BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3802552.2.1
(252 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA927347.1|CA927347 MTU6CR.P7.H05 Aspen root cDNA Librar... 48 2e-004
gb|CA927812.1|CA927812 MTU6TR.P13.C03 Aspen root cDNA Libra... 48 2e-004
gb|CA927883.1|CA927883 MTU6TR.P14.B01 Aspen root cDNA Libra... 48 2e-004
gb|CA927954.1|CA927954 MTU6TR.P15.A04 Aspen root cDNA Libra... 48 2e-004
gb|CA928074.1|CA928074 MTU6TR.P16.D12 Aspen root cDNA Libra... 48 2e-004
gb|CA928329.1|CA928329 MTU6TR.P1.D01 Aspen root cDNA Librar... 48 2e-004
gb|CA928464.1|CA928464 MTU6TR.P3.A07 Aspen root cDNA Librar... 48 2e-004
gb|CA928628.1|CA928628 MTU6TR.P4.H12 Aspen root cDNA Librar... 48 2e-004
gb|CA928942.1|CA928942 MTU6TR.P8.F07 Aspen root cDNA Librar... 48 2e-004
gb|CF119833.1|CF119833 MTU10CS.P6.H04 Aspen stem cDNA Libra... 48 2e-004
gb|CA928566.1|CA928566 MTU6TR.P4.B06 Aspen root cDNA Librar... 46 6e-004
gb|CN523612.1|CN523612 GQ015M06.T3_B08 GQ015 Populus tricho... 44 0.002
gb|CA927734.1|CA927734 MTU6TR.P12.D03 Aspen root cDNA Libra... 40 0.038
gb|DV463129.1|DV463129 MTUNUL1.P12.B03 NUL Populus fremonti... 40 0.038
>gb|CA927347.1|CA927347 MTU6CR.P7.H05 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 696
Score = 48.1 bits (24), Expect = 2e-004
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 19 caggggtggttcgcgggcggcacggtgctgcgcgtggccaaggacctcgcggagaacaac 78
||||| || ||||| || ||||||||||| ||| | || ||||||||||| |||||||||
Sbjct: 95 cagggttgtttcgctggtggcacggtgctccgcctcgctaaggacctcgccgagaacaac 154
>gb|CA927812.1|CA927812 MTU6TR.P13.C03 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 755
Score = 48.1 bits (24), Expect = 2e-004
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 19 caggggtggttcgcgggcggcacggtgctgcgcgtggccaaggacctcgcggagaacaac 78
||||| || ||||| || ||||||||||| ||| | || ||||||||||| |||||||||
Sbjct: 243 cagggttgtttcgctggtggcacggtgctccgcctcgctaaggacctcgccgagaacaac 302
>gb|CA927883.1|CA927883 MTU6TR.P14.B01 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 680
Score = 48.1 bits (24), Expect = 2e-004
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 19 caggggtggttcgcgggcggcacggtgctgcgcgtggccaaggacctcgcggagaacaac 78
||||| || ||||| || ||||||||||| ||| | || ||||||||||| |||||||||
Sbjct: 277 cagggttgtttcgctggtggcacggtgctccgcctcgctaaggacctcgccgagaacaac 336
>gb|CA927954.1|CA927954 MTU6TR.P15.A04 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 641
Score = 48.1 bits (24), Expect = 2e-004
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 19 caggggtggttcgcgggcggcacggtgctgcgcgtggccaaggacctcgcggagaacaac 78
||||| || ||||| || ||||||||||| ||| | || ||||||||||| |||||||||
Sbjct: 277 cagggttgtttcgctggtggcacggtgctccgcctcgctaaggacctcgccgagaacaac 336
>gb|CA928074.1|CA928074 MTU6TR.P16.D12 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 638
Score = 48.1 bits (24), Expect = 2e-004
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 19 caggggtggttcgcgggcggcacggtgctgcgcgtggccaaggacctcgcggagaacaac 78
||||| || ||||| || ||||||||||| ||| | || ||||||||||| |||||||||
Sbjct: 277 cagggttgtttcgctggtggcacggtgctccgcctcgctaaggacctcgccgagaacaac 336
>gb|CA928329.1|CA928329 MTU6TR.P1.D01 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 691
Score = 48.1 bits (24), Expect = 2e-004
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 19 caggggtggttcgcgggcggcacggtgctgcgcgtggccaaggacctcgcggagaacaac 78
||||| || ||||| || ||||||||||| ||| | || ||||||||||| |||||||||
Sbjct: 269 cagggttgtttcgctggtggcacggtgctccgcctcgctaaggacctcgccgagaacaac 328
>gb|CA928464.1|CA928464 MTU6TR.P3.A07 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 546
Score = 48.1 bits (24), Expect = 2e-004
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 19 caggggtggttcgcgggcggcacggtgctgcgcgtggccaaggacctcgcggagaacaac 78
||||| || ||||| || ||||||||||| ||| | || ||||||||||| |||||||||
Sbjct: 277 cagggttgtttcgctggtggcacggtgctccgcctcgctaaggacctcgccgagaacaac 336
>gb|CA928628.1|CA928628 MTU6TR.P4.H12 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 696
Score = 48.1 bits (24), Expect = 2e-004
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 19 caggggtggttcgcgggcggcacggtgctgcgcgtggccaaggacctcgcggagaacaac 78
||||| || ||||| || ||||||||||| ||| | || ||||||||||| |||||||||
Sbjct: 515 cagggttgtttcgctggtggcacggtgctccgcctcgctaaggacctcgccgagaacaac 456
>gb|CA928942.1|CA928942 MTU6TR.P8.F07 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 684
Score = 48.1 bits (24), Expect = 2e-004
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 19 caggggtggttcgcgggcggcacggtgctgcgcgtggccaaggacctcgcggagaacaac 78
||||| || ||||| || ||||||||||| ||| | || ||||||||||| |||||||||
Sbjct: 277 cagggttgtttcgctggtggcacggtgctccgcctcgctaaggacctcgccgagaacaac 336
>gb|CF119833.1|CF119833 MTU10CS.P6.H04 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 607
Score = 48.1 bits (24), Expect = 2e-004
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 19 caggggtggttcgcgggcggcacggtgctgcgcgtggccaaggacctcgcggagaacaac 78
||||| || ||||| || ||||||||||| ||| | || ||||||||||| |||||||||
Sbjct: 516 cagggttgtttcgctggtggcacggtgctccgcctcgctaaggacctcgccgagaacaac 457
>gb|CA928566.1|CA928566 MTU6TR.P4.B06 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 534
Score = 46.1 bits (23), Expect = 6e-004
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 28 ttcgcgggcggcacggtgctgcgcgtggccaaggacctcgcggagaacaac 78
||||| || ||||||||||| ||| | || ||||||||||| |||||||||
Sbjct: 506 ttcgctggtggcacggtgctccgcctcgctaaggacctcgccgagaacaac 456
>gb|CN523612.1|CN523612 GQ015M06.T3_B08 GQ015 Populus trichocarpa x Populus deltoides cDNA
clone GQ015M06_B08 5', mRNA sequence
Length = 732
Score = 44.1 bits (22), Expect = 0.002
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 28 ttcgcgggcggcacggtgctgcgcgtggccaaggacctcgcggagaacaa 77
||||| || ||||||||||| ||| | || ||||||||||| ||||||||
Sbjct: 309 ttcgctggtggcacggtgctccgccttgctaaggacctcgccgagaacaa 358
>gb|CA927734.1|CA927734 MTU6TR.P12.D03 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 651
Score = 40.1 bits (20), Expect = 0.038
Identities = 50/60 (83%)
Strand = Plus / Plus
Query: 19 caggggtggttcgcgggcggcacggtgctgcgcgtggccaaggacctcgcggagaacaac 78
||||| || ||||| || ||||||||||| ||| | || |||| |||||| |||||||||
Sbjct: 269 cagggctgtttcgctggtggcacggtgctccgcctcgctaagggcctcgccgagaacaac 328
>gb|DV463129.1|DV463129 MTUNUL1.P12.B03 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 824
Score = 40.1 bits (20), Expect = 0.038
Identities = 65/80 (81%)
Strand = Plus / Plus
Query: 28 ttcgcgggcggcacggtgctgcgcgtggccaaggacctcgcggagaacaaccgcggcgcg 87
||||| || ||||||||||| || | || ||||||||||| ||||||||| |||||
Sbjct: 627 ttcgccggtggcacggtgctccgtcttgctaaggacctcgccgagaacaacaaaggcgct 686
Query: 88 cgggtgctggtggtgtgctc 107
|| ||||| || ||||||||
Sbjct: 687 cgtgtgctcgtcgtgtgctc 706
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,064
Number of Sequences: 369679
Number of extensions: 10064
Number of successful extensions: 2662
Number of sequences better than 0.5: 14
Number of HSP's better than 0.5 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2648
Number of HSP's gapped (non-prelim): 14
length of query: 252
length of database: 203,408,664
effective HSP length: 18
effective length of query: 234
effective length of database: 196,754,442
effective search space: 46040539428
effective search space used: 46040539428
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)