BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3670912.2.1
(844 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI131326.1|BI131326 G119P27Y Populus cambium cDNA librar... 40 0.13
gb|BI132312.1|BI132312 G134P76Y Populus cambium cDNA librar... 40 0.13
gb|BU897133.1|BU897133 X051H08 Populus wood cDNA library Po... 40 0.13
gb|CF234810.1|CF234810 PtaJXT0015D6D0608 Poplar cDNA librar... 40 0.13
gb|CK093403.1|CK093403 G119P27.3pR Populus tension wood cDN... 40 0.13
gb|CK103475.1|CK103475 G119P27.5pR Populus tension wood cDN... 40 0.13
gb|CK318616.1|CK318616 X9P01c10 Populus stem seasonal libra... 40 0.13
gb|CV230043.1|CV230043 WS01915.B21_E01 PT-DX-N-A-10 Populus... 40 0.13
gb|CV263762.1|CV263762 WS02022.B21_L12 PTxN-IB-N-A-11 Popul... 40 0.13
gb|DT488066.1|DT488066 WS02535.B21_G17 PT-MB-N-A-15 Populus... 40 0.13
dbj|D43802.1|POPPALG2BA Populus kitakamiensis gene for phen... 40 0.13
gb|AY372451.1| Populus balsamifera subsp. trichocarpa x Pop... 40 0.13
>gb|BI131326.1|BI131326 G119P27Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 362
Score = 40.1 bits (20), Expect = 0.13
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 368 aacaggatcaaggagtgccggtcctacccgctgtac 403
|||||||||||||| ||| |||| ||||| ||||||
Sbjct: 107 aacaggatcaaggaatgcaggtcataccccctgtac 142
>gb|BI132312.1|BI132312 G134P76Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 417
Score = 40.1 bits (20), Expect = 0.13
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 368 aacaggatcaaggagtgccggtcctacccgctgtac 403
|||||||||||||| ||| |||| ||||| ||||||
Sbjct: 63 aacaggatcaaggaatgcaggtcataccccctgtac 98
>gb|BU897133.1|BU897133 X051H08 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 451
Score = 40.1 bits (20), Expect = 0.13
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 368 aacaggatcaaggagtgccggtcctacccgctgtac 403
|||||||||||||| ||| |||| ||||| ||||||
Sbjct: 113 aacaggatcaaggaatgcaggtcataccccctgtac 148
>gb|CF234810.1|CF234810 PtaJXT0015D6D0608 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 757
Score = 40.1 bits (20), Expect = 0.13
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 368 aacaggatcaaggagtgccggtcctacccgctgtac 403
|||||||||||||| ||| |||| ||||| ||||||
Sbjct: 432 aacaggatcaaggaatgcaggtcataccccctgtac 467
>gb|CK093403.1|CK093403 G119P27.3pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G119P27 3', mRNA sequence
Length = 491
Score = 40.1 bits (20), Expect = 0.13
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 368 aacaggatcaaggagtgccggtcctacccgctgtac 403
|||||||||||||| ||| |||| ||||| ||||||
Sbjct: 384 aacaggatcaaggaatgcaggtcataccccctgtac 349
>gb|CK103475.1|CK103475 G119P27.5pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G119P27 5', mRNA sequence
Length = 471
Score = 40.1 bits (20), Expect = 0.13
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 368 aacaggatcaaggagtgccggtcctacccgctgtac 403
|||||||||||||| ||| |||| ||||| ||||||
Sbjct: 108 aacaggatcaaggaatgcaggtcataccccctgtac 143
>gb|CK318616.1|CK318616 X9P01c10 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 635
Score = 40.1 bits (20), Expect = 0.13
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 368 aacaggatcaaggagtgccggtcctacccgctgtac 403
|||||||||||||| ||| |||| ||||| ||||||
Sbjct: 241 aacaggatcaaggaatgcaggtcataccccctgtac 276
>gb|CV230043.1|CV230043 WS01915.B21_E01 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01915_E01 3', mRNA sequence
Length = 460
Score = 40.1 bits (20), Expect = 0.13
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 368 aacaggatcaaggagtgccggtcctacccgctgtac 403
|||||||||||||| ||| |||| ||||| ||||||
Sbjct: 387 aacaggatcaaggaatgcaggtcataccccctgtac 352
>gb|CV263762.1|CV263762 WS02022.B21_L12 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02022_L12 3', mRNA sequence
Length = 939
Score = 40.1 bits (20), Expect = 0.13
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 368 aacaggatcaaggagtgccggtcctacccgctgtac 403
|||||||||||||| ||| |||| ||||| ||||||
Sbjct: 402 aacaggatcaaggaatgcaggtcataccccctgtac 367
>gb|DT488066.1|DT488066 WS02535.B21_G17 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02535_G17 3', mRNA sequence
Length = 633
Score = 40.1 bits (20), Expect = 0.13
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 368 aacaggatcaaggagtgccggtcctacccgctgtac 403
|||||||||||||| ||| |||| ||||| ||||||
Sbjct: 414 aacaggatcaaggaatgcaggtcataccccctgtac 379
>dbj|D43802.1|POPPALG2BA Populus kitakamiensis gene for phenylalanine ammonia-lyase, complete
cds (exon 1 and exon 2)
Length = 4652
Score = 40.1 bits (20), Expect = 0.13
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 368 aacaggatcaaggagtgccggtcctacccgctgtac 403
|||||||||||||| ||| |||| ||||| ||||||
Sbjct: 4039 aacaggatcaaggaatgcaggtcataccccctgtac 4074
>gb|AY372451.1| Populus balsamifera subsp. trichocarpa x Populus deltoides
phenylalanine ammonia lyase (PAL) mRNA, complete cds
Length = 2136
Score = 40.1 bits (20), Expect = 0.13
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 368 aacaggatcaaggagtgccggtcctacccgctgtac 403
|||||||||||||| ||| |||| ||||| ||||||
Sbjct: 1933 aacaggatcaaggaatgcaggtcataccccctgtac 1968
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 65,316
Number of Sequences: 369679
Number of extensions: 65316
Number of successful extensions: 17715
Number of sequences better than 0.5: 12
Number of HSP's better than 0.5 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17691
Number of HSP's gapped (non-prelim): 24
length of query: 844
length of database: 203,408,664
effective HSP length: 19
effective length of query: 825
effective length of database: 196,384,763
effective search space: 162017429475
effective search space used: 162017429475
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)