BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3665414.2.1
(3330 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DN486644.1|DN486644 P047G09.3pR Populus petioles cDNA li... 117 3e-024
gb|CV259744.1|CV259744 WS02012.B21_C15 PTxN-IB-N-A-11 Popul... 109 7e-022
gb|CX168744.1|CX168744 E01_69-81_09.ab1 leaf inoculated wit... 101 2e-019
gb|AJ770284.1|AJ770284 AJ770284 Populus euphratica leaf 3-6... 98 3e-018
gb|BU891247.1|BU891247 P047G09 Populus petioles cDNA librar... 88 3e-015
gb|DN496222.1|DN496222 P047G09.5pR Populus petioles cDNA li... 88 3e-015
gb|CF232809.1|CF232809 PtaJXO0016B11B1103 Poplar cDNA libra... 54 4e-005
gb|BU832395.1|BU832395 T033B12 Populus apical shoot cDNA li... 52 1e-004
gb|BU868072.1|BU868072 M110H04 Populus flower cDNA library ... 52 1e-004
gb|BU876446.1|BU876446 V020H01 Populus flower cDNA library ... 52 1e-004
gb|CA933790.1|CA933790 MTU3TS.P12.F07 Aspen stem cDNA Libra... 52 1e-004
gb|CA933835.1|CA933835 MTU3TS.P13.C10 Aspen stem cDNA Libra... 52 1e-004
gb|CA934431.1|CA934431 MTU3TS.P7.E08 Aspen stem cDNA Librar... 52 1e-004
gb|CF119734.1|CF119734 MTU10CS.P5.F10 Aspen stem cDNA Libra... 52 1e-004
gb|CF120031.1|CF120031 MTU10CS.P9.D08 Aspen stem cDNA Libra... 52 1e-004
gb|CN521860.1|CN521860 GQ0113.B3_J07 GQ011 Populus trichoca... 52 1e-004
gb|CN523210.1|CN523210 GQ015M01.B3_D12 GQ015 Populus tricho... 52 1e-004
gb|CV229301.1|CV229301 WS01912.B21_N19 PT-DX-N-A-10 Populus... 52 1e-004
gb|CV237155.1|CV237155 WS01226.B21_F15 PT-GT-FL-A-3 Populus... 52 1e-004
gb|CV237351.1|CV237351 WS01227.B21.1_J08 PT-GT-FL-A-3 Popul... 52 1e-004
gb|CV238600.1|CV238600 WS0127.B21.1_E17 PT-GT-FL-A-3 Populu... 52 1e-004
gb|CV246612.1|CV246612 WS01111.B21_E18 PT-P-FL-A-2 Populus ... 52 1e-004
gb|CV247288.1|CV247288 WS01117.B21_K20 PT-P-FL-A-2 Populus ... 52 1e-004
gb|CV251135.1|CV251135 WS0115.B21_P05 PT-P-FL-A-2 Populus t... 52 1e-004
gb|CV252726.1|CV252726 PX0015.B21_M07 PT-X-FL-A-1 Populus t... 52 1e-004
gb|CV252755.1|CV252755 PX0015.B21_O01 PT-X-FL-A-1 Populus t... 52 1e-004
gb|CV252766.1|CV252766 PX0015.B21_O13 PT-X-FL-A-1 Populus t... 52 1e-004
gb|CV270089.1|CV270089 WS0151.B21_A23 PTxN-IB-A-6 Populus t... 52 1e-004
gb|BP933897.1|BP933897 BP933897 full-length enriched poplar... 52 1e-004
gb|BP934422.1|BP934422 BP934422 full-length enriched poplar... 52 1e-004
gb|BP936065.1|BP936065 BP936065 full-length enriched poplar... 52 1e-004
gb|DT524639.1|DT524639 WS02043.C21_D07 PTxN-IB-N-A-11 Popul... 52 1e-004
gb|DT526039.1|DT526039 WS02046.C21_P10 PTxN-IB-N-A-11 Popul... 52 1e-004
gb|AI163936.1|AI163936 A051P56U Hybrid aspen plasmid librar... 48 0.002
gb|CK088401.1|CK088401 A051P56.3pR Hybrid aspen plasmid lib... 48 0.002
gb|BI070672.1|BI070672 C042P05U Populus strain T89 leaves P... 46 0.009
gb|CA821395.1|CA821395 RSH02D02 two-month-old roots from cl... 46 0.009
gb|CA824985.1|CA824985 R51E02 two-month-old roots from clon... 46 0.009
gb|CN549892.1|CN549892 GQ0244.B3_M16 GQ024 Populus trichoca... 46 0.009
gb|CX168840.1|CX168840 C07_69-7_05.ab1 leaf inoculated with... 46 0.009
gb|DV463799.1|DV463799 MTUNUL1.P2.E10 NUL Populus fremontii... 46 0.009
gb|AI166983.1|AI166983 xylem.est.761 Poplar xylem Lambda ZA... 44 0.034
gb|BU868052.1|BU868052 M110F05 Populus flower cDNA library ... 44 0.034
gb|BU868372.1|BU868372 M114F09 Populus flower cDNA library ... 44 0.034
gb|BU875371.1|BU875371 V006B08 Populus flower cDNA library ... 44 0.034
gb|CN550479.1|CN550479 GQ0244.B3_A10 GQ024 Populus trichoca... 44 0.034
gb|CV239238.1|CV239238 WS0231.B21_M09 PT-MB-A-13 Populus tr... 44 0.034
gb|CV239608.1|CV239608 WS0232.B21_O23 PT-MB-A-13 Populus tr... 44 0.034
gb|CV247792.1|CV247792 WS01119.B21_F18 PT-P-FL-A-2 Populus ... 44 0.034
gb|CV247922.1|CV247922 WS01119.B21_M18 PT-P-FL-A-2 Populus ... 44 0.034
gb|CV267231.1|CV267231 WS02031.B21_D01 PTxN-IB-N-A-11 Popul... 44 0.034
gb|DT473248.1|DT473248 WS01229.BR_A22 PT-GT-FL-A-3 Populus ... 44 0.034
gb|DT475004.1|DT475004 WS0125.BR_L02 PT-GT-FL-A-3 Populus t... 44 0.034
gb|DT475523.1|DT475523 WS0127.BR_G03 PT-GT-FL-A-3 Populus t... 44 0.034
gb|DT476293.1|DT476293 WS01229.B21_A22 PT-GT-FL-A-3 Populus... 44 0.034
gb|DT494758.1|DT494758 WS01119.BR_F18 PT-P-FL-A-2 Populus t... 44 0.034
gb|DT494911.1|DT494911 WS01119.BR_M18 PT-P-FL-A-2 Populus t... 44 0.034
gb|AJ777378.1|AJ777378 AJ777378 Populus euphratica root 3-6... 42 0.14
gb|CV274620.1|CV274620 WS0173.B21_N23 PTxD-NR-A-8 Populus t... 42 0.14
gb|AY554270.1| Populus tremula var. davidiana 26S ribosomal... 42 0.14
>gb|DN486644.1|DN486644 P047G09.3pR Populus petioles cDNA library Populus tremula cDNA clone
P047G09 3', mRNA sequence
Length = 759
Score = 117 bits (59), Expect = 3e-024
Identities = 173/211 (81%)
Strand = Plus / Minus
Query: 2695 gctgaaccaatgcgagcatcaaattcttttgttggtacagaggagtacattgcaccggag 2754
|||||||||||| |||| ||||||||||||||||| || || ||||| || || |||||
Sbjct: 670 gctgaaccaatgagagcttcaaattcttttgttggaactgaagagtatatagctccggaa 611
Query: 2755 attattaccggagctggccatacgagtgctgtagattggtgggcgctaggaattcttcta 2814
|| || || || || |||||||| ||||| || || |||||||| ||||||||||| |||
Sbjct: 610 atcataactggggcaggccataccagtgccgttgactggtgggctctaggaattctgcta 551
Query: 2815 tatgagatgttatatggttatacacccttcagagggaaaacaagacaaaggacatttgct 2874
||||| ||| | ||||| || ||||| ||||| ||||| || || |||| |||||| ||
Sbjct: 550 tatgaaatgctttatggatacacaccattcagggggaagaccaggcaaaagacattcgcc 491
Query: 2875 aatattctgcacaaggatatcagatttcctg 2905
|| ||||| ||||||||| ||| ||| ||||
Sbjct: 490 aacattcttcacaaggatctcaaattccctg 460
>gb|CV259744.1|CV259744 WS02012.B21_C15 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02012_C15 3', mRNA sequence
Length = 775
Score = 109 bits (55), Expect = 7e-022
Identities = 172/211 (81%)
Strand = Plus / Minus
Query: 2695 gctgaaccaatgcgagcatcaaattcttttgttggtacagaggagtacattgcaccggag 2754
|||||||||||| |||| ||||||||||||||||| || || ||||| || || |||||
Sbjct: 744 gctgaaccaatgagagcttcaaattcttttgttggaactgaagagtatatagctccggaa 685
Query: 2755 attattaccggagctggccatacgagtgctgtagattggtgggcgctaggaattcttcta 2814
|| || || || || |||||||| ||||| || || |||||||| ||||||||||| |||
Sbjct: 684 atcataactggggcaggccataccagtgccgtggactggtgggctctaggaattctgcta 625
Query: 2815 tatgagatgttatatggttatacacccttcagagggaaaacaagacaaaggacatttgct 2874
||||| ||| | ||||| || ||||| ||||| || || || || |||| |||||| ||
Sbjct: 624 tatgaaatgctttatggatacacaccattcaggggaaagaccaggcaaaagacattcgcc 565
Query: 2875 aatattctgcacaaggatatcagatttcctg 2905
|| ||||| ||||||||| ||| ||| ||||
Sbjct: 564 aacattcttcacaaggatctcaaattccctg 534
>gb|CX168744.1|CX168744 E01_69-81_09.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 584
Score = 101 bits (51), Expect = 2e-019
Identities = 171/211 (81%)
Strand = Plus / Plus
Query: 2695 gctgaaccaatgcgagcatcaaattcttttgttggtacagaggagtacattgcaccggag 2754
|||||||||||| |||| ||||||||||||||||| || || ||||| || || |||||
Sbjct: 147 gctgaaccaatgagagcttcaaattcttttgttggaactgaagagtatatagctccggaa 206
Query: 2755 attattaccggagctggccatacgagtgctgtagattggtgggcgctaggaattcttcta 2814
|| || | || || |||||||| ||||| || || |||||||| ||||||||||| |||
Sbjct: 207 atcatatctggggcaggccataccagtgccgtggactggtgggctctaggaattctgcta 266
Query: 2815 tatgagatgttatatggttatacacccttcagagggaaaacaagacaaaggacatttgct 2874
||||| ||| | ||||| || ||||| ||||| || || || || |||| |||||| ||
Sbjct: 267 tatgaaatgctttatggatacacaccattcaggggaaagaccaggcaaaagacattcgcc 326
Query: 2875 aatattctgcacaaggatatcagatttcctg 2905
|| ||||| ||||||||| ||| ||| ||||
Sbjct: 327 aacattcttcacaaggatctcaaattccctg 357
>gb|AJ770284.1|AJ770284 AJ770284 Populus euphratica leaf 3-6 months, adult Populus euphratica
cDNA clone P0001100010A04F1, mRNA sequence
Length = 300
Score = 97.6 bits (49), Expect = 3e-018
Identities = 176/217 (81%), Gaps = 1/217 (0%)
Strand = Plus / Plus
Query: 2689 ttttttgctgaaccaatgcgagcatcaaattcttttgttggtacagaggagtacattgca 2748
||||| |||||||||||| |||| ||||||||||||||||| || || ||| | || ||
Sbjct: 46 tttttggctgaaccaatgagagcttcaaattcttttgttggaactgaagag-atatagct 104
Query: 2749 ccggagattattaccggagctggccatacgagtgctgtagattggtgggcgctaggaatt 2808
||||| || || || || || |||||||| ||||| || || |||||||| |||||||||
Sbjct: 105 ccggaaatcataactggggcaggccataccagtgccgtggactggtgggctctaggaatt 164
Query: 2809 cttctatatgagatgttatatggttatacacccttcagagggaaaacaagacaaaggaca 2868
|| |||||||| ||| | ||||| || ||||| ||||| || || || || |||| ||||
Sbjct: 165 ctgctatatgaaatgctttatggatacacacctttcaggggaaagaccaggcaaaagaca 224
Query: 2869 tttgctaatattctgcacaaggatatcagatttcctg 2905
|| || || ||||| ||||||||| ||| ||| ||||
Sbjct: 225 ttcgccaacattcttcacaaggatctcaaattccctg 261
>gb|BU891247.1|BU891247 P047G09 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 569
Score = 87.7 bits (44), Expect = 3e-015
Identities = 188/236 (79%)
Strand = Plus / Plus
Query: 2314 cttgatatgttggaccacccattccttccgacattgtatgcatcatttcagacaaagaca 2373
||||| |||||||||||||| || ||||| | |||||||||||||||||||| || |||
Sbjct: 273 cttgacatgttggaccacccttttcttcctgcgttgtatgcatcatttcagaccaaaaca 332
Query: 2374 catatatgtcttattgttgactattgtgctggtggggaactctttatgctccttgatagg 2433
||||| ||||| || ||| ||||| ||||||| || ||||| |||| | || ||
Sbjct: 333 catatctgtctgataactgattattgccctggtggtgagctcttcctgcttttggacaga 392
Query: 2434 caacctatgaaggttctgaaggaggatgcggtcaggttctatgctgcagaagtggtcaca 2493
|| || | |||||| |||||||| ||||| || || || ||||||||||| || || |
Sbjct: 393 cagccaaagaaggtgctgaaggaagatgctgtgagattttatgctgcagaggtagttatt 452
Query: 2494 gcacttgaatacctacattgccaaggtataatctacagagacttaaagccagagaa 2549
||| | || ||||| ||||| ||||| ||||| ||||| ||||||||||| |||||
Sbjct: 453 gcattggagtaccttcattgtcaagggataatttacagggacttaaagcctgagaa 508
>gb|DN496222.1|DN496222 P047G09.5pR Populus petioles cDNA library Populus tremula cDNA clone
P047G09 5', mRNA sequence
Length = 676
Score = 87.7 bits (44), Expect = 3e-015
Identities = 188/236 (79%)
Strand = Plus / Plus
Query: 2314 cttgatatgttggaccacccattccttccgacattgtatgcatcatttcagacaaagaca 2373
||||| |||||||||||||| || ||||| | |||||||||||||||||||| || |||
Sbjct: 150 cttgacatgttggaccacccttttcttcctgcgttgtatgcatcatttcagaccaaaaca 209
Query: 2374 catatatgtcttattgttgactattgtgctggtggggaactctttatgctccttgatagg 2433
||||| ||||| || ||| ||||| ||||||| || ||||| |||| | || ||
Sbjct: 210 catatctgtctgataactgattattgccctggtggtgagctcttcctgcttttggacaga 269
Query: 2434 caacctatgaaggttctgaaggaggatgcggtcaggttctatgctgcagaagtggtcaca 2493
|| || | |||||| |||||||| ||||| || || || ||||||||||| || || |
Sbjct: 270 cagccaaagaaggtgctgaaggaagatgctgtgagattttatgctgcagaggtagttatt 329
Query: 2494 gcacttgaatacctacattgccaaggtataatctacagagacttaaagccagagaa 2549
||| | || ||||| ||||| ||||| ||||| ||||| ||||||||||| |||||
Sbjct: 330 gcattggagtaccttcattgtcaagggataatttacagggacttaaagcctgagaa 385
Score = 79.8 bits (40), Expect = 6e-013
Identities = 97/116 (83%)
Strand = Plus / Plus
Query: 2695 gctgaaccaatgcgagcatcaaattcttttgttggtacagaggagtacattgcaccggag 2754
|||||||||||| |||| ||||||||||||||||| || || ||||| || || |||||
Sbjct: 531 gctgaaccaatgagagcttcaaattcttttgttggaactgaagagtatatagctccggaa 590
Query: 2755 attattaccggagctggccatacgagtgctgtagattggtgggcgctaggaattct 2810
|| || || || || |||||||| ||||| || || |||||||| |||||||||||
Sbjct: 591 atcataactggggcaggccataccagtgccgttgactggtgggctctaggaattct 646
>gb|CF232809.1|CF232809 PtaJXO0016B11B1103 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 691
Score = 54.0 bits (27), Expect = 4e-005
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 298 ggaggaggagaaggaggagcagcagcagca 327
|||||||||| |||||||||||||||||||
Sbjct: 642 ggaggaggagnaggaggagcagcagcagca 613
>gb|BU832395.1|BU832395 T033B12 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 299
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 298 ggaggaggagaaggaggagcagcagcagca 327
|||||||||| |||||||||||||||||||
Sbjct: 84 ggaggaggaggaggaggagcagcagcagca 55
Score = 42.1 bits (21), Expect = 0.14
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 301 ggaggagaaggaggagcagcagcagcagc 329
||||||| |||||||| ||||||||||||
Sbjct: 84 ggaggaggaggaggaggagcagcagcagc 56
>gb|BU868072.1|BU868072 M110H04 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 482
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 298 ggaggaggagaaggaggagcagcagcagca 327
|||||||||| |||||||||||||||||||
Sbjct: 288 ggaggaggaggaggaggagcagcagcagca 259
Score = 42.1 bits (21), Expect = 0.14
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 301 ggaggagaaggaggagcagcagcagcagc 329
||||||| |||||||| ||||||||||||
Sbjct: 288 ggaggaggaggaggaggagcagcagcagc 260
>gb|BU876446.1|BU876446 V020H01 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 606
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 298 ggaggaggagaaggaggagcagcagcagca 327
|||||||||| |||||||||||||||||||
Sbjct: 293 ggaggaggaggaggaggagcagcagcagca 264
Score = 42.1 bits (21), Expect = 0.14
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 301 ggaggagaaggaggagcagcagcagcagc 329
||||||| |||||||| ||||||||||||
Sbjct: 293 ggaggaggaggaggaggagcagcagcagc 265
>gb|CA933790.1|CA933790 MTU3TS.P12.F07 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 580
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 298 ggaggaggagaaggaggagcagcagcagca 327
|||||||||| |||||||||||||||||||
Sbjct: 543 ggaggaggaggaggaggagcagcagcagca 514
Score = 42.1 bits (21), Expect = 0.14
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 301 ggaggagaaggaggagcagcagcagcagc 329
||||||| |||||||| ||||||||||||
Sbjct: 543 ggaggaggaggaggaggagcagcagcagc 515
>gb|CA933835.1|CA933835 MTU3TS.P13.C10 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 579
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 298 ggaggaggagaaggaggagcagcagcagca 327
|||||||||| |||||||||||||||||||
Sbjct: 38 ggaggaggaggaggaggagcagcagcagca 67
Score = 42.1 bits (21), Expect = 0.14
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 301 ggaggagaaggaggagcagcagcagcagc 329
||||||| |||||||| ||||||||||||
Sbjct: 38 ggaggaggaggaggaggagcagcagcagc 66
>gb|CA934431.1|CA934431 MTU3TS.P7.E08 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 351
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 298 ggaggaggagaaggaggagcagcagcagca 327
|||||||||| |||||||||||||||||||
Sbjct: 38 ggaggaggaggaggaggagcagcagcagca 67
Score = 42.1 bits (21), Expect = 0.14
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 301 ggaggagaaggaggagcagcagcagcagc 329
||||||| |||||||| ||||||||||||
Sbjct: 38 ggaggaggaggaggaggagcagcagcagc 66
>gb|CF119734.1|CF119734 MTU10CS.P5.F10 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 581
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 298 ggaggaggagaaggaggagcagcagcagca 327
|||||||||| |||||||||||||||||||
Sbjct: 38 ggaggaggaggaggaggagcagcagcagca 67
Score = 42.1 bits (21), Expect = 0.14
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 301 ggaggagaaggaggagcagcagcagcagc 329
||||||| |||||||| ||||||||||||
Sbjct: 38 ggaggaggaggaggaggagcagcagcagc 66
>gb|CF120031.1|CF120031 MTU10CS.P9.D08 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 580
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 298 ggaggaggagaaggaggagcagcagcagca 327
|||||||||| |||||||||||||||||||
Sbjct: 543 ggaggaggaggaggaggagcagcagcagca 514
Score = 42.1 bits (21), Expect = 0.14
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 301 ggaggagaaggaggagcagcagcagcagc 329
||||||| |||||||| ||||||||||||
Sbjct: 543 ggaggaggaggaggaggagcagcagcagc 515
>gb|CN521860.1|CN521860 GQ0113.B3_J07 GQ011 Populus trichocarpa x Populus deltoides cDNA
clone GQ0113_J07 5', mRNA sequence
Length = 266
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 298 ggaggaggagaaggaggagcagcagcagca 327
|||||||||| |||||||||||||||||||
Sbjct: 212 ggaggaggaggaggaggagcagcagcagca 183
Score = 42.1 bits (21), Expect = 0.14
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 301 ggaggagaaggaggagcagcagcagcagc 329
||||||| |||||||| ||||||||||||
Sbjct: 212 ggaggaggaggaggaggagcagcagcagc 184
>gb|CN523210.1|CN523210 GQ015M01.B3_D12 GQ015 Populus trichocarpa x Populus deltoides cDNA
clone GQ015M01_D12 5', mRNA sequence
Length = 729
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 298 ggaggaggagaaggaggagcagcagcagca 327
|||||||||| |||||||||||||||||||
Sbjct: 511 ggaggaggaggaggaggagcagcagcagca 482
Score = 42.1 bits (21), Expect = 0.14
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 301 ggaggagaaggaggagcagcagcagcagc 329
||||||| |||||||| ||||||||||||
Sbjct: 511 ggaggaggaggaggaggagcagcagcagc 483
>gb|CV229301.1|CV229301 WS01912.B21_N19 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01912_N19 3', mRNA sequence
Length = 344
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 298 ggaggaggagaaggaggagcagcagcagca 327
|||||||||| |||||||||||||||||||
Sbjct: 224 ggaggaggaggaggaggagcagcagcagca 253
Score = 42.1 bits (21), Expect = 0.14
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 301 ggaggagaaggaggagcagcagcagcagc 329
||||||| |||||||| ||||||||||||
Sbjct: 224 ggaggaggaggaggaggagcagcagcagc 252
>gb|CV237155.1|CV237155 WS01226.B21_F15 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01226_F15 3', mRNA sequence
Length = 820
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 298 ggaggaggagaaggaggagcagcagcagca 327
|||||||||| |||||||||||||||||||
Sbjct: 244 ggaggaggaggaggaggagcagcagcagca 273
Score = 42.1 bits (21), Expect = 0.14
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 301 ggaggagaaggaggagcagcagcagcagc 329
||||||| |||||||| ||||||||||||
Sbjct: 244 ggaggaggaggaggaggagcagcagcagc 272
>gb|CV237351.1|CV237351 WS01227.B21.1_J08 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01227_J08 3', mRNA sequence
Length = 820
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 298 ggaggaggagaaggaggagcagcagcagca 327
|||||||||| |||||||||||||||||||
Sbjct: 388 ggaggaggaggaggaggagcagcagcagca 417
Score = 42.1 bits (21), Expect = 0.14
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 301 ggaggagaaggaggagcagcagcagcagc 329
||||||| |||||||| ||||||||||||
Sbjct: 388 ggaggaggaggaggaggagcagcagcagc 416
>gb|CV238600.1|CV238600 WS0127.B21.1_E17 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0127_E17 3', mRNA sequence
Length = 602
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 298 ggaggaggagaaggaggagcagcagcagca 327
|||||||||| |||||||||||||||||||
Sbjct: 263 ggaggaggaggaggaggagcagcagcagca 292
Score = 42.1 bits (21), Expect = 0.14
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 301 ggaggagaaggaggagcagcagcagcagc 329
||||||| |||||||| ||||||||||||
Sbjct: 263 ggaggaggaggaggaggagcagcagcagc 291
>gb|CV246612.1|CV246612 WS01111.B21_E18 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01111_E18 3', mRNA sequence
Length = 625
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 298 ggaggaggagaaggaggagcagcagcagca 327
|||||||||| |||||||||||||||||||
Sbjct: 223 ggaggaggaggaggaggagcagcagcagca 252
Score = 42.1 bits (21), Expect = 0.14
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 301 ggaggagaaggaggagcagcagcagcagc 329
||||||| |||||||| ||||||||||||
Sbjct: 223 ggaggaggaggaggaggagcagcagcagc 251
>gb|CV247288.1|CV247288 WS01117.B21_K20 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01117_K20 3', mRNA sequence
Length = 843
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 298 ggaggaggagaaggaggagcagcagcagca 327
|||||||||| |||||||||||||||||||
Sbjct: 213 ggaggaggaggaggaggagcagcagcagca 242
Score = 42.1 bits (21), Expect = 0.14
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 301 ggaggagaaggaggagcagcagcagcagc 329
||||||| |||||||| ||||||||||||
Sbjct: 213 ggaggaggaggaggaggagcagcagcagc 241
>gb|CV251135.1|CV251135 WS0115.B21_P05 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS0115_P05 3', mRNA sequence
Length = 703
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 298 ggaggaggagaaggaggagcagcagcagca 327
|||||||||| |||||||||||||||||||
Sbjct: 213 ggaggaggaggaggaggagcagcagcagca 242
Score = 42.1 bits (21), Expect = 0.14
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 301 ggaggagaaggaggagcagcagcagcagc 329
||||||| |||||||| ||||||||||||
Sbjct: 213 ggaggaggaggaggaggagcagcagcagc 241
>gb|CV252726.1|CV252726 PX0015.B21_M07 PT-X-FL-A-1 Populus trichocarpa cDNA clone
PX0015_M07 3', mRNA sequence
Length = 687
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 298 ggaggaggagaaggaggagcagcagcagca 327
|||||||||| |||||||||||||||||||
Sbjct: 225 ggaggaggaggaggaggagcagcagcagca 254
Score = 42.1 bits (21), Expect = 0.14
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 301 ggaggagaaggaggagcagcagcagcagc 329
||||||| |||||||| ||||||||||||
Sbjct: 225 ggaggaggaggaggaggagcagcagcagc 253
>gb|CV252755.1|CV252755 PX0015.B21_O01 PT-X-FL-A-1 Populus trichocarpa cDNA clone
PX0015_O01 3', mRNA sequence
Length = 694
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 298 ggaggaggagaaggaggagcagcagcagca 327
|||||||||| |||||||||||||||||||
Sbjct: 225 ggaggaggaggaggaggagcagcagcagca 254
Score = 42.1 bits (21), Expect = 0.14
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 301 ggaggagaaggaggagcagcagcagcagc 329
||||||| |||||||| ||||||||||||
Sbjct: 225 ggaggaggaggaggaggagcagcagcagc 253
>gb|CV252766.1|CV252766 PX0015.B21_O13 PT-X-FL-A-1 Populus trichocarpa cDNA clone
PX0015_O13 3', mRNA sequence
Length = 694
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 298 ggaggaggagaaggaggagcagcagcagca 327
|||||||||| |||||||||||||||||||
Sbjct: 225 ggaggaggaggaggaggagcagcagcagca 254
Score = 42.1 bits (21), Expect = 0.14
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 301 ggaggagaaggaggagcagcagcagcagc 329
||||||| |||||||| ||||||||||||
Sbjct: 225 ggaggaggaggaggaggagcagcagcagc 253
>gb|CV270089.1|CV270089 WS0151.B21_A23 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0151_A23 3', mRNA sequence
Length = 363
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 298 ggaggaggagaaggaggagcagcagcagca 327
|||||||||| |||||||||||||||||||
Sbjct: 237 ggaggaggaggaggaggagcagcagcagca 266
Score = 42.1 bits (21), Expect = 0.14
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 301 ggaggagaaggaggagcagcagcagcagc 329
||||||| |||||||| ||||||||||||
Sbjct: 237 ggaggaggaggaggaggagcagcagcagc 265
>gb|BP933897.1|BP933897 BP933897 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-057_O02.r 3', mRNA sequence
Length = 525
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 298 ggaggaggagaaggaggagcagcagcagca 327
|||||||||| |||||||||||||||||||
Sbjct: 276 ggaggaggaggaggaggagcagcagcagca 305
Score = 42.1 bits (21), Expect = 0.14
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 301 ggaggagaaggaggagcagcagcagcagc 329
||||||| |||||||| ||||||||||||
Sbjct: 276 ggaggaggaggaggaggagcagcagcagc 304
>gb|BP934422.1|BP934422 BP934422 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-065_D12.r 3', mRNA sequence
Length = 525
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 298 ggaggaggagaaggaggagcagcagcagca 327
|||||||||| |||||||||||||||||||
Sbjct: 274 ggaggaggaggaggaggagcagcagcagca 303
Score = 42.1 bits (21), Expect = 0.14
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 301 ggaggagaaggaggagcagcagcagcagc 329
||||||| |||||||| ||||||||||||
Sbjct: 274 ggaggaggaggaggaggagcagcagcagc 302
>gb|BP936065.1|BP936065 BP936065 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-085_I11.r 3', mRNA sequence
Length = 476
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 298 ggaggaggagaaggaggagcagcagcagca 327
|||||||||| |||||||||||||||||||
Sbjct: 237 ggaggaggaggaggaggagcagcagcagca 266
Score = 42.1 bits (21), Expect = 0.14
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 301 ggaggagaaggaggagcagcagcagcagc 329
||||||| |||||||| ||||||||||||
Sbjct: 237 ggaggaggaggaggaggagcagcagcagc 265
>gb|DT524639.1|DT524639 WS02043.C21_D07 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02043_D07 3', mRNA sequence
Length = 336
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 298 ggaggaggagaaggaggagcagcagcagca 327
|||||||||| |||||||||||||||||||
Sbjct: 216 ggaggaggaggaggaggagcagcagcagca 245
Score = 42.1 bits (21), Expect = 0.14
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 301 ggaggagaaggaggagcagcagcagcagc 329
||||||| |||||||| ||||||||||||
Sbjct: 216 ggaggaggaggaggaggagcagcagcagc 244
>gb|DT526039.1|DT526039 WS02046.C21_P10 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02046_P10 3', mRNA sequence
Length = 696
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 298 ggaggaggagaaggaggagcagcagcagca 327
|||||||||| |||||||||||||||||||
Sbjct: 199 ggaggaggaggaggaggagcagcagcagca 228
Score = 42.1 bits (21), Expect = 0.14
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 301 ggaggagaaggaggagcagcagcagcagc 329
||||||| |||||||| ||||||||||||
Sbjct: 199 ggaggaggaggaggaggagcagcagcagc 227
>gb|AI163936.1|AI163936 A051P56U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 381
Score = 48.1 bits (24), Expect = 0.002
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 299 gaggaggagaaggaggagcagcagcagc 326
||||||||| ||||||||||||||||||
Sbjct: 231 gaggaggaggaggaggagcagcagcagc 258
>gb|CK088401.1|CK088401 A051P56.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A051P56 3', mRNA sequence
Length = 776
Score = 48.1 bits (24), Expect = 0.002
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 299 gaggaggagaaggaggagcagcagcagc 326
||||||||| ||||||||||||||||||
Sbjct: 585 gaggaggaggaggaggagcagcagcagc 558
>gb|BI070672.1|BI070672 C042P05U Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 487
Score = 46.1 bits (23), Expect = 0.009
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 2587 gactttgatttgtcttgcttgacatcctgccgaccacaa 2625
|||||||||||||| | ||||||||||||| |||||||
Sbjct: 57 gactttgatttgtcattcttgacatcctgcaaaccacaa 95
>gb|CA821395.1|CA821395 RSH02D02 two-month-old roots from clone 'Beaupre' grown for 19 days
under restricted irrigation Populus trichocarpa x
Populus deltoides cDNA 5', mRNA sequence
Length = 648
Score = 46.1 bits (23), Expect = 0.009
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 307 gaaggaggagcagcagcagcagc 329
|||||||||||||||||||||||
Sbjct: 147 gaaggaggagcagcagcagcagc 169
>gb|CA824985.1|CA824985 R51E02 two-month-old roots from clone 'Beaupre' Populus trichocarpa
x Populus deltoides cDNA 5', mRNA sequence
Length = 548
Score = 46.1 bits (23), Expect = 0.009
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 301 ggaggagaaggaggagcagcagcagca 327
||||||| |||||||||||||||||||
Sbjct: 242 ggaggaggaggaggagcagcagcagca 216
>gb|CN549892.1|CN549892 GQ0244.B3_M16 GQ024 Populus trichocarpa x Populus deltoides cDNA
clone GQ0244_M16 5', mRNA sequence
Length = 480
Score = 46.1 bits (23), Expect = 0.009
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 301 ggaggagaaggaggagcagcagcagca 327
||||||| |||||||||||||||||||
Sbjct: 447 ggaggaggaggaggagcagcagcagca 421
>gb|CX168840.1|CX168840 C07_69-7_05.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 647
Score = 46.1 bits (23), Expect = 0.009
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 301 ggaggagaaggaggagcagcagcagca 327
||||||| |||||||||||||||||||
Sbjct: 218 ggaggaggaggaggagcagcagcagca 244
>gb|DV463799.1|DV463799 MTUNUL1.P2.E10 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 756
Score = 46.1 bits (23), Expect = 0.009
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 2587 gactttgatttgtcttgcttgacatcctgccgaccacaa 2625
|||||||||||||| | ||||||||||||| |||||||
Sbjct: 549 gactttgatttgtcattcttgacatcctgcaaaccacaa 587
>gb|AI166983.1|AI166983 xylem.est.761 Poplar xylem Lambda ZAPII library Populus trichocarpa
cDNA 5', mRNA sequence
Length = 369
Score = 44.1 bits (22), Expect = 0.034
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 308 aaggaggagcagcagcagcagc 329
||||||||||||||||||||||
Sbjct: 130 aaggaggagcagcagcagcagc 151
>gb|BU868052.1|BU868052 M110F05 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 682
Score = 44.1 bits (22), Expect = 0.034
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 308 aaggaggagcagcagcagcagc 329
||||||||||||||||||||||
Sbjct: 214 aaggaggagcagcagcagcagc 235
>gb|BU868372.1|BU868372 M114F09 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 606
Score = 44.1 bits (22), Expect = 0.034
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 308 aaggaggagcagcagcagcagc 329
||||||||||||||||||||||
Sbjct: 132 aaggaggagcagcagcagcagc 153
>gb|BU875371.1|BU875371 V006B08 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 604
Score = 44.1 bits (22), Expect = 0.034
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 308 aaggaggagcagcagcagcagc 329
||||||||||||||||||||||
Sbjct: 128 aaggaggagcagcagcagcagc 149
>gb|CN550479.1|CN550479 GQ0244.B3_A10 GQ024 Populus trichocarpa x Populus deltoides cDNA
clone GQ0244_A10 5', mRNA sequence
Length = 696
Score = 44.1 bits (22), Expect = 0.034
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 308 aaggaggagcagcagcagcagc 329
||||||||||||||||||||||
Sbjct: 124 aaggaggagcagcagcagcagc 145
>gb|CV239238.1|CV239238 WS0231.B21_M09 PT-MB-A-13 Populus trichocarpa cDNA clone WS0231_M09
3', mRNA sequence
Length = 755
Score = 44.1 bits (22), Expect = 0.034
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 308 aaggaggagcagcagcagcagc 329
||||||||||||||||||||||
Sbjct: 686 aaggaggagcagcagcagcagc 665
>gb|CV239608.1|CV239608 WS0232.B21_O23 PT-MB-A-13 Populus trichocarpa cDNA clone WS0232_O23
3', mRNA sequence
Length = 734
Score = 44.1 bits (22), Expect = 0.034
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 308 aaggaggagcagcagcagcagc 329
||||||||||||||||||||||
Sbjct: 657 aaggaggagcagcagcagcagc 636
>gb|CV247792.1|CV247792 WS01119.B21_F18 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01119_F18 3', mRNA sequence
Length = 732
Score = 44.1 bits (22), Expect = 0.034
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 308 aaggaggagcagcagcagcagc 329
||||||||||||||||||||||
Sbjct: 655 aaggaggagcagcagcagcagc 634
>gb|CV247922.1|CV247922 WS01119.B21_M18 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01119_M18 3', mRNA sequence
Length = 704
Score = 44.1 bits (22), Expect = 0.034
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 308 aaggaggagcagcagcagcagc 329
||||||||||||||||||||||
Sbjct: 653 aaggaggagcagcagcagcagc 632
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 417,407
Number of Sequences: 369679
Number of extensions: 417407
Number of successful extensions: 136098
Number of sequences better than 0.5: 60
Number of HSP's better than 0.5 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 135873
Number of HSP's gapped (non-prelim): 177
length of query: 3330
length of database: 203,408,664
effective HSP length: 20
effective length of query: 3310
effective length of database: 196,015,084
effective search space: 648809928040
effective search space used: 648809928040
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)