BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3713139.2.1
(487 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU877511.1|BU877511 V035D08 Populus flower cDNA library ... 50 8e-005
gb|CV234476.1|CV234476 WS01215.B21.1_B04 PT-GT-FL-A-3 Popul... 50 8e-005
gb|CV271206.1|CV271206 WS0154.B21_B06 PTxN-IB-A-6 Populus t... 50 8e-005
gb|DT491048.1|DT491048 WS02546.C21.1_K16 PT-MB-N-A-15 Popul... 50 8e-005
gb|DT508597.1|DT508597 WS02421.BR_G17 PTxD-ICC-N-A-14 Popul... 50 8e-005
gb|DT513205.1|DT513205 WS02421.B21_G17 PTxD-ICC-N-A-14 Popu... 50 8e-005
gb|AI166760.1|AI166760 xylem.est.560 Poplar xylem Lambda ZA... 42 0.019
gb|BI130554.1|BI130554 G107P25Y Populus cambium cDNA librar... 42 0.019
gb|BU816357.1|BU816357 N063F12 Populus bark cDNA library Po... 42 0.019
gb|CA932889.1|CA932889 MTU5CS.P18.G09 Aspen stem cDNA Libra... 42 0.019
gb|CA932963.1|CA932963 MTU5CS.P1.G02 Aspen stem cDNA Librar... 42 0.019
gb|CA933142.1|CA933142 MTU5CS.P4.A06 Aspen stem cDNA Librar... 42 0.019
gb|CA933190.1|CA933190 MTU5CS.P4.F06 Aspen stem cDNA Librar... 42 0.019
gb|CA933696.1|CA933696 MTU3TS.P11.B12 Aspen stem cDNA Libra... 42 0.019
gb|CB239777.1|CB239777 RSH16E08 two-month-old roots from cl... 42 0.019
gb|CF119975.1|CF119975 MTU10CS.P8.G01 Aspen stem cDNA Libra... 42 0.019
gb|CF229213.1|CF229213 PtaXM0022F3F0311 Poplar cDNA library... 42 0.019
gb|CF234142.1|CF234142 PtaJXO3A3A0301 Poplar cDNA library f... 42 0.019
gb|AJ776963.1|AJ776963 AJ776963 Populus euphratica root 3-6... 42 0.019
gb|CV273760.1|CV273760 WS01712.B21_B07 PTxD-NR-A-8 Populus ... 42 0.019
gb|CX657939.1|CX657939 PO01007C04 Poplar SC cDNA library Po... 42 0.019
gb|CX659483.1|CX659483 PO01031C01 Poplar SC cDNA library Po... 42 0.019
gb|CX659495.1|CX659495 PO01031D01 Poplar SC cDNA library Po... 42 0.019
gb|BP934051.1|BP934051 BP934051 full-length enriched poplar... 42 0.019
gb|CA933713.1|CA933713 MTU3TS.P11.D10 Aspen stem cDNA Libra... 40 0.076
>gb|BU877511.1|BU877511 V035D08 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 400
Score = 50.1 bits (25), Expect = 8e-005
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 408 cttgtagtcgagcgtcctgaattcgtcccactc 440
|||||||||||| ||||||||||| ||||||||
Sbjct: 373 cttgtagtcgagagtcctgaattcatcccactc 341
>gb|CV234476.1|CV234476 WS01215.B21.1_B04 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01215_B04 3', mRNA sequence
Length = 865
Score = 50.1 bits (25), Expect = 8e-005
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 408 cttgtagtcgagcgtcctgaattcgtcccactc 440
|||||||||||| ||||||||||| ||||||||
Sbjct: 443 cttgtagtcgagagtcctgaattcatcccactc 475
>gb|CV271206.1|CV271206 WS0154.B21_B06 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0154_B06 3', mRNA sequence
Length = 708
Score = 50.1 bits (25), Expect = 8e-005
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 408 cttgtagtcgagcgtcctgaattcgtcccactc 440
|||||||||||| ||||||||||| ||||||||
Sbjct: 573 cttgtagtcgagagtcctgaattcatcccactc 605
>gb|DT491048.1|DT491048 WS02546.C21.1_K16 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02546_K16 3', mRNA sequence
Length = 710
Score = 50.1 bits (25), Expect = 8e-005
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 408 cttgtagtcgagcgtcctgaattcgtcccactc 440
|||||||||||| ||||||||||| ||||||||
Sbjct: 530 cttgtagtcgagagtcctgaattcatcccactc 562
>gb|DT508597.1|DT508597 WS02421.BR_G17 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02421_G17 5', mRNA sequence
Length = 865
Score = 50.1 bits (25), Expect = 8e-005
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 408 cttgtagtcgagcgtcctgaattcgtcccactc 440
|||||||||||| ||||||||||| ||||||||
Sbjct: 455 cttgtagtcgagagtcctgaattcatcccactc 423
>gb|DT513205.1|DT513205 WS02421.B21_G17 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02421_G17 3', mRNA sequence
Length = 865
Score = 50.1 bits (25), Expect = 8e-005
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 408 cttgtagtcgagcgtcctgaattcgtcccactc 440
|||||||||||| ||||||||||| ||||||||
Sbjct: 411 cttgtagtcgagagtcctgaattcatcccactc 443
>gb|AI166760.1|AI166760 xylem.est.560 Poplar xylem Lambda ZAPII library Populus trichocarpa
cDNA 5', mRNA sequence
Length = 647
Score = 42.1 bits (21), Expect = 0.019
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 408 cttgtagtcgagcgtcctgaattcgtcccactc 440
|||||| ||||| ||||||||||| ||||||||
Sbjct: 374 cttgtaatcgagagtcctgaattcatcccactc 342
>gb|BI130554.1|BI130554 G107P25Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 505
Score = 42.1 bits (21), Expect = 0.019
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 408 cttgtagtcgagcgtcctgaattcgtcccactc 440
|||||| ||||| ||||||||||| ||||||||
Sbjct: 423 cttgtaatcgagagtcctgaattcatcccactc 391
>gb|BU816357.1|BU816357 N063F12 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 595
Score = 42.1 bits (21), Expect = 0.019
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 408 cttgtagtcgagcgtcctgaattcgtcccactc 440
|||||| ||||| ||||||||||| ||||||||
Sbjct: 174 cttgtaatcgagagtcctgaattcatcccactc 142
>gb|CA932889.1|CA932889 MTU5CS.P18.G09 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 607
Score = 42.1 bits (21), Expect = 0.019
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 408 cttgtagtcgagcgtcctgaattcgtcccactc 440
|||||| ||||| ||||||||||| ||||||||
Sbjct: 197 cttgtaatcgagagtcctgaattcatcccactc 229
>gb|CA932963.1|CA932963 MTU5CS.P1.G02 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 606
Score = 42.1 bits (21), Expect = 0.019
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 408 cttgtagtcgagcgtcctgaattcgtcccactc 440
|||||| ||||| ||||||||||| ||||||||
Sbjct: 197 cttgtaatcgagagtcctgaattcatcccactc 229
>gb|CA933142.1|CA933142 MTU5CS.P4.A06 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 607
Score = 42.1 bits (21), Expect = 0.019
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 408 cttgtagtcgagcgtcctgaattcgtcccactc 440
|||||| ||||| ||||||||||| ||||||||
Sbjct: 411 cttgtaatcgagagtcctgaattcatcccactc 379
>gb|CA933190.1|CA933190 MTU5CS.P4.F06 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 607
Score = 42.1 bits (21), Expect = 0.019
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 408 cttgtagtcgagcgtcctgaattcgtcccactc 440
|||||| ||||| ||||||||||| ||||||||
Sbjct: 411 cttgtaatcgagagtcctgaattcatcccactc 379
>gb|CA933696.1|CA933696 MTU3TS.P11.B12 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 472
Score = 42.1 bits (21), Expect = 0.019
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 408 cttgtagtcgagcgtcctgaattcgtcccactc 440
|||||| ||||| ||||||||||| ||||||||
Sbjct: 274 cttgtaatcgagagtcctgaattcatcccactc 242
>gb|CB239777.1|CB239777 RSH16E08 two-month-old roots from clone 'Beaupre' grown for 19 days
under restricted irrigation Populus trichocarpa x
Populus deltoides cDNA 5', mRNA sequence
Length = 515
Score = 42.1 bits (21), Expect = 0.019
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 408 cttgtagtcgagcgtcctgaattcgtcccactc 440
|||||| ||||| ||||||||||| ||||||||
Sbjct: 87 cttgtaatcgagagtcctgaattcatcccactc 55
>gb|CF119975.1|CF119975 MTU10CS.P8.G01 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 593
Score = 42.1 bits (21), Expect = 0.019
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 408 cttgtagtcgagcgtcctgaattcgtcccactc 440
|||||| ||||| ||||||||||| ||||||||
Sbjct: 197 cttgtaatcgagagtcctgaattcatcccactc 229
>gb|CF229213.1|CF229213 PtaXM0022F3F0311 Poplar cDNA library from mature xylem Populus alba
x Populus tremula cDNA 5', mRNA sequence
Length = 701
Score = 42.1 bits (21), Expect = 0.019
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 408 cttgtagtcgagcgtcctgaattcgtcccactc 440
|||||| ||||| ||||||||||| ||||||||
Sbjct: 234 cttgtaatcgagagtcctgaattcatcccactc 202
>gb|CF234142.1|CF234142 PtaJXO3A3A0301 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 567
Score = 42.1 bits (21), Expect = 0.019
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 408 cttgtagtcgagcgtcctgaattcgtcccactc 440
|||||| ||||| ||||||||||| ||||||||
Sbjct: 272 cttgtaatcgagagtcctgaattcatcccactc 240
>gb|AJ776963.1|AJ776963 AJ776963 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400021B01F1, mRNA sequence
Length = 516
Score = 42.1 bits (21), Expect = 0.019
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 408 cttgtagtcgagcgtcctgaattcgtcccactc 440
|||||| ||||| ||||||||||| ||||||||
Sbjct: 50 cttgtaatcgagagtcctgaattcatcccactc 18
>gb|CV273760.1|CV273760 WS01712.B21_B07 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS01712_B07 3', mRNA sequence
Length = 807
Score = 42.1 bits (21), Expect = 0.019
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 408 cttgtagtcgagcgtcctgaattcgtcccactc 440
|||||| ||||| ||||||||||| ||||||||
Sbjct: 346 cttgtaatcgagagtcctgaattcatcccactc 314
>gb|CX657939.1|CX657939 PO01007C04 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01007C04 5', mRNA sequence
Length = 620
Score = 42.1 bits (21), Expect = 0.019
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 408 cttgtagtcgagcgtcctgaattcgtcccactc 440
|||||| ||||| ||||||||||| ||||||||
Sbjct: 299 cttgtaatcgagagtcctgaattcatcccactc 267
>gb|CX659483.1|CX659483 PO01031C01 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01031C01 5', mRNA sequence
Length = 521
Score = 42.1 bits (21), Expect = 0.019
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 408 cttgtagtcgagcgtcctgaattcgtcccactc 440
|||||| ||||| ||||||||||| ||||||||
Sbjct: 49 cttgtaatcgagagtcctgaattcatcccactc 17
>gb|CX659495.1|CX659495 PO01031D01 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01031D01 5', mRNA sequence
Length = 521
Score = 42.1 bits (21), Expect = 0.019
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 408 cttgtagtcgagcgtcctgaattcgtcccactc 440
|||||| ||||| ||||||||||| ||||||||
Sbjct: 49 cttgtaatcgagagtcctgaattcatcccactc 17
>gb|BP934051.1|BP934051 BP934051 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-059_N06.r 3', mRNA sequence
Length = 551
Score = 42.1 bits (21), Expect = 0.019
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 408 cttgtagtcgagcgtcctgaattcgtcccactc 440
|||||| ||||| ||||||||||| ||||||||
Sbjct: 468 cttgtaatcgagagtcctgaattcatcccactc 500
>gb|CA933713.1|CA933713 MTU3TS.P11.D10 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 310
Score = 40.1 bits (20), Expect = 0.076
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 260 acgcgacggctggcatgtccttgagcca 287
|||||| ||| |||||||||||||||||
Sbjct: 52 acgcgatggcaggcatgtccttgagcca 25
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 38,420
Number of Sequences: 369679
Number of extensions: 38420
Number of successful extensions: 11019
Number of sequences better than 0.5: 27
Number of HSP's better than 0.5 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10970
Number of HSP's gapped (non-prelim): 49
length of query: 487
length of database: 203,408,664
effective HSP length: 19
effective length of query: 468
effective length of database: 196,384,763
effective search space: 91908069084
effective search space used: 91908069084
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)