BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3665525.2.1
(620 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX655011.1|CX655011 PO01003G06 Poplar SC cDNA library Po... 72 3e-011
gb|CV255308.1|CV255308 WS02412.B21_K12 PTxD-ICC-N-A-14 Popu... 70 1e-010
gb|DT517578.1|DT517578 WS02434.B21_L09 PTxD-ICC-N-A-14 Popu... 70 1e-010
gb|CK096470.1|CK096470 UB15CPF09.3pR Populus active cambium... 64 7e-009
gb|CX655147.1|CX655147 PO02030E06 Poplar SC cDNA library Po... 62 3e-008
gb|CK092473.1|CK092473 G084P78.3pR Populus tension wood cDN... 50 1e-004
gb|BI132214.1|BI132214 G133P32Y Populus cambium cDNA librar... 38 0.38
>gb|CX655011.1|CX655011 PO01003G06 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01003G06 5', mRNA sequence
Length = 693
Score = 71.9 bits (36), Expect = 3e-011
Identities = 96/116 (82%)
Strand = Plus / Minus
Query: 503 agcataaattggcccatatgcatgaagaaagtattctgatccgagtaagaaggattgggg 562
|||||| ||||| ||||| |||||||||||||| |||| || || || ||||| | ||
Sbjct: 350 agcatatattggaccatacgcatgaagaaagtactctgtcccaagcaaataggatagtgg 291
Query: 563 ctcataccatttcaacttaggatcagtaaaaacaggccccttcttcatgcatccaa 618
|||||||||||| | ||| |||||||| ||||| || ||||| |||| ||||||||
Sbjct: 290 ctcataccatttgagctttggatcagtgaaaactggtccctttttcaagcatccaa 235
>gb|CV255308.1|CV255308 WS02412.B21_K12 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02412_K12 3', mRNA sequence
Length = 736
Score = 69.9 bits (35), Expect = 1e-010
Identities = 140/175 (80%)
Strand = Plus / Plus
Query: 444 aacatacggaaactgttgttcctcaaagcaaccaagctagccaccacgtcagctgataaa 503
||||| |||||||||||||| || | |||||| || || || || || || || || | |
Sbjct: 494 aacattcggaaactgttgtttctgagagcaactaaacttgcgacaacatctgcagaaaga 553
Query: 504 gcataaattggcccatatgcatgaagaaagtattctgatccgagtaagaaggattggggc 563
||||| ||||| ||||| |||||||||||||| || || || || ||||| | |||
Sbjct: 554 gcatatattggaccatacgcatgaagaaagtactccttcccaagcaaataggatagtggc 613
Query: 564 tcataccatttcaacttaggatcagtaaaaacaggccccttcttcatgcatccaa 618
||||||||||| | ||| |||||||| ||||| |||||||| |||| ||||||||
Sbjct: 614 tcataccatttgagctttggatcagtgaaaactggcccctttttcaagcatccaa 668
>gb|DT517578.1|DT517578 WS02434.B21_L09 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02434_L09 3', mRNA sequence
Length = 911
Score = 69.9 bits (35), Expect = 1e-010
Identities = 140/175 (80%)
Strand = Plus / Plus
Query: 444 aacatacggaaactgttgttcctcaaagcaaccaagctagccaccacgtcagctgataaa 503
||||| |||||||||||||| || | |||||| || || || || || || || || | |
Sbjct: 511 aacattcggaaactgttgtttctgagagcaactaaacttgcgacaacatctgcagaaaga 570
Query: 504 gcataaattggcccatatgcatgaagaaagtattctgatccgagtaagaaggattggggc 563
||||| ||||| ||||| |||||||||||||| || || || || ||||| | |||
Sbjct: 571 gcatatattggaccatacgcatgaagaaagtactccttcccaagcaaataggatagtggc 630
Query: 564 tcataccatttcaacttaggatcagtaaaaacaggccccttcttcatgcatccaa 618
||||||||||| | ||| |||||||| ||||| |||||||| |||| ||||||||
Sbjct: 631 tcataccatttgagctttggatcagtgaaaactggcccctttttcaagcatccaa 685
>gb|CK096470.1|CK096470 UB15CPF09.3pR Populus active cambium cDNA library Populus tremula
cDNA clone UB15CPF09 3', mRNA sequence
Length = 774
Score = 63.9 bits (32), Expect = 7e-009
Identities = 95/116 (81%)
Strand = Plus / Plus
Query: 503 agcataaattggcccatatgcatgaagaaagtattctgatccgagtaagaaggattgggg 562
|||||| ||||| ||||| |||||||||||||| || | || || || ||||| | ||
Sbjct: 416 agcatatattggaccatacgcatgaagaaagtactccgtcccaagcaaataggatagtgg 475
Query: 563 ctcataccatttcaacttaggatcagtaaaaacaggccccttcttcatgcatccaa 618
|||||||||||| | ||| |||||||| ||||| || ||||| |||| ||||||||
Sbjct: 476 ctcataccatttgagctttggatcagtgaaaactggtccctttttcaagcatccaa 531
>gb|CX655147.1|CX655147 PO02030E06 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02030E06 5', mRNA sequence
Length = 600
Score = 61.9 bits (31), Expect = 3e-008
Identities = 49/55 (89%)
Strand = Plus / Minus
Query: 564 tcataccatttcaacttaggatcagtaaaaacaggccccttcttcatgcatccaa 618
||||||||||| | ||| |||||||| ||||| |||||||| |||||||||||||
Sbjct: 418 tcataccatttgagctttggatcagtgaaaactggcccctttttcatgcatccaa 364
>gb|CK092473.1|CK092473 G084P78.3pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G084P78 3', mRNA sequence
Length = 726
Score = 50.1 bits (25), Expect = 1e-004
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 563 ctcataccatttcaacttaggatcagtaaaaacaggccccttcttcatgcatccaat 619
|||||||||||||| ||||||||||| | || || || |||||||||||||||||
Sbjct: 557 ctcataccatttcattttaggatcagtgatcactggtcctttcttcatgcatccaat 613
>gb|BI132214.1|BI132214 G133P32Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 145
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 517 catatgcatgaagaaagta 535
|||||||||||||||||||
Sbjct: 21 catatgcatgaagaaagta 3
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 63,060
Number of Sequences: 369679
Number of extensions: 63060
Number of successful extensions: 16016
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15992
Number of HSP's gapped (non-prelim): 20
length of query: 620
length of database: 203,408,664
effective HSP length: 19
effective length of query: 601
effective length of database: 196,384,763
effective search space: 118027242563
effective search space used: 118027242563
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)