BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3802485.2.1
(1118 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU882336.1|BU882336 UM75TF08 Populus flower cDNA library... 60 2e-007
gb|CX169203.1|CX169203 A10_69-115_02.ab1 leaf inoculated wi... 60 2e-007
gb|BI070287.1|BI070287 C017P25U Populus strain T89 leaves P... 54 1e-005
gb|BU824862.1|BU824862 UK100G03 Populus apical shoot cDNA l... 54 1e-005
gb|BU830604.1|BU830604 T010F10 Populus apical shoot cDNA li... 54 1e-005
gb|CF231742.1|CF231742 PtaC0025B9B0903 Poplar cDNA library ... 54 1e-005
gb|CK100280.1|CK100280 C017P25.5pR Populus strain T89 leave... 54 1e-005
gb|DT471984.1|DT471984 WS0122.BR_L10 PT-GT-FL-A-3 Populus t... 54 1e-005
gb|CK101166.1|CK101166 F026P50.5pR Populus flower cDNA libr... 42 0.045
gb|CK096395.1|CK096395 UB12CPE11.3pR Populus active cambium... 40 0.18
gb|AJ778536.1|AJ778536 AJ778536 Populus euphratica cambium ... 40 0.18
gb|AJ778566.1|AJ778566 AJ778566 Populus euphratica cambium ... 40 0.18
>gb|BU882336.1|BU882336 UM75TF08 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 587
Score = 60.0 bits (30), Expect = 2e-007
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 578 ttgcagttgcttgaaagaattttgtctgtcaccaaagctcgttctatattattgaatggt 637
||||||||| |||| ||||| ||||| | ||||||||||| | || ||||| ||||||
Sbjct: 70 ttgcagttggttgagagaatcttgtcatcccccaaagctcgtacaattttattaaatggt 129
Query: 638 gctgttagaaagggagaacgcttagt 663
||||||| |||||| || ||||||||
Sbjct: 130 gctgttaaaaagggtgagcgcttagt 155
>gb|CX169203.1|CX169203 A10_69-115_02.ab1 leaf inoculated with Marssonia pathogen of
Populus deltoides Populus deltoides cDNA, mRNA sequence
Length = 690
Score = 60.0 bits (30), Expect = 2e-007
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 578 ttgcagttgcttgaaagaattttgtctgtcaccaaagctcgttctatattattgaatggt 637
||||||||| |||| ||||| ||||| | ||||||||||| | || ||||| ||||||
Sbjct: 49 ttgcagttggttgagagaatcttgtcatcccccaaagctcgtacaattttattaaatggt 108
Query: 638 gctgttagaaagggagaacgcttagt 663
||||||| |||||| || ||||||||
Sbjct: 109 gctgttaaaaagggtgagcgcttagt 134
>gb|BI070287.1|BI070287 C017P25U Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 390
Score = 54.0 bits (27), Expect = 1e-005
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 609 ccaaagctcgttctatattattgaatggtgctgttagaaagggagaacgcttagt 663
||||||||||| | || ||||| ||||||||||||| |||||| || ||||||||
Sbjct: 90 ccaaagctcgtacaattttattaaatggtgctgttaaaaagggtgagcgcttagt 144
>gb|BU824862.1|BU824862 UK100G03 Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 577
Score = 54.0 bits (27), Expect = 1e-005
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 609 ccaaagctcgttctatattattgaatggtgctgttagaaagggagaacgcttagt 663
||||||||||| | || ||||| ||||||||||||| |||||| || ||||||||
Sbjct: 129 ccaaagctcgtacaattttattaaatggtgctgttaaaaagggtgagcgcttagt 183
>gb|BU830604.1|BU830604 T010F10 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 764
Score = 54.0 bits (27), Expect = 1e-005
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 609 ccaaagctcgttctatattattgaatggtgctgttagaaagggagaacgcttagt 663
||||||||||| | || ||||| ||||||||||||| |||||| || ||||||||
Sbjct: 36 ccaaagctcgtacaattttattaaatggtgctgttaaaaagggtgagcgcttagt 90
>gb|CF231742.1|CF231742 PtaC0025B9B0903 Poplar cDNA library from cambial zone Populus alba
x Populus tremula cDNA 5', mRNA sequence
Length = 693
Score = 54.0 bits (27), Expect = 1e-005
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 609 ccaaagctcgttctatattattgaatggtgctgttagaaagggagaacgcttagt 663
||||||||||| | || ||||| ||||||||||||| |||||| || ||||||||
Sbjct: 73 ccaaagctcgtacaattttattaaatggtgctgttaaaaagggtgagcgcttagt 127
>gb|CK100280.1|CK100280 C017P25.5pR Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA clone C017P25 5', mRNA sequence
Length = 561
Score = 54.0 bits (27), Expect = 1e-005
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 609 ccaaagctcgttctatattattgaatggtgctgttagaaagggagaacgcttagt 663
||||||||||| | || ||||| ||||||||||||| |||||| || ||||||||
Sbjct: 101 ccaaagctcgtacaattttattaaatggtgctgttaaaaagggtgagcgcttagt 155
>gb|DT471984.1|DT471984 WS0122.BR_L10 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0122_L10 5', mRNA sequence
Length = 584
Score = 54.0 bits (27), Expect = 1e-005
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 609 ccaaagctcgttctatattattgaatggtgctgttagaaagggagaacgcttagt 663
||||||||||| | || ||||| ||||||||||||| |||||| || ||||||||
Sbjct: 459 ccaaagctcgtacaattttattaaatggtgctgttaaaaagggtgagcgcttagt 513
>gb|CK101166.1|CK101166 F026P50.5pR Populus flower cDNA library Populus trichocarpa cDNA
clone F026P50 5', mRNA sequence
Length = 628
Score = 42.1 bits (21), Expect = 0.045
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 632 aatggtgctgttagaaagggagaacgctt 660
|||||||||||||||||||| || |||||
Sbjct: 282 aatggtgctgttagaaagggggagcgctt 310
>gb|CK096395.1|CK096395 UB12CPE11.3pR Populus active cambium cDNA library Populus tremula
cDNA clone UB12CPE11 3', mRNA sequence
Length = 651
Score = 40.1 bits (20), Expect = 0.18
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 125 tcaacagtgtctaagatggttgacatcccact 156
|||||||||||||| || |||| |||||||||
Sbjct: 541 tcaacagtgtctaaaatcgttgccatcccact 572
>gb|AJ778536.1|AJ778536 AJ778536 Populus euphratica cambium 3-6 months Populus euphratica
cDNA clone P0000600002C08F1, mRNA sequence
Length = 708
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 667 ccctgtttcatttgacttgt 686
||||||||||||||||||||
Sbjct: 457 ccctgtttcatttgacttgt 476
>gb|AJ778566.1|AJ778566 AJ778566 Populus euphratica cambium 3-6 months Populus euphratica
cDNA clone P0000600002G07F1, mRNA sequence
Length = 754
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 667 ccctgtttcatttgacttgt 686
||||||||||||||||||||
Sbjct: 537 ccctgtttcatttgacttgt 556
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 146,417
Number of Sequences: 369679
Number of extensions: 146417
Number of successful extensions: 37763
Number of sequences better than 0.5: 12
Number of HSP's better than 0.5 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37748
Number of HSP's gapped (non-prelim): 15
length of query: 1118
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1099
effective length of database: 196,384,763
effective search space: 215826854537
effective search space used: 215826854537
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)