BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3748394.2.2
         (3527 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CA924040.1|CA924040  MTU7CL.P1.A07 Aspen leaf cDNA Librar...    50   6e-004
gb|DN500621.1|DN500621  UL69F06.5pR Populus cold stressed le...    50   6e-004
gb|BI072708.1|BI072708  C084P86U Populus strain T89 leaves P...    46   0.009
gb|CK100777.1|CK100777  C084P86.5pR Populus strain T89 leave...    46   0.009
gb|CN523960.1|CN523960  GQ015M02.T3_A07 GQ015 Populus tricho...    42   0.14 

>gb|CA924040.1|CA924040 MTU7CL.P1.A07 Aspen leaf cDNA Library Populus tremuloides cDNA, mRNA
            sequence
          Length = 700

 Score = 50.1 bits (25), Expect = 6e-004
 Identities = 79/97 (81%)
 Strand = Plus / Minus

                                                                        
Query: 1595 caagaccagacccgaagaagaacatcactaccctcgtcaaagcgtttggagagtgtcgtc 1654
            |||||||||| || || ||||||||||| ||  | |||| ||| |||||||| ||||| |
Sbjct: 376  caagaccagatcccaaaaagaacatcacaactttggtcacagcatttggagaatgtcggc 317

                                                 
Query: 1655 cactcagggaacttgcaaaccttactctgatcatggg 1691
            || | || || ||||| ||||||||||| || |||||
Sbjct: 316  cattgagagagcttgctaaccttactctaattatggg 280




 Score = 44.1 bits (22), Expect = 0.036
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 1753 aagctgattgacaagtatgatctgta 1778
            ||||| ||||||||||||||||||||
Sbjct: 218  aagcttattgacaagtatgatctgta 193



>gb|DN500621.1|DN500621 UL69F06.5pR Populus cold stressed leaves cDNA library Populus tremula
            x Populus tremuloides cDNA clone UL69F06 5', mRNA
            sequence
          Length = 789

 Score = 50.1 bits (25), Expect = 6e-004
 Identities = 79/97 (81%)
 Strand = Plus / Plus

                                                                        
Query: 1595 caagaccagacccgaagaagaacatcactaccctcgtcaaagcgtttggagagtgtcgtc 1654
            |||||||||| || || ||||||||||| ||  | |||| ||| |||||||| ||||| |
Sbjct: 101  caagaccagatcccaaaaagaacatcacaactttggtcacagcatttggagaatgtcggc 160

                                                 
Query: 1655 cactcagggaacttgcaaaccttactctgatcatggg 1691
            || | || || ||||| ||||||||||| || |||||
Sbjct: 161  cattgagagagcttgctaaccttactctaattatggg 197




 Score = 44.1 bits (22), Expect = 0.036
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 1753 aagctgattgacaagtatgatctgta 1778
            ||||| ||||||||||||||||||||
Sbjct: 259  aagcttattgacaagtatgatctgta 284



>gb|BI072708.1|BI072708 C084P86U Populus strain T89 leaves Populus tremula x Populus
            tremuloides cDNA, mRNA sequence
          Length = 191

 Score = 46.1 bits (23), Expect = 0.009
 Identities = 58/70 (82%)
 Strand = Plus / Minus

                                                                        
Query: 1118 tgaatgtgccaatggtgctcactggccactcacttgggaggaacaagctggaacaactgc 1177
            ||||||||||||||||  | || || ||||| || |||||||||||| | || || ||||
Sbjct: 87   tgaatgtgccaatggttttaacagggcactctctggggaggaacaagtttgagcanctgc 28

                      
Query: 1178 tgaagcaagg 1187
            | ||||||||
Sbjct: 27   tcaagcaagg 18



>gb|CK100777.1|CK100777 C084P86.5pR Populus strain T89 leaves Populus tremula x Populus
            tremuloides cDNA clone C084P86 5', mRNA sequence
          Length = 437

 Score = 46.1 bits (23), Expect = 0.009
 Identities = 108/135 (80%), Gaps = 1/135 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1053 gccttacgtgatacatgggcactatgccgatgctggagatgttgctgctctcctttctgg 1112
            |||||| ||||| || || ||||| || |||||||| || || || || ||| | |||||
Sbjct: 209  gccttatgtgattcacggccactacgctgatgctggcgaagtggcagcactcttgtctgg 150

                                                                        
Query: 1113 tgcgctgaatgtgccaatggtgctcactggccactcacttgggaggaacaagctggaaca 1172
             ||  ||||||||||||||||  | || || ||||| || |||||||||||| | || ||
Sbjct: 149  ggccttgaatgtgccaatggtttt-acagggcactctctggggaggaacaagtttgagca 91

                           
Query: 1173 actgctgaagcaagg 1187
            |||||| ||||||||
Sbjct: 90   actgctcaagcaagg 76



>gb|CN523960.1|CN523960 GQ015M02.T3_A07 GQ015 Populus trichocarpa x Populus deltoides cDNA
           clone GQ015M02_A07 5', mRNA sequence
          Length = 768

 Score = 42.1 bits (21), Expect = 0.14
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 415 aagaagcagctggagctggag 435
           |||||||||||||||||||||
Sbjct: 672 aagaagcagctggagctggag 652



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 370,198
Number of Sequences: 369679
Number of extensions: 370198
Number of successful extensions: 96770
Number of sequences better than  0.5: 5
Number of HSP's better than  0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 96761
Number of HSP's gapped (non-prelim): 9
length of query: 3527
length of database: 203,408,664
effective HSP length: 20
effective length of query: 3507
effective length of database: 196,015,084
effective search space: 687424899588
effective search space used: 687424899588
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)