgcggctggagaagacgacgagcgcgacctcggcgtcgca 887
|| |||||||||||||||| ||| || ||||| || |||||
Sbjct: 209 ccacggctggagaagacgatgagtgcaacctcagcatcgca 169
>gb|BU882889.1|BU882889 UM83TF04 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 588
Score = 58.0 bits (29), Expect = 8e-007
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 821 tgttgttggcgtactcgtagaggcggccgcggctggagaagacga 865
|||||||||||||||| ||||| ||||| ||||| ||||||||||
Sbjct: 285 tgttgttggcgtactcatagagacggccacggctagagaagacga 241
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 961 gtgttctcgatgcgcttgatctcgatcttgcctct 995
||||||||||| | ||||||||||||||| |||||
Sbjct: 145 gtgttctcgatcctcttgatctcgatctttcctct 111
>gb|BU882965.1|BU882965 UM84TE12 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 562
Score = 58.0 bits (29), Expect = 8e-007
Identities = 83/101 (82%)
Strand = Plus / Minus
Query: 787 gccttcttgtacctctcaatggtggacttcacactgttgttggcgtactcgtagaggcgg 846
||||| |||||||| ||||| || || || ||||| ||||| | |||||| || |||||
Sbjct: 410 gcctttttgtacctttcaattgtagatttgacactattgttagagtactcataaaggcgt 351
Query: 847 ccgcggctggagaagacgacgagcgcgacctcggcgtcgca 887
|| |||||||||||||||| ||| || ||||| || |||||
Sbjct: 350 ccacggctggagaagacgatgagtgcaacctcagcatcgca 310
>gb|BU883614.1|BU883614 UM95TA01 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 613
Score = 58.0 bits (29), Expect = 8e-007
Identities = 83/101 (82%)
Strand = Plus / Minus
Query: 787 gccttcttgtacctctcaatggtggacttcacactgttgttggcgtactcgtagaggcgg 846
||||| |||||||||||||| || || || ||||| | ||| | |||||| || |||||
Sbjct: 487 gcctttttgtacctctcaattgttgatttgacactatcgttagagtactcataaaggcga 428
Query: 847 ccgcggctggagaagacgacgagcgcgacctcggcgtcgca 887
|||||||| |||||||||| ||| || ||||| || |||||
Sbjct: 427 ccgcggctagagaagacgatgagtgcaacctcagcatcgca 387
>gb|CV256507.1|CV256507 WS0244.B21_A19 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0244_A19 3', mRNA sequence
Length = 877
Score = 58.0 bits (29), Expect = 8e-007
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 821 tgttgttggcgtactcgtagaggcggccgcggctggagaagacga 865
|||||||||||||||| ||||| ||||| ||||| ||||||||||
Sbjct: 807 tgttgttggcgtactcatagagacggccacggctagagaagacga 851
Score = 40.1 bits (20), Expect = 0.20
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 526 atctcccttttttgcatatagtcaacttcagc 557
||||||||||| |||||||| |||| ||||||
Sbjct: 515 atctcccttttctgcatatactcaatttcagc 546
>gb|DN484153.1|DN484153 PTRI27.5pR Populus cDNA, trichocarpa shoot library Populus
trichocarpa cDNA clone PTRI27 5', mRNA sequence
Length = 381
Score = 58.0 bits (29), Expect = 8e-007
Identities = 83/101 (82%)
Strand = Plus / Minus
Query: 787 gccttcttgtacctctcaatggtggacttcacactgttgttggcgtactcgtagaggcgg 846
||||| |||||||| ||||| || || || ||||| ||||| | |||||| || |||||
Sbjct: 363 gcctttttgtacctttcaattgtagatttgacactattgttagagtactcataaaggcgt 304
Query: 847 ccgcggctggagaagacgacgagcgcgacctcggcgtcgca 887
|| |||||||||||||||| ||| || ||||| || |||||
Sbjct: 303 ccacggctggagaagacgatgagtgcaacctcagcatcgca 263
>gb|DN491294.1|DN491294 UM83TF04.3pR Populus female catkins cDNA library Populus
trichocarpa cDNA clone UM83TF04 3', mRNA sequence
Length = 813
Score = 58.0 bits (29), Expect = 8e-007
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 821 tgttgttggcgtactcgtagaggcggccgcggctggagaagacga 865
|||||||||||||||| ||||| ||||| ||||| ||||||||||
Sbjct: 578 tgttgttggcgtactcatagagacggccacggctagagaagacga 622
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 961 gtgttctcgatgcgcttgatctcgatcttgcctct 995
||||||||||| | ||||||||||||||| |||||
Sbjct: 717 gtgttctcgatcctcttgatctcgatctttcctct 751
>gb|DN501305.1|DN501305 UM83TF04.5pR Populus female catkins cDNA library Populus
trichocarpa cDNA clone UM83TF04 5', mRNA sequence
Length = 860
Score = 58.0 bits (29), Expect = 8e-007
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 821 tgttgttggcgtactcgtagaggcggccgcggctggagaagacga 865
|||||||||||||||| ||||| ||||| ||||| ||||||||||
Sbjct: 269 tgttgttggcgtactcatagagacggccacggctagagaagacga 225
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 961 gtgttctcgatgcgcttgatctcgatcttgcctct 995
||||||||||| | ||||||||||||||| |||||
Sbjct: 129 gtgttctcgatcctcttgatctcgatctttcctct 95
>gb|DT509633.1|DT509633 WS02424.BR_E10 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02424_E10 5', mRNA sequence
Length = 905
Score = 58.0 bits (29), Expect = 8e-007
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 821 tgttgttggcgtactcgtagaggcggccgcggctggagaagacga 865
|||||||||||||||| ||||| ||||| ||||| ||||||||||
Sbjct: 245 tgttgttggcgtactcatagagacggccacggctagagaagacga 201
Score = 46.1 bits (23), Expect = 0.003
Identities = 53/63 (84%)
Strand = Plus / Minus
Query: 933 cttgcagaaggtcacctgccggctcgtcgtgttctcgatgcgcttgatctcgatcttgcc 992
||||||||| || ||||| || |||| ||||||||||| | ||||||||| ||||| ||
Sbjct: 133 cttgcagaaagtaacctgacgattcgtagtgttctcgatcctcttgatctcaatctttcc 74
Query: 993 tct 995
|||
Sbjct: 73 tct 71
Score = 40.1 bits (20), Expect = 0.20
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 526 atctcccttttttgcatatagtcaacttcagc 557
||||||||||| |||||||| |||| ||||||
Sbjct: 537 atctcccttttctgcatatactcaatttcagc 506
>gb|DT510612.1|DT510612 WS02427.BR_A17 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02427_A17 5', mRNA sequence
Length = 920
Score = 58.0 bits (29), Expect = 8e-007
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 821 tgttgttggcgtactcgtagaggcggccgcggctggagaagacga 865
|||||||||||||||| ||||| ||||| ||||| ||||||||||
Sbjct: 249 tgttgttggcgtactcatagagacggccacggctagagaagacga 205
Score = 46.1 bits (23), Expect = 0.003
Identities = 53/63 (84%)
Strand = Plus / Minus
Query: 933 cttgcagaaggtcacctgccggctcgtcgtgttctcgatgcgcttgatctcgatcttgcc 992
||||||||| || ||||| || |||| ||||||||||| | ||||||||| ||||| ||
Sbjct: 137 cttgcagaaagtaacctgacgattcgtagtgttctcgatcctcttgatctcaatctttcc 78
Query: 993 tct 995
|||
Sbjct: 77 tct 75
Score = 40.1 bits (20), Expect = 0.20
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 526 atctcccttttttgcatatagtcaacttcagc 557
||||||||||| |||||||| |||| ||||||
Sbjct: 541 atctcccttttctgcatatactcaatttcagc 510
>gb|DT517651.1|DT517651 WS02434.B21_O16 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02434_O16 3', mRNA sequence
Length = 924
Score = 58.0 bits (29), Expect = 8e-007
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 821 tgttgttggcgtactcgtagaggcggccgcggctggagaagacga 865
|||||||||||||||| ||||| ||||| ||||| ||||||||||
Sbjct: 810 tgttgttggcgtactcatagagacggccacggctagagaagacga 854
Score = 40.1 bits (20), Expect = 0.20
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 526 atctcccttttttgcatatagtcaacttcagc 557
||||||||||| |||||||| |||| ||||||
Sbjct: 518 atctcccttttctgcatatactcaatttcagc 549
>gb|DT520688.1|DT520688 WS02448.B21_E04 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02448_E04 3', mRNA sequence
Length = 897
Score = 58.0 bits (29), Expect = 8e-007
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 821 tgttgttggcgtactcgtagaggcggccgcggctggagaagacga 865
|||||||||||||||| ||||| ||||| ||||| ||||||||||
Sbjct: 808 tgttgttggcgtactcatagagacggccacggctagagaagacga 852
Score = 40.1 bits (20), Expect = 0.20
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 526 atctcccttttttgcatatagtcaacttcagc 557
||||||||||| |||||||| |||| ||||||
Sbjct: 516 atctcccttttctgcatatactcaatttcagc 547
>gb|CN519626.1|CN519626 GQ0104.B3_J10 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0104_J10 5', mRNA sequence
Length = 751
Score = 42.1 bits (21), Expect = 0.050
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 928 cggcgcttgcagaaggtcacctgcc 952
||||||||||||||||| |||||||
Sbjct: 135 cggcgcttgcagaaggtaacctgcc 111
>gb|DT515243.1|DT515243 WS02427.B21_A17 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02427_A17 3', mRNA sequence
Length = 835
Score = 42.1 bits (21), Expect = 0.050
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 821 tgttgttggcgtactcgtagaggcggccgcggc 853
|||||||||||||||| ||||| ||||| ||||
Sbjct: 803 tgttgttggcgtactcatagagacggccacggc 835
Score = 40.1 bits (20), Expect = 0.20
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 526 atctcccttttttgcatatagtcaacttcagc 557
||||||||||| |||||||| |||| ||||||
Sbjct: 511 atctcccttttctgcatatactcaatttcagc 542
>gb|AF052571.1|AF052571 Populus balsamifera subsp. trichocarpa AGAMOUS homolog (PTAG2) gene,
complete cds
Length = 10007
Score = 42.1 bits (21), Expect = 0.050
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 831 gtactcgtagaggcggccgcggctggagaagacgacgagcgcgacctcggcgtcgca 887
|||||| || ||||| || |||||||||||||||| ||| || ||||| || |||||
Sbjct: 3142 gtactcataaaggcgtccacggctggagaagacgatgagtgcaacctcagcatcgca 3086
>gb|AY359607.1| Populus yunnanensis sex male AGAMOUS (AG2) gene, partial cds
Length = 227
Score = 42.1 bits (21), Expect = 0.050
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 831 gtactcgtagaggcggccgcggctggagaagacgacgagcgcgacctcggcgtcgca 887
|||||| || ||||| || |||||||||||||||| ||| || ||||| || |||||
Sbjct: 216 gtactcataaaggcgtccacggctggagaagacgatgagtgcaacctcagcatcgca 160
>gb|AY359609.1| Populus tomentosa sex female AGAMOUS (AG2) gene, partial cds
Length = 227
Score = 42.1 bits (21), Expect = 0.050
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 831 gtactcgtagaggcggccgcggctggagaagacgacgagcgcgacctcggcgtcgca 887
|||||| || ||||| || |||||||||||||||| ||| || ||||| || |||||
Sbjct: 216 gtactcataaaggcgtccacggctggagaagacgatgagtgcaacctcagcatcgca 160
>gb|CX178021.1|CX178021 B01_45-88_03.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 693
Score = 40.1 bits (20), Expect = 0.20
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 526 atctcccttttttgcatatagtcaacttcagc 557
||||||||||| |||||||| |||| ||||||
Sbjct: 191 atctcccttttctgcatatactcaatttcagc 160
>gb|DT514239.1|DT514239 WS02424.B21_E10 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02424_E10 3', mRNA sequence
Length = 774
Score = 40.1 bits (20), Expect = 0.20
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 526 atctcccttttttgcatatagtcaacttcagc 557
||||||||||| |||||||| |||| ||||||
Sbjct: 513 atctcccttttctgcatatactcaatttcagc 544
>gb|DT518766.1|DT518766 WS02439.B21_D01 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02439_D01 3', mRNA sequence
Length = 300
Score = 40.1 bits (20), Expect = 0.20
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 526 atctcccttttttgcatatagtcaacttcagc 557
||||||||||| |||||||| |||| ||||||
Sbjct: 81 atctcccttttctgcatatactcaatttcagc 112
>gb|AY359611.1| Populus tomentosa sex male AGAMOUS (AG2) gene, partial cds
Length = 227
Score = 40.1 bits (20), Expect = 0.20
Identities = 41/48 (85%)
Strand = Plus / Minus
Query: 831 gtactcgtagaggcggccgcggctggagaagacgacgagcgcgacctc 878
|||||| || ||||| || |||||||||||||||| ||| || |||||
Sbjct: 216 gtactcataaaggcgtccacggctggagaagacgatgagtgcaacctc 169
>gb|AY359612.1| Populus tomentosa sex male AGAMOUS (AG1) gene, partial cds
Length = 227
Score = 40.1 bits (20), Expect = 0.20
Identities = 41/48 (85%)
Strand = Plus / Minus
Query: 831 gtactcgtagaggcggccgcggctggagaagacgacgagcgcgacctc 878
|||||| || ||||| || |||||||||||||||| ||| || |||||
Sbjct: 216 gtactcataaaggcgtccacggctggagaagacgatgagtgcaacctc 169
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 104,541
Number of Sequences: 369679
Number of extensions: 104541
Number of successful extensions: 27263
Number of sequences better than 0.5: 22
Number of HSP's better than 0.5 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27192
Number of HSP's gapped (non-prelim): 71
length of query: 1245
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1226
effective length of database: 196,384,763
effective search space: 240767719438
effective search space used: 240767719438
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)