BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3570920.2.1
(786 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AJ534481.1|AJ534481 AJ534481 Populus euphratica root and... 42 0.031
gb|AJ770031.1|AJ770031 AJ770031 Populus euphratica leaf 3-6... 42 0.031
gb|CA933471.1|CA933471 MTU5CS.P8.E06 Aspen stem cDNA Librar... 40 0.12
gb|CF118925.1|CF118925 MTU10CS.P11.C02 Aspen stem cDNA Libr... 40 0.12
gb|CA924833.1|CA924833 MTU7TL.P10.B12 Aspen leaf cDNA Libra... 38 0.49
gb|CA925020.1|CA925020 MTU7TL.P12.F05 Aspen leaf cDNA Libra... 38 0.49
gb|CV239737.1|CV239737 WS0233.B21_F04 PT-MB-A-13 Populus tr... 38 0.49
gb|CV240407.1|CV240407 WS0251.B21_E19 PT-MB-N-A-15 Populus ... 38 0.49
gb|CV240600.1|CV240600 WS0251.B21_N09 PT-MB-N-A-15 Populus ... 38 0.49
gb|CV243302.1|CV243302 WS02518.B21_H20 PT-MB-N-A-15 Populus... 38 0.49
gb|DT507248.1|DT507248 WS02417.BR_M01 PTxD-ICC-N-A-14 Popul... 38 0.49
gb|DT511887.1|DT511887 WS02417.B21_M01 PTxD-ICC-N-A-14 Popu... 38 0.49
gb|AF139835.1|AF139835 Populus tremula x Populus tremuloide... 38 0.49
>gb|AJ534481.1|AJ534481 AJ534481 Populus euphratica root and shoot Populus euphratica cDNA
clone 46, mRNA sequence
Length = 574
Score = 42.1 bits (21), Expect = 0.031
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 766 ggtacctgcccgggcggccgc 786
|||||||||||||||||||||
Sbjct: 478 ggtacctgcccgggcggccgc 498
>gb|AJ770031.1|AJ770031 AJ770031 Populus euphratica leaf 3-6 months, adult Populus
euphratica cDNA clone P0001100006A03F1, mRNA sequence
Length = 222
Score = 42.1 bits (21), Expect = 0.031
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 761 ctaatggtacctgcccgggcg 781
|||||||||||||||||||||
Sbjct: 202 ctaatggtacctgcccgggcg 222
>gb|CA933471.1|CA933471 MTU5CS.P8.E06 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 606
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 767 gtacctgcccgggcggccgc 786
||||||||||||||||||||
Sbjct: 289 gtacctgcccgggcggccgc 270
>gb|CF118925.1|CF118925 MTU10CS.P11.C02 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 786
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 767 gtacctgcccgggcggccgc 786
||||||||||||||||||||
Sbjct: 656 gtacctgcccgggcggccgc 637
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 767 gtacctgcccgggcggccgc 786
||||||||||||||||||||
Sbjct: 625 gtacctgcccgggcggccgc 644
>gb|CA924833.1|CA924833 MTU7TL.P10.B12 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 569
Score = 38.2 bits (19), Expect = 0.49
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 768 tacctgcccgggcggccgc 786
|||||||||||||||||||
Sbjct: 529 tacctgcccgggcggccgc 547
>gb|CA925020.1|CA925020 MTU7TL.P12.F05 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 568
Score = 38.2 bits (19), Expect = 0.49
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 768 tacctgcccgggcggccgc 786
|||||||||||||||||||
Sbjct: 529 tacctgcccgggcggccgc 547
>gb|CV239737.1|CV239737 WS0233.B21_F04 PT-MB-A-13 Populus trichocarpa cDNA clone WS0233_F04
3', mRNA sequence
Length = 666
Score = 38.2 bits (19), Expect = 0.49
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 129 caccatctccagcacccac 147
|||||||||||||||||||
Sbjct: 495 caccatctccagcacccac 477
>gb|CV240407.1|CV240407 WS0251.B21_E19 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0251_E19 3', mRNA sequence
Length = 573
Score = 38.2 bits (19), Expect = 0.49
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 353 tgattgacccaaacactgg 371
|||||||||||||||||||
Sbjct: 516 tgattgacccaaacactgg 498
>gb|CV240600.1|CV240600 WS0251.B21_N09 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0251_N09 3', mRNA sequence
Length = 907
Score = 38.2 bits (19), Expect = 0.49
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 129 caccatctccagcacccac 147
|||||||||||||||||||
Sbjct: 485 caccatctccagcacccac 467
>gb|CV243302.1|CV243302 WS02518.B21_H20 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02518_H20 3', mRNA sequence
Length = 629
Score = 38.2 bits (19), Expect = 0.49
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 129 caccatctccagcacccac 147
|||||||||||||||||||
Sbjct: 492 caccatctccagcacccac 474
>gb|DT507248.1|DT507248 WS02417.BR_M01 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02417_M01 5', mRNA sequence
Length = 728
Score = 38.2 bits (19), Expect = 0.49
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 129 caccatctccagcacccac 147
|||||||||||||||||||
Sbjct: 365 caccatctccagcacccac 383
>gb|DT511887.1|DT511887 WS02417.B21_M01 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02417_M01 3', mRNA sequence
Length = 728
Score = 38.2 bits (19), Expect = 0.49
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 129 caccatctccagcacccac 147
|||||||||||||||||||
Sbjct: 364 caccatctccagcacccac 346
>gb|AF139835.1|AF139835 Populus tremula x Populus tremuloides F-box containing protein TIR1
(TIR1) mRNA, complete cds
Length = 2646
Score = 38.2 bits (19), Expect = 0.49
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 768 tacctgcccgggcggccgc 786
|||||||||||||||||||
Sbjct: 65 tacctgcccgggcggccgc 47
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 78,603
Number of Sequences: 369679
Number of extensions: 78603
Number of successful extensions: 19576
Number of sequences better than 0.5: 13
Number of HSP's better than 0.5 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19551
Number of HSP's gapped (non-prelim): 25
length of query: 786
length of database: 203,408,664
effective HSP length: 19
effective length of query: 767
effective length of database: 196,384,763
effective search space: 150627113221
effective search space used: 150627113221
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)