BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3696569.2.1
(1022 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI068323.1|BI068323 C020P28U Populus strain T89 leaves P... 56 3e-006
gb|BI070667.1|BI070667 C041P74U Populus strain T89 leaves P... 56 3e-006
gb|CA925535.1|CA925535 MTU7TL.P2.G08 Aspen leaf cDNA Librar... 56 3e-006
gb|CA931041.1|CA931041 MTU2TA.P1.C01 Aspen apex cDNA Librar... 56 3e-006
gb|CA931089.1|CA931089 MTU2TA.P1.H04 Aspen apex cDNA Librar... 56 3e-006
gb|CA932095.1|CA932095 MTU4TA.P26.G11 Aspen apex cDNA Libra... 56 3e-006
gb|CA934619.1|CA934619 MTU5TS.P21.D05 Aspen stem cDNA Libra... 56 3e-006
gb|CF119349.1|CF119349 MTU10CS.P16.G01 Aspen stem cDNA Libr... 56 3e-006
gb|CF119894.1|CF119894 MTU10CS.P7.F07 Aspen stem cDNA Libra... 56 3e-006
gb|AY435100.1| Populus tremula x Populus tremuloides alpha-... 56 3e-006
gb|BU867573.1|BU867573 M101G12 Populus flower cDNA library ... 54 1e-005
gb|BU868621.1|BU868621 M118B09 Populus flower cDNA library ... 54 1e-005
gb|CK088219.1|CK088219 A044P14.3pR Hybrid aspen plasmid lib... 54 1e-005
gb|CK109527.1|CK109527 N017H10 Populus bark cDNA library Po... 54 1e-005
gb|CN519990.1|CN519990 GQ0108.B3_K15 GQ010 Populus trichoca... 54 1e-005
gb|CN520597.1|CN520597 GQ0105.B3_E19 GQ010 Populus trichoca... 54 1e-005
gb|CN523732.1|CN523732 GQ015M10.T3_E03 GQ015 Populus tricho... 54 1e-005
gb|CV240405.1|CV240405 WS0251.B21_E17 PT-MB-N-A-15 Populus ... 54 1e-005
gb|CV272399.1|CV272399 WS0157.B21_I20 PTxN-IB-A-6 Populus t... 54 1e-005
gb|CX180849.1|CX180849 D06_45-117_08.ab1 leaf inoculated wi... 54 1e-005
gb|DT490247.1|DT490247 WS02544.B21_H02 PT-MB-N-A-15 Populus... 54 1e-005
gb|DT492462.1|DT492462 WS02550.C21_M18 PT-MB-N-A-15 Populus... 54 1e-005
gb|DT507035.1|DT507035 WS02417.BR_C22 PTxD-ICC-N-A-14 Popul... 54 1e-005
gb|CA933376.1|CA933376 MTU5CS.P7.B09 Aspen stem cDNA Librar... 50 2e-004
gb|CB240458.1|CB240458 PopSC00443 Poplar SC cDNA library Po... 50 2e-004
gb|CX658121.1|CX658121 PO01009F10 Poplar SC cDNA library Po... 50 2e-004
gb|DT520342.1|DT520342 WS02447.B21_E17 PTxD-ICC-N-A-14 Popu... 50 2e-004
gb|DV463768.1|DV463768 MTUNUL1.P2.B10 NUL Populus fremontii... 50 2e-004
gb|BU827896.1|BU827896 K011P11P Populus apical shoot cDNA l... 48 7e-004
gb|CA930772.1|CA930772 MTU2TA.P10.A06 Aspen apex cDNA Libra... 48 7e-004
gb|CA931232.1|CA931232 MTU2TA.P4.D07 Aspen apex cDNA Librar... 48 7e-004
gb|CA934741.1|CA934741 MTU5TS.P23.B05 Aspen stem cDNA Libra... 48 7e-004
gb|AJ775049.1|AJ775049 AJ775049 Populus euphratica shoot 3-... 48 7e-004
gb|BI072028.1|BI072028 C068P05U Populus strain T89 leaves P... 46 0.003
gb|BU867976.1|BU867976 M106F07 Populus flower cDNA library ... 46 0.003
gb|CA932314.1|CA932314 MTU5CS.P11.D03 Aspen stem cDNA Libra... 46 0.003
gb|CA932791.1|CA932791 MTU5CS.P17.D11 Aspen stem cDNA Libra... 46 0.003
gb|CA932826.1|CA932826 MTU5CS.P18.A02 Aspen stem cDNA Libra... 46 0.003
gb|CB184967.1|CB184967 PopSC00101 Poplar SC cDNA library Po... 46 0.003
gb|CF119515.1|CF119515 MTU10CS.P2.H02 Aspen stem cDNA Libra... 46 0.003
gb|CF229000.1|CF229000 PtaXM0020A10A1002 Poplar cDNA librar... 46 0.003
gb|CN520784.1|CN520784 GQ0108.B3_L20 GQ010 Populus trichoca... 46 0.003
gb|CN523530.1|CN523530 GQ015M11.T3_D06 GQ015 Populus tricho... 46 0.003
gb|DT490390.1|DT490390 WS02544.B21_N10 PT-MB-N-A-15 Populus... 46 0.003
gb|BU815416.1|BU815416 N041D08 Populus bark cDNA library Po... 44 0.010
gb|BU824007.1|BU824007 UB59CPB10 Populus tremula cambium cD... 44 0.010
gb|BU893810.1|BU893810 P083A04 Populus petioles cDNA librar... 44 0.010
gb|BU893884.1|BU893884 P084A04 Populus petioles cDNA librar... 44 0.010
gb|CF119781.1|CF119781 MTU10CS.P6.C03 Aspen stem cDNA Libra... 44 0.010
gb|AI161578.1|AI161578 A002P74U Hybrid aspen plasmid librar... 42 0.041
gb|AI165287.1|AI165287 A080P42U Hybrid aspen plasmid librar... 42 0.041
gb|BI071873.1|BI071873 C065P28U Populus strain T89 leaves P... 42 0.041
gb|BI071981.1|BI071981 C067P17U Populus strain T89 leaves P... 42 0.041
gb|BI127499.1|BI127499 G061P54Y Populus cambium cDNA librar... 42 0.041
gb|BI130398.1|BI130398 G105P12Y Populus cambium cDNA librar... 42 0.041
gb|BI131229.1|BI131229 G117P34Y Populus cambium cDNA librar... 42 0.041
gb|BU815417.1|BU815417 N041D09 Populus bark cDNA library Po... 42 0.041
gb|BU815493.1|BU815493 N042D11 Populus bark cDNA library Po... 42 0.041
gb|BU836300.1|BU836300 T085A03 Populus apical shoot cDNA li... 42 0.041
gb|BU837829.1|BU837829 T106B06 Populus apical shoot cDNA li... 42 0.041
gb|CA923726.1|CA923726 MTU7CL.P14.B11 Aspen leaf cDNA Libra... 42 0.041
gb|CA930506.1|CA930506 MTU4CA.P23.D05 Aspen apex cDNA Libra... 42 0.041
gb|CA933853.1|CA933853 MTU3TS.P13.E07 Aspen stem cDNA Libra... 42 0.041
gb|CA826407.1|CA826407 R77F11 two-month-old roots from clon... 42 0.041
gb|CK089266.1|CK089266 B007P05.3pR Hybrid aspen plasmid lib... 42 0.041
gb|CK103443.1|CK103443 G117P34.5pR Populus tension wood cDN... 42 0.041
gb|CN523977.1|CN523977 GQ015M07.T3_G12 GQ015 Populus tricho... 42 0.041
gb|CV130860.1|CV130860 X9SP06f07 Populus stem seasonal libr... 42 0.041
gb|CV228721.1|CV228721 WS01911.B21_A12 PT-DX-N-A-10 Populus... 42 0.041
gb|CV259380.1|CV259380 WS02011.B21_D08 PTxN-IB-N-A-11 Popul... 42 0.041
gb|CV265899.1|CV265899 WS02028.B21_I23 PTxN-IB-N-A-11 Popul... 42 0.041
gb|CV272777.1|CV272777 WS0158.B21_K22 PTxN-IB-A-6 Populus t... 42 0.041
gb|BP926887.1|BP926887 BP926887 full-length enriched poplar... 42 0.041
gb|DT493606.1|DT493606 WS0111.BR_N24 PT-P-FL-A-2 Populus tr... 42 0.041
gb|DT498875.1|DT498875 WS0116.BR_J18 PT-P-FL-A-2 Populus tr... 42 0.041
gb|DT498988.1|DT498988 WS0116.BR_O20 PT-P-FL-A-2 Populus tr... 42 0.041
gb|DT500134.1|DT500134 PX0011.BR_F03 PT-X-FL-A-1 Populus tr... 42 0.041
gb|DT500250.1|DT500250 PX0011.BR_L17 PT-X-FL-A-1 Populus tr... 42 0.041
gb|DT500322.1|DT500322 PX0015.BR_B14 PT-X-FL-A-1 Populus tr... 42 0.041
gb|DT500905.1|DT500905 PX0019.BR_M05 PT-X-FL-A-1 Populus tr... 42 0.041
gb|DT521517.1|DT521517 WS02034.B21_I03 PTxN-IB-N-A-11 Popul... 42 0.041
gb|DT526688.1|DT526688 WS02048.C21_L07 PTxN-IB-N-A-11 Popul... 42 0.041
gb|AY435099.1| Populus tremula x Populus tremuloides alpha-... 42 0.041
>gb|BI068323.1|BI068323 C020P28U Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 392
Score = 56.0 bits (28), Expect = 3e-006
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 420 accatcaacgggcactcctacttcaacctggt 451
||||||||||| ||||||||||||||||||||
Sbjct: 5 accatcaacggccactcctacttcaacctggt 36
Score = 48.1 bits (24), Expect = 7e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 516 gggtggcagcccatgtcccggaactggggccagaactggcagagcaac 563
|||||||| ||||||| | ||||||||||| |||||||||||||||
Sbjct: 101 gggtggcaagccatgtcaagaaactggggccaaaactggcagagcaac 148
>gb|BI070667.1|BI070667 C041P74U Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 384
Score = 56.0 bits (28), Expect = 3e-006
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 420 accatcaacgggcactcctacttcaacctggt 451
||||||||||| ||||||||||||||||||||
Sbjct: 6 accatcaacggccactcctacttcaacctggt 37
Score = 48.1 bits (24), Expect = 7e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 516 gggtggcagcccatgtcccggaactggggccagaactggcagagcaac 563
|||||||| ||||||| | ||||||||||| |||||||||||||||
Sbjct: 102 gggtggcaagccatgtcaagaaactggggccaaaactggcagagcaac 149
>gb|CA925535.1|CA925535 MTU7TL.P2.G08 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 546
Score = 56.0 bits (28), Expect = 3e-006
Identities = 115/144 (79%)
Strand = Plus / Minus
Query: 420 accatcaacgggcactcctacttcaacctggtgctggtgaccaacgtggcgggcgccggc 479
||||||||||| |||||||||||||||||||| ||| | ||||| || | || |||||
Sbjct: 492 accatcaacggccactcctacttcaacctggtcctgatcaccaatgttggtggtgccgga 433
Query: 480 gacgtgcgctccgtctccatccggggctcccgcacggggtggcagcccatgtcccggaac 539
|| || | ||| || || ||| | ||||| || |||||||| ||||||| | |||
Sbjct: 432 gatgttcactcagtttcaatcagaggctcgaaaacagggtggcaagccatgtcaagaaac 373
Query: 540 tggggccagaactggcagagcaac 563
|||||||| |||||||||||||||
Sbjct: 372 tggggccaaaactggcagagcaac 349
>gb|CA931041.1|CA931041 MTU2TA.P1.C01 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 560
Score = 56.0 bits (28), Expect = 3e-006
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 420 accatcaacgggcactcctacttcaacctggt 451
||||||||||| ||||||||||||||||||||
Sbjct: 495 accatcaacggccactcctacttcaacctggt 464
Score = 48.1 bits (24), Expect = 7e-004
Identities = 43/48 (89%), Gaps = 1/48 (2%)
Strand = Plus / Minus
Query: 516 gggtggcagcccatgtcccggaactggggccagaactggcagagcaac 563
||||||||||| ||||| | ||||||||||| |||||||||||||||
Sbjct: 399 gggtggcagcc-atgtcaagaaactggggccaaaactggcagagcaac 353
>gb|CA931089.1|CA931089 MTU2TA.P1.H04 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 555
Score = 56.0 bits (28), Expect = 3e-006
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 420 accatcaacgggcactcctacttcaacctggt 451
||||||||||| ||||||||||||||||||||
Sbjct: 492 accatcaacggccactcctacttcaacctggt 461
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 537 aactggggccagaactggcagagcaac 563
||||||||||| |||||||||||||||
Sbjct: 376 aactggggccaaaactggcagagcaac 350
>gb|CA932095.1|CA932095 MTU4TA.P26.G11 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 506
Score = 56.0 bits (28), Expect = 3e-006
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 420 accatcaacgggcactcctacttcaacctggt 451
||||||||||| ||||||||||||||||||||
Sbjct: 66 accatcaacggccactcctacttcaacctggt 97
Score = 48.1 bits (24), Expect = 7e-004
Identities = 43/48 (89%), Gaps = 1/48 (2%)
Strand = Plus / Plus
Query: 516 gggtggcagcccatgtcccggaactggggccagaactggcagagcaac 563
||||||||||| ||||| | ||||||||||| |||||||||||||||
Sbjct: 162 gggtggcagcc-atgtcaagaaactggggccaaaactggcagagcaac 208
>gb|CA934619.1|CA934619 MTU5TS.P21.D05 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 496
Score = 56.0 bits (28), Expect = 3e-006
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 420 accatcaacgggcactcctacttcaacctggt 451
||||||||||| ||||||||||||||||||||
Sbjct: 66 accatcaacggccactcctacttcaacctggt 97
Score = 48.1 bits (24), Expect = 7e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 516 gggtggcagcccatgtcccggaactggggccagaactggcagagcaac 563
|||||||| ||||||| | ||||||||||| |||||||||||||||
Sbjct: 162 gggtggcaagccatgtcaagaaactggggccaaaactggcagagcaac 209
>gb|CF119349.1|CF119349 MTU10CS.P16.G01 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 782
Score = 56.0 bits (28), Expect = 3e-006
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 420 accatcaacgggcactcctacttcaacctggt 451
||||||||||| ||||||||||||||||||||
Sbjct: 196 accatcaacggccactcctacttcaacctggt 227
Score = 48.1 bits (24), Expect = 7e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 516 gggtggcagcccatgtcccggaactggggccagaactggcagagcaac 563
|||||||| ||||||| | ||||||||||| |||||||||||||||
Sbjct: 292 gggtggcaagccatgtcaagaaactggggccaaaactggcagagcaac 339
>gb|CF119894.1|CF119894 MTU10CS.P7.F07 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 617
Score = 56.0 bits (28), Expect = 3e-006
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 420 accatcaacgggcactcctacttcaacctggt 451
||||||||||| ||||||||||||||||||||
Sbjct: 196 accatcaacggccactcctacttcaacctggt 227
Score = 48.1 bits (24), Expect = 7e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 516 gggtggcagcccatgtcccggaactggggccagaactggcagagcaac 563
|||||||| ||||||| | ||||||||||| |||||||||||||||
Sbjct: 292 gggtggcaagccatgtcaagaaactggggccaaaactggcagagcaac 339
>gb|AY435100.1| Populus tremula x Populus tremuloides alpha-expansin 2 (Exp2) mRNA,
complete cds
Length = 1084
Score = 56.0 bits (28), Expect = 3e-006
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 420 accatcaacgggcactcctacttcaacctggt 451
||||||||||| ||||||||||||||||||||
Sbjct: 542 accatcaacggccactcctacttcaacctggt 573
Score = 48.1 bits (24), Expect = 7e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 516 gggtggcagcccatgtcccggaactggggccagaactggcagagcaac 563
|||||||| ||||||| | ||||||||||| |||||||||||||||
Sbjct: 638 gggtggcaagccatgtcaagaaactggggccaaaactggcagagcaac 685
>gb|BU867573.1|BU867573 M101G12 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 673
Score = 54.0 bits (27), Expect = 1e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 438 tacttcaacctggtgctggtgaccaacgtggcggg 472
|||||||||||||| |||||||||||||||||||
Sbjct: 542 tacttcaacctggttttggtgaccaacgtggcggg 576
>gb|BU868621.1|BU868621 M118B09 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 746
Score = 54.0 bits (27), Expect = 1e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 438 tacttcaacctggtgctggtgaccaacgtggcggg 472
|||||||||||||| |||||||||||||||||||
Sbjct: 224 tacttcaacctggttttggtgaccaacgtggcggg 258
>gb|CK088219.1|CK088219 A044P14.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A044P14 3', mRNA sequence
Length = 731
Score = 54.0 bits (27), Expect = 1e-005
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 421 ccatcaacgggcactcctacttcaacctggt 451
|||||||||| ||||||||||||||||||||
Sbjct: 561 ccatcaacggccactcctacttcaacctggt 531
Score = 48.1 bits (24), Expect = 7e-004
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 516 gggtggcagcccatgtcccggaactggggccagaactggcagagcaac 563
|||||||| ||||||| | ||||||||||| |||||||||||||||
Sbjct: 466 gggtggcaagccatgtcaagaaactggggccaaaactggcagagcaac 419
>gb|CK109527.1|CK109527 N017H10 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA clone N017H10 5', mRNA sequence
Length = 423
Score = 54.0 bits (27), Expect = 1e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 438 tacttcaacctggtgctggtgaccaacgtggcggg 472
|||||||||||||| |||||||||||||||||||
Sbjct: 137 tacttcaacctggttttggtgaccaacgtggcggg 171
>gb|CN519990.1|CN519990 GQ0108.B3_K15 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0108_K15 5', mRNA sequence
Length = 777
Score = 54.0 bits (27), Expect = 1e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 438 tacttcaacctggtgctggtgaccaacgtggcggg 472
|||||||||||||| |||||||||||||||||||
Sbjct: 622 tacttcaacctggttttggtgaccaacgtggcggg 588
>gb|CN520597.1|CN520597 GQ0105.B3_E19 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0105_E19 5', mRNA sequence
Length = 670
Score = 54.0 bits (27), Expect = 1e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 438 tacttcaacctggtgctggtgaccaacgtggcggg 472
|||||||||||||| |||||||||||||||||||
Sbjct: 540 tacttcaacctggttttggtgaccaacgtggcggg 574
>gb|CN523732.1|CN523732 GQ015M10.T3_E03 GQ015 Populus trichocarpa x Populus deltoides cDNA
clone GQ015M10_E03 5', mRNA sequence
Length = 737
Score = 54.0 bits (27), Expect = 1e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 438 tacttcaacctggtgctggtgaccaacgtggcggg 472
|||||||||||||| |||||||||||||||||||
Sbjct: 273 tacttcaacctggttttggtgaccaacgtggcggg 307
>gb|CV240405.1|CV240405 WS0251.B21_E17 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0251_E17 3', mRNA sequence
Length = 885
Score = 54.0 bits (27), Expect = 1e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 438 tacttcaacctggtgctggtgaccaacgtggcggg 472
|||||||||||||| |||||||||||||||||||
Sbjct: 654 tacttcaacctggttttggtgaccaacgtggcggg 620
>gb|CV272399.1|CV272399 WS0157.B21_I20 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0157_I20 3', mRNA sequence
Length = 683
Score = 54.0 bits (27), Expect = 1e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 438 tacttcaacctggtgctggtgaccaacgtggcggg 472
|||||||||||||| |||||||||||||||||||
Sbjct: 655 tacttcaacctggttttggtgaccaacgtggcggg 621
>gb|CX180849.1|CX180849 D06_45-117_08.ab1 leaf inoculated with Marssonia pathogen of
Populus euramericana Populus x canadensis cDNA, mRNA
sequence
Length = 695
Score = 54.0 bits (27), Expect = 1e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 438 tacttcaacctggtgctggtgaccaacgtggcggg 472
|||||||||||||| |||||||||||||||||||
Sbjct: 578 tacttcaacctggttttggtgaccaacgtggcggg 612
>gb|DT490247.1|DT490247 WS02544.B21_H02 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02544_H02 3', mRNA sequence
Length = 743
Score = 54.0 bits (27), Expect = 1e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 438 tacttcaacctggtgctggtgaccaacgtggcggg 472
|||||||||||||| |||||||||||||||||||
Sbjct: 55 tacttcaacctggttttggtgaccaacgtggcggg 89
>gb|DT492462.1|DT492462 WS02550.C21_M18 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02550_M18 3', mRNA sequence
Length = 718
Score = 54.0 bits (27), Expect = 1e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 438 tacttcaacctggtgctggtgaccaacgtggcggg 472
|||||||||||||| |||||||||||||||||||
Sbjct: 644 tacttcaacctggttttggtgaccaacgtggcggg 610
>gb|DT507035.1|DT507035 WS02417.BR_C22 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02417_C22 5', mRNA sequence
Length = 494
Score = 54.0 bits (27), Expect = 1e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 438 tacttcaacctggtgctggtgaccaacgtggcggg 472
|||||||||||||| |||||||||||||||||||
Sbjct: 42 tacttcaacctggttttggtgaccaacgtggcggg 76
>gb|CA933376.1|CA933376 MTU5CS.P7.B09 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 605
Score = 50.1 bits (25), Expect = 2e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 420 accatcaacgggcactcctacttcaacctggt 451
||||||||||| ||||||||||||||| ||||
Sbjct: 570 accatcaacggccactcctacttcaacntggt 539
Score = 48.1 bits (24), Expect = 7e-004
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 516 gggtggcagcccatgtcccggaactggggccagaactggcagagcaac 563
|||||||| ||||||| | ||||||||||| |||||||||||||||
Sbjct: 474 gggtggcaagccatgtcaagaaactggggccaaaactggcagagcaac 427
>gb|CB240458.1|CB240458 PopSC00443 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PopSC00443, mRNA sequence
Length = 476
Score = 50.1 bits (25), Expect = 2e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 535 ggaactggggccagaactggcagagcaactcgtacct 571
|||||||||||||||||||||| ||||| || |||||
Sbjct: 96 ggaactggggccagaactggcaaagcaattcttacct 132
>gb|CX658121.1|CX658121 PO01009F10 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01009F10 5', mRNA sequence
Length = 677
Score = 50.1 bits (25), Expect = 2e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 535 ggaactggggccagaactggcagagcaactcgtacct 571
|||||||||||||||||||||| ||||| || |||||
Sbjct: 364 ggaactggggccagaactggcaaagcaattcttacct 400
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 223 ccatcaccgtcacggccaccaacttctgccc 253
||||||||||||| ||||| |||||||||||
Sbjct: 52 ccatcaccgtcaccgccactaacttctgccc 82
>gb|DT520342.1|DT520342 WS02447.B21_E17 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02447_E17 3', mRNA sequence
Length = 876
Score = 50.1 bits (25), Expect = 2e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 535 ggaactggggccagaactggcagagcaactcgtacct 571
|||||||||||||||||||||| ||||| || |||||
Sbjct: 520 ggaactggggccagaactggcaaagcaattcttacct 484
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 223 ccatcaccgtcacggccaccaacttctgccc 253
||||||||||||| ||||| |||||||||||
Sbjct: 833 ccatcaccgtcacagccactaacttctgccc 803
>gb|DV463768.1|DV463768 MTUNUL1.P2.B10 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 862
Score = 50.1 bits (25), Expect = 2e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 535 ggaactggggccagaactggcagagcaactcgtacct 571
|||||||||||||||||||||| ||||| || |||||
Sbjct: 650 ggaactggggccagaactggcaaagcaattcttacct 686
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 223 ccatcaccgtcacggccaccaacttctgccc 253
||||||||||||| ||||| |||||||||||
Sbjct: 338 ccatcaccgtcacagccactaacttctgccc 368
>gb|BU827896.1|BU827896 K011P11P Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 571
Score = 48.1 bits (24), Expect = 7e-004
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 417 ttcaccatcaacgggcactcctacttcaacctggtgctggtgaccaacgtgg 468
||||| |||||||| |||||||||||||| || || ||| | ||||||||||
Sbjct: 487 ttcacaatcaacggtcactcctacttcaatctagtcctgataaccaacgtgg 538
>gb|CA930772.1|CA930772 MTU2TA.P10.A06 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 516
Score = 48.1 bits (24), Expect = 7e-004
Identities = 43/48 (89%), Gaps = 1/48 (2%)
Strand = Plus / Plus
Query: 516 gggtggcagcccatgtcccggaactggggccagaactggcagagcaac 563
||||||||||| ||||| | ||||||||||| |||||||||||||||
Sbjct: 162 gggtggcagcc-atgtcaagaaactggggccaaaactggcagagcaac 208
Score = 48.1 bits (24), Expect = 7e-004
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 424 tcaacgggcactcctacttcaacctggt 451
||||||| ||||||||||||||||||||
Sbjct: 70 tcaacggccactcctacttcaacctggt 97
>gb|CA931232.1|CA931232 MTU2TA.P4.D07 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 471
Score = 48.1 bits (24), Expect = 7e-004
Identities = 43/48 (89%), Gaps = 1/48 (2%)
Strand = Plus / Minus
Query: 516 gggtggcagcccatgtcccggaactggggccagaactggcagagcaac 563
||||||||||| ||||| | ||||||||||| |||||||||||||||
Sbjct: 394 gggtggcagcc-atgtcaagaaactggggccaaaactggcagagcaac 348
>gb|CA934741.1|CA934741 MTU5TS.P23.B05 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 546
Score = 48.1 bits (24), Expect = 7e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 420 accatcaacgggcactcctacttcaacctggt 451
|||||||||| ||||||||||||||||||||
Sbjct: 495 accatcaacgaccactcctacttcaacctggt 464
Score = 48.1 bits (24), Expect = 7e-004
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 516 gggtggcagcccatgtcccggaactggggccagaactggcagagcaac 563
|||||||| ||||||| | ||||||||||| |||||||||||||||
Sbjct: 399 gggtggcaagccatgtcaagaaactggggccaaaactggcagagcaac 352
>gb|AJ775049.1|AJ775049 AJ775049 Populus euphratica shoot 3-6 months Populus euphratica
cDNA clone P0000300027C03F1, mRNA sequence
Length = 578
Score = 48.1 bits (24), Expect = 7e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 420 accatcaacgggcactcctacttcaacctggt 451
||||||||||| ||||||||||||||| ||||
Sbjct: 534 accatcaacggtcactcctacttcaacttggt 565
>gb|BI072028.1|BI072028 C068P05U Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 437
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 537 aactggggccagaactggcagagcaactcgtacct 571
||||||||||| ||||||||||| ||||| |||||
Sbjct: 170 aactggggccaaaactggcagagtaactcttacct 204
>gb|BU867976.1|BU867976 M106F07 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 624
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 438 tacttcaacctggtgctggtgaccaacgtggcggg 472
||||||||||||| |||||||||||||||||||
Sbjct: 564 tacttcaacctggctttggtgaccaacgtggcggg 598
>gb|CA932314.1|CA932314 MTU5CS.P11.D03 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 559
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 537 aactggggccagaactggcagagcaactcgtacct 571
||||||||||| ||||||||||| ||||| |||||
Sbjct: 412 aactggggccaaaactggcagagtaactcttacct 446
>gb|CA932791.1|CA932791 MTU5CS.P17.D11 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 559
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 537 aactggggccagaactggcagagcaactcgtacct 571
||||||||||| ||||||||||| ||||| |||||
Sbjct: 148 aactggggccaaaactggcagagtaactcttacct 114
>gb|CA932826.1|CA932826 MTU5CS.P18.A02 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 690
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 415 ggttcaccatcaacgggcactcctacttcaa 445
||||||| |||||||| ||||||||||||||
Sbjct: 491 ggttcacaatcaacggtcactcctacttcaa 521
Score = 42.1 bits (21), Expect = 0.041
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 535 ggaactggggccagaactggcagagcaac 563
|||||||||| ||||| ||||||||||||
Sbjct: 611 ggaactgggggcagaattggcagagcaac 639
>gb|CB184967.1|CB184967 PopSC00101 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PopSC00101, mRNA sequence
Length = 421
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 223 ccatcaccgtcacggccaccaacttctgccc 253
||||||||||||| ||||| |||||||||||
Sbjct: 300 ccatcaccgtcaccgccactaacttctgccc 330
>gb|CF119515.1|CF119515 MTU10CS.P2.H02 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 225
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 415 ggttcaccatcaacgggcactcctacttcaa 445
||||||| |||||||| ||||||||||||||
Sbjct: 24 ggttcacaatcaacggtcactcctacttcaa 54
>gb|CF229000.1|CF229000 PtaXM0020A10A1002 Poplar cDNA library from mature xylem Populus
alba x Populus tremula cDNA 5', mRNA sequence
Length = 667
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 438 tacttcaacctggtgctggtgaccaacgtggcggg 472
||||||||||| || |||||||||||||||||||
Sbjct: 570 tacttcaacctcgttttggtgaccaacgtggcggg 604
>gb|CN520784.1|CN520784 GQ0108.B3_L20 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0108_L20 5', mRNA sequence
Length = 821
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 537 aactggggccagaactggcagagcaactcgtacct 571
||||||||||| ||||||||||| ||||| |||||
Sbjct: 559 aactggggccaaaactggcagagtaactcttacct 593
Score = 44.1 bits (22), Expect = 0.010
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 408 ggcatccggttcaccatcaacgggcactcctacttcaa 445
||||| |||||||||||||| || ||||| ||||||||
Sbjct: 430 ggcattcggttcaccatcaatggccactcatacttcaa 467
>gb|CN523530.1|CN523530 GQ015M11.T3_D06 GQ015 Populus trichocarpa x Populus deltoides cDNA
clone GQ015M11_D06 5', mRNA sequence
Length = 779
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 537 aactggggccagaactggcagagcaactcgtacct 571
||||||||||| ||||||||||| ||||| |||||
Sbjct: 554 aactggggccaaaactggcagagtaactcttacct 588
Score = 44.1 bits (22), Expect = 0.010
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 408 ggcatccggttcaccatcaacgggcactcctacttcaa 445
||||| |||||||||||||| || ||||| ||||||||
Sbjct: 425 ggcattcggttcaccatcaatggccactcatacttcaa 462
>gb|DT490390.1|DT490390 WS02544.B21_N10 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02544_N10 3', mRNA sequence
Length = 866
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 537 aactggggccagaactggcagagcaactcgtacct 571
||||||||||| ||||||||||| ||||| |||||
Sbjct: 350 aactggggccaaaactggcagagtaactcttacct 316
Score = 44.1 bits (22), Expect = 0.010
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 408 ggcatccggttcaccatcaacgggcactcctacttcaa 445
||||| |||||||||||||| || ||||| ||||||||
Sbjct: 479 ggcattcggttcaccatcaatggccactcatacttcaa 442
>gb|BU815416.1|BU815416 N041D08 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 620
Score = 44.1 bits (22), Expect = 0.010
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 417 ttcaccatcaacgggcactcctacttcaacctggtgctggtgaccaacgt 466
||||| |||||||| |||||||||||||| || || ||| | ||||||||
Sbjct: 129 ttcacaatcaacggtcactcctacttcaatctagtcctgataaccaacgt 178
>gb|BU824007.1|BU824007 UB59CPB10 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 611
Score = 44.1 bits (22), Expect = 0.010
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 417 ttcaccatcaacgggcactcctacttcaacctggtgctggtgaccaacgt 466
||||| |||||||| |||||||||||||| || || ||| | ||||||||
Sbjct: 534 ttcacaatcaacggtcactcctacttcaatctagtcctgattaccaacgt 583
>gb|BU893810.1|BU893810 P083A04 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 557
Score = 44.1 bits (22), Expect = 0.010
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 417 ttcaccatcaacgggcactcctacttcaacctggtgctggtgaccaacgt 466
||||| |||||||| |||||||||||||| || || ||| | ||||||||
Sbjct: 425 ttcacaatcaacggtcactcctacttcaatctagtcctgataaccaacgt 474
>gb|BU893884.1|BU893884 P084A04 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 656
Score = 44.1 bits (22), Expect = 0.010
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 417 ttcaccatcaacgggcactcctacttcaacctggtgctggtgaccaacgt 466
||||| |||||||| |||||||||||||| || || ||| | ||||||||
Sbjct: 425 ttcacaatcaacggtcactcctacttcaatctagtcctgataaccaacgt 474
>gb|CF119781.1|CF119781 MTU10CS.P6.C03 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 612
Score = 44.1 bits (22), Expect = 0.010
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 417 ttcaccatcaacgggcactcctacttcaacctggtgctggtgaccaacgt 466
||||| |||||||| |||||||||||||| || || ||| | ||||||||
Sbjct: 299 ttcacaatcaacggtcactcctacttcaatctagtcctgataaccaacgt 348
>gb|AI161578.1|AI161578 A002P74U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 577
Score = 42.1 bits (21), Expect = 0.041
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 537 aactggggccagaactggcag 557
|||||||||||||||||||||
Sbjct: 417 aactggggccagaactggcag 437
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 70,907
Number of Sequences: 369679
Number of extensions: 70907
Number of successful extensions: 20994
Number of sequences better than 0.5: 83
Number of HSP's better than 0.5 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20796
Number of HSP's gapped (non-prelim): 196
length of query: 1022
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1003
effective length of database: 196,384,763
effective search space: 196973917289
effective search space used: 196973917289
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)