BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3390529.2.1
(407 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI121593.1|BI121593 F041P15Y Populus flower cDNA library... 42 0.016
gb|BI125918.1|BI125918 I067P89P Populus leaf cDNA library P... 42 0.016
gb|BU809631.1|BU809631 UL60PB03 Populus leaf cDNA library P... 42 0.016
gb|BU825401.1|BU825401 UK108TC08 Populus apical shoot cDNA ... 42 0.016
gb|BU827221.1|BU827221 UK129TH06 Populus apical shoot cDNA ... 42 0.016
gb|BU827970.1|BU827970 K013P59P Populus apical shoot cDNA l... 42 0.016
gb|BU832675.1|BU832675 T037A02 Populus apical shoot cDNA li... 42 0.016
gb|BU868620.1|BU868620 M118B08 Populus flower cDNA library ... 42 0.016
gb|CA823405.1|CA823405 R25F12 two-month-old roots from clon... 42 0.016
gb|CA825790.1|CA825790 R67E10 two-month-old roots from clon... 42 0.016
gb|CK097265.1|CK097265 UB45DPE08.3pR Populus active cambium... 42 0.016
gb|CN524077.1|CN524077 GQ015M04.T3_E05 GQ015 Populus tricho... 42 0.016
gb|CK318026.1|CK318026 B9P04f03 Populus stem seasonal libra... 42 0.016
gb|CK319662.1|CK319662 B9SP07f06 Populus stem seasonal libr... 42 0.016
gb|AJ768524.1|AJ768524 AJ768524 Populus euphratica leaf adu... 42 0.016
gb|AJ776930.1|AJ776930 AJ776930 Populus euphratica root 3-6... 42 0.016
gb|CV227500.1|CV227500 WS0167.B21_F19 PT-DX-A-7 Populus tri... 42 0.016
gb|CV237173.1|CV237173 WS01226.B21_I14 PT-GT-FL-A-3 Populus... 42 0.016
gb|CV242511.1|CV242511 WS02515.B21_E05 PT-MB-N-A-15 Populus... 42 0.016
gb|CV242513.1|CV242513 WS02515.B21_E08 PT-MB-N-A-15 Populus... 42 0.016
gb|CV242526.1|CV242526 WS02515.B21_E22 PT-MB-N-A-15 Populus... 42 0.016
gb|CV243712.1|CV243712 WS0252.B21_K08 PT-MB-N-A-15 Populus ... 42 0.016
gb|CV245654.1|CV245654 WS0259.B21_A10 PT-MB-N-A-15 Populus ... 42 0.016
gb|CV254935.1|CV254935 WS02411.B21_J19 PTxD-ICC-N-A-14 Popu... 42 0.016
gb|CV256396.1|CV256396 WS0243.B21_L18 PTxD-ICC-N-A-14 Popul... 42 0.016
gb|CV267241.1|CV267241 WS02031.B21_D11 PTxN-IB-N-A-11 Popul... 42 0.016
gb|CV274419.1|CV274419 WS0173.B21_D15 PTxD-NR-A-8 Populus t... 42 0.016
gb|CX169758.1|CX169758 D07_69-49_07.ab1 leaf inoculated wit... 42 0.016
gb|CX170168.1|CX170168 C06_69-47_06.ab1 leaf inoculated wit... 42 0.016
gb|CX174673.1|CX174673 G10_69-32_14.ab1 leaf inoculated wit... 42 0.016
gb|DN492237.1|DN492237 V057F01.3pR Populus male catkins cDN... 42 0.016
gb|DT470758.1|DT470758 WS01210.BR_M01 PT-GT-FL-A-3 Populus ... 42 0.016
gb|DT471394.1|DT471394 WS01213.BR_K18 PT-GT-FL-A-3 Populus ... 42 0.016
gb|DT471446.1|DT471446 WS01213.BR_N24 PT-GT-FL-A-3 Populus ... 42 0.016
gb|DT472419.1|DT472419 WS01226.BR.1_I14 PT-GT-FL-A-3 Populu... 42 0.016
gb|DT473912.1|DT473912 WS01230.BR_C05 PT-GT-FL-A-3 Populus ... 42 0.016
gb|DT476592.1|DT476592 WS01230.B21_C05 PT-GT-FL-A-3 Populus... 42 0.016
gb|DT477112.1|DT477112 WS02519.BR_A01 PT-MB-N-A-15 Populus ... 42 0.016
gb|DT482137.1|DT482137 WS02519.B21_A01 PT-MB-N-A-15 Populus... 42 0.016
gb|DT508470.1|DT508470 WS02421.BR_B02 PTxD-ICC-N-A-14 Popul... 42 0.016
gb|DT510453.1|DT510453 WS02426.BR_J13 PTxD-ICC-N-A-14 Popul... 42 0.016
gb|DT513079.1|DT513079 WS02421.B21_B02 PTxD-ICC-N-A-14 Popu... 42 0.016
gb|DT515080.1|DT515080 WS02426.B21_J13 PTxD-ICC-N-A-14 Popu... 42 0.016
gb|DT517112.1|DT517112 WS02433.B21_F12 PTxD-ICC-N-A-14 Popu... 42 0.016
gb|DT525812.1|DT525812 WS02046.C21_F18 PTxN-IB-N-A-11 Popul... 42 0.016
>gb|BI121593.1|BI121593 F041P15Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 211
Score = 42.1 bits (21), Expect = 0.016
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 171 aggcaacttcatcaagttcacggccatcggcgtgtacctggagga 215
|||||| ||||| ||||||||||| || || |||||| |||||||
Sbjct: 122 aggcaagttcataaagttcacggctataggagtgtacttggagga 166
>gb|BI125918.1|BI125918 I067P89P Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 209
Score = 42.1 bits (21), Expect = 0.016
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 171 aggcaacttcatcaagttcacggccatcggcgtgtacctggagga 215
|||||| ||||| ||||||||||| || || |||||| |||||||
Sbjct: 127 aggcaagttcataaagttcacggctataggagtgtacttggagga 171
>gb|BU809631.1|BU809631 UL60PB03 Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 437
Score = 42.1 bits (21), Expect = 0.016
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 171 aggcaacttcatcaagttcacggccatcggcgtgtacctggagga 215
|||||| ||||| ||||||||||| || || |||||| |||||||
Sbjct: 162 aggcaagttcataaagttcacggctataggagtgtacttggagga 206
>gb|BU825401.1|BU825401 UK108TC08 Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 564
Score = 42.1 bits (21), Expect = 0.016
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 171 aggcaacttcatcaagttcacggccatcggcgtgtacctggagga 215
|||||| ||||| ||||||||||| || || |||||| |||||||
Sbjct: 154 aggcaagttcataaagttcacggctataggagtgtacttggagga 198
>gb|BU827221.1|BU827221 UK129TH06 Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 609
Score = 42.1 bits (21), Expect = 0.016
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 171 aggcaacttcatcaagttcacggccatcggcgtgtacctggagga 215
|||||| ||||| ||||||||||| || || |||||| |||||||
Sbjct: 150 aggcaagttcataaagttcacggctataggagtgtacttggagga 194
>gb|BU827970.1|BU827970 K013P59P Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 573
Score = 42.1 bits (21), Expect = 0.016
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 171 aggcaacttcatcaagttcacggccatcggcgtgtacctggagga 215
|||||| ||||| ||||||||||| || || |||||| |||||||
Sbjct: 134 aggcaagttcataaagttcacggctataggagtgtacttggagga 178
>gb|BU832675.1|BU832675 T037A02 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 704
Score = 42.1 bits (21), Expect = 0.016
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 171 aggcaacttcatcaagttcacggccatcggcgtgtacctggagga 215
|||||| ||||| ||||||||||| || || |||||| |||||||
Sbjct: 156 aggcaagttcataaagttcacggctataggagtgtacttggagga 200
>gb|BU868620.1|BU868620 M118B08 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 776
Score = 42.1 bits (21), Expect = 0.016
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 171 aggcaacttcatcaagttcacggccatcggcgtgtacctggagga 215
|||||| ||||| ||||||||||| || || |||||| |||||||
Sbjct: 147 aggcaagttcataaagttcacggctataggagtgtacttggagga 191
>gb|CA823405.1|CA823405 R25F12 two-month-old roots from clone 'Beaupre' Populus trichocarpa
x Populus deltoides cDNA 5', mRNA sequence
Length = 635
Score = 42.1 bits (21), Expect = 0.016
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 171 aggcaacttcatcaagttcacggccatcggcgtgtacctggagga 215
|||||| ||||| ||||||||||| || || |||||| |||||||
Sbjct: 142 aggcaagttcataaagttcacggctataggagtgtacttggagga 186
>gb|CA825790.1|CA825790 R67E10 two-month-old roots from clone 'Beaupre' Populus trichocarpa
x Populus deltoides cDNA 5', mRNA sequence
Length = 618
Score = 42.1 bits (21), Expect = 0.016
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 171 aggcaacttcatcaagttcacggccatcggcgtgtacctggagga 215
|||||| ||||| ||||||||||| || || |||||| |||||||
Sbjct: 158 aggcaagttcataaagttcacggctataggagtgtacttggagga 202
>gb|CK097265.1|CK097265 UB45DPE08.3pR Populus active cambium cDNA library Populus tremula
cDNA clone UB45DPE08 3', mRNA sequence
Length = 672
Score = 42.1 bits (21), Expect = 0.016
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 171 aggcaacttcatcaagttcacggccatcggcgtgtacctggagga 215
|||||| ||||| ||||||||||| || || |||||| |||||||
Sbjct: 630 aggcaagttcataaagttcacggctataggagtgtacttggagga 586
>gb|CN524077.1|CN524077 GQ015M04.T3_E05 GQ015 Populus trichocarpa x Populus deltoides cDNA
clone GQ015M04_E05 5', mRNA sequence
Length = 776
Score = 42.1 bits (21), Expect = 0.016
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 171 aggcaacttcatcaagttcacggccatcggcgtgtacctggagga 215
|||||| ||||| ||||||||||| || || |||||| |||||||
Sbjct: 134 aggcaagttcataaagttcacggctataggagtgtacttggagga 178
>gb|CK318026.1|CK318026 B9P04f03 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 729
Score = 42.1 bits (21), Expect = 0.016
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 171 aggcaacttcatcaagttcacggccatcggcgtgtacctggagga 215
|||||| ||||| ||||||||||| || || |||||| |||||||
Sbjct: 150 aggcaagttcataaagttcacggctataggagtgtacttggagga 194
>gb|CK319662.1|CK319662 B9SP07f06 Populus stem seasonal library Populus deltoides cDNA,
mRNA sequence
Length = 912
Score = 42.1 bits (21), Expect = 0.016
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 171 aggcaacttcatcaagttcacggccatcggcgtgtacctggagga 215
|||||| ||||| ||||||||||| || || |||||| |||||||
Sbjct: 191 aggcaagttcataaagttcacggctataggagtgtacttggagga 235
>gb|AJ768524.1|AJ768524 AJ768524 Populus euphratica leaf adult Populus euphratica cDNA
clone P0000100018H01F1, mRNA sequence
Length = 533
Score = 42.1 bits (21), Expect = 0.016
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 171 aggcaacttcatcaagttcacggccatcggcgtgtacctggagga 215
|||||| ||||| ||||||||||| || || |||||| |||||||
Sbjct: 142 aggcaagttcataaagttcacggctataggagtgtacttggagga 186
>gb|AJ776930.1|AJ776930 AJ776930 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400020E02F1, mRNA sequence
Length = 512
Score = 42.1 bits (21), Expect = 0.016
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 171 aggcaacttcatcaagttcacggccatcggcgtgtacctggagga 215
|||||| ||||| ||||||||||| || || |||||| |||||||
Sbjct: 136 aggcaagttcataaagttcacggctataggagtgtacttggagga 180
>gb|CV227500.1|CV227500 WS0167.B21_F19 PT-DX-A-7 Populus trichocarpa cDNA clone WS0167_F19
3', mRNA sequence
Length = 864
Score = 42.1 bits (21), Expect = 0.016
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 171 aggcaacttcatcaagttcacggccatcggcgtgtacctggagga 215
|||||| ||||| ||||||||||| || || |||||| |||||||
Sbjct: 746 aggcaagttcataaagttcacggctataggagtgtacttggagga 702
>gb|CV237173.1|CV237173 WS01226.B21_I14 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01226_I14 3', mRNA sequence
Length = 842
Score = 42.1 bits (21), Expect = 0.016
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 171 aggcaacttcatcaagttcacggccatcggcgtgtacctggagga 215
|||||| ||||| ||||||||||| || || |||||| |||||||
Sbjct: 744 aggcaagttcataaagttcacggctataggagtgtacttggagga 700
>gb|CV242511.1|CV242511 WS02515.B21_E05 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02515_E05 3', mRNA sequence
Length = 847
Score = 42.1 bits (21), Expect = 0.016
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 171 aggcaacttcatcaagttcacggccatcggcgtgtacctggagga 215
|||||| ||||| ||||||||||| || || |||||| |||||||
Sbjct: 726 aggcaagttcataaagttcacggctataggagtgtacttggagga 682
>gb|CV242513.1|CV242513 WS02515.B21_E08 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02515_E08 3', mRNA sequence
Length = 845
Score = 42.1 bits (21), Expect = 0.016
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 171 aggcaacttcatcaagttcacggccatcggcgtgtacctggagga 215
|||||| ||||| ||||||||||| || || |||||| |||||||
Sbjct: 745 aggcaagttcataaagttcacggctataggagtgtacttggagga 701
>gb|CV242526.1|CV242526 WS02515.B21_E22 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02515_E22 3', mRNA sequence
Length = 865
Score = 42.1 bits (21), Expect = 0.016
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 171 aggcaacttcatcaagttcacggccatcggcgtgtacctggagga 215
|||||| ||||| ||||||||||| || || |||||| |||||||
Sbjct: 745 aggcaagttcataaagttcacggctataggagtgtacttggagga 701
>gb|CV243712.1|CV243712 WS0252.B21_K08 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0252_K08 3', mRNA sequence
Length = 892
Score = 42.1 bits (21), Expect = 0.016
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 171 aggcaacttcatcaagttcacggccatcggcgtgtacctggagga 215
|||||| ||||| ||||||||||| || || |||||| |||||||
Sbjct: 746 aggcaagttcataaagttcacggctataggagtgtacttggagga 702
>gb|CV245654.1|CV245654 WS0259.B21_A10 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0259_A10 3', mRNA sequence
Length = 757
Score = 42.1 bits (21), Expect = 0.016
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 171 aggcaacttcatcaagttcacggccatcggcgtgtacctggagga 215
|||||| ||||| ||||||||||| || || |||||| |||||||
Sbjct: 740 aggcaagttcataaagttcacggctataggagtgtacttggagga 696
>gb|CV254935.1|CV254935 WS02411.B21_J19 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02411_J19 3', mRNA sequence
Length = 881
Score = 42.1 bits (21), Expect = 0.016
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 171 aggcaacttcatcaagttcacggccatcggcgtgtacctggagga 215
|||||| ||||| ||||||||||| || || |||||| |||||||
Sbjct: 747 aggcaagttcataaagttcacggctataggagtgtacttggagga 703
>gb|CV256396.1|CV256396 WS0243.B21_L18 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0243_L18 3', mRNA sequence
Length = 760
Score = 42.1 bits (21), Expect = 0.016
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 171 aggcaacttcatcaagttcacggccatcggcgtgtacctggagga 215
|||||| ||||| ||||||||||| || || |||||| |||||||
Sbjct: 748 aggcaagttcataaagttcacggctataggagtgtacttggagga 704
>gb|CV267241.1|CV267241 WS02031.B21_D11 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02031_D11 3', mRNA sequence
Length = 881
Score = 42.1 bits (21), Expect = 0.016
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 171 aggcaacttcatcaagttcacggccatcggcgtgtacctggagga 215
|||||| ||||| ||||||||||| || || |||||| |||||||
Sbjct: 745 aggcaagttcataaagttcacggctataggagtgtacttggagga 701
>gb|CV274419.1|CV274419 WS0173.B21_D15 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS0173_D15 3', mRNA sequence
Length = 796
Score = 42.1 bits (21), Expect = 0.016
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 171 aggcaacttcatcaagttcacggccatcggcgtgtacctggagga 215
|||||| ||||| ||||||||||| || || |||||| |||||||
Sbjct: 662 aggcaagttcataaagttcacggctataggagtgtacttggagga 618
>gb|CX169758.1|CX169758 D07_69-49_07.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 680
Score = 42.1 bits (21), Expect = 0.016
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 171 aggcaacttcatcaagttcacggccatcggcgtgtacctggagga 215
|||||| ||||| ||||||||||| || || |||||| |||||||
Sbjct: 131 aggcaagttcataaagttcacggctataggagtgtacttggagga 175
>gb|CX170168.1|CX170168 C06_69-47_06.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 656
Score = 42.1 bits (21), Expect = 0.016
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 171 aggcaacttcatcaagttcacggccatcggcgtgtacctggagga 215
|||||| ||||| ||||||||||| || || |||||| |||||||
Sbjct: 150 aggcaagttcataaagttcacggctataggagtgtacttggagga 194
>gb|CX174673.1|CX174673 G10_69-32_14.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 506
Score = 42.1 bits (21), Expect = 0.016
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 171 aggcaacttcatcaagttcacggccatcggcgtgtacctggagga 215
|||||| ||||| ||||||||||| || || |||||| |||||||
Sbjct: 43 aggcaagttcataaagttcacggctataggagtgtacttggagga 87
>gb|DN492237.1|DN492237 V057F01.3pR Populus male catkins cDNA library Populus trichocarpa
cDNA clone V057F01 3', mRNA sequence
Length = 812
Score = 42.1 bits (21), Expect = 0.016
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 171 aggcaacttcatcaagttcacggccatcggcgtgtacctggagga 215
|||||| ||||| ||||||||||| || || |||||| |||||||
Sbjct: 628 aggcaagttcataaagttcacggctataggagtgtacttggagga 584
>gb|DT470758.1|DT470758 WS01210.BR_M01 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01210_M01 5', mRNA sequence
Length = 695
Score = 42.1 bits (21), Expect = 0.016
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 171 aggcaacttcatcaagttcacggccatcggcgtgtacctggagga 215
|||||| ||||| ||||||||||| || || |||||| |||||||
Sbjct: 153 aggcaagttcataaagttcacggctataggagtgtacttggagga 197
>gb|DT471394.1|DT471394 WS01213.BR_K18 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01213_K18 5', mRNA sequence
Length = 666
Score = 42.1 bits (21), Expect = 0.016
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 171 aggcaacttcatcaagttcacggccatcggcgtgtacctggagga 215
|||||| ||||| ||||||||||| || || |||||| |||||||
Sbjct: 153 aggcaagttcataaagttcacggctataggagtgtacttggagga 197
>gb|DT471446.1|DT471446 WS01213.BR_N24 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01213_N24 5', mRNA sequence
Length = 672
Score = 42.1 bits (21), Expect = 0.016
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 171 aggcaacttcatcaagttcacggccatcggcgtgtacctggagga 215
|||||| ||||| ||||||||||| || || |||||| |||||||
Sbjct: 151 aggcaagttcataaagttcacggctataggagtgtacttggagga 195
>gb|DT472419.1|DT472419 WS01226.BR.1_I14 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01226_I14 5', mRNA sequence
Length = 896
Score = 42.1 bits (21), Expect = 0.016
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 171 aggcaacttcatcaagttcacggccatcggcgtgtacctggagga 215
|||||| ||||| ||||||||||| || || |||||| |||||||
Sbjct: 154 aggcaagttcataaagttcacggctataggagtgtacttggagga 198
>gb|DT473912.1|DT473912 WS01230.BR_C05 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01230_C05 5', mRNA sequence
Length = 871
Score = 42.1 bits (21), Expect = 0.016
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 171 aggcaacttcatcaagttcacggccatcggcgtgtacctggagga 215
|||||| ||||| ||||||||||| || || |||||| |||||||
Sbjct: 147 aggcaagttcataaagttcacggctataggagtgtacttggagga 191
>gb|DT476592.1|DT476592 WS01230.B21_C05 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01230_C05 3', mRNA sequence
Length = 900
Score = 42.1 bits (21), Expect = 0.016
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 171 aggcaacttcatcaagttcacggccatcggcgtgtacctggagga 215
|||||| ||||| ||||||||||| || || |||||| |||||||
Sbjct: 767 aggcaagttcataaagttcacggctataggagtgtacttggagga 723
>gb|DT477112.1|DT477112 WS02519.BR_A01 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02519_A01 5', mRNA sequence
Length = 829
Score = 42.1 bits (21), Expect = 0.016
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 171 aggcaacttcatcaagttcacggccatcggcgtgtacctggagga 215
|||||| ||||| ||||||||||| || || |||||| |||||||
Sbjct: 122 aggcaagttcataaagttcacggctataggagtgtacttggagga 166
>gb|DT482137.1|DT482137 WS02519.B21_A01 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02519_A01 3', mRNA sequence
Length = 847
Score = 42.1 bits (21), Expect = 0.016
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 171 aggcaacttcatcaagttcacggccatcggcgtgtacctggagga 215
|||||| ||||| ||||||||||| || || |||||| |||||||
Sbjct: 726 aggcaagttcataaagttcacggctataggagtgtacttggagga 682
>gb|DT508470.1|DT508470 WS02421.BR_B02 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02421_B02 5', mRNA sequence
Length = 867
Score = 42.1 bits (21), Expect = 0.016
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 171 aggcaacttcatcaagttcacggccatcggcgtgtacctggagga 215
|||||| ||||| ||||||||||| || || |||||| |||||||
Sbjct: 135 aggcaagttcataaagttcacggctataggagtgtacttggagga 179
>gb|DT510453.1|DT510453 WS02426.BR_J13 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02426_J13 5', mRNA sequence
Length = 731
Score = 42.1 bits (21), Expect = 0.016
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 171 aggcaacttcatcaagttcacggccatcggcgtgtacctggagga 215
|||||| ||||| ||||||||||| || || |||||| |||||||
Sbjct: 144 aggcaagttcataaagttcacggctataggagtgtacttggagga 188
>gb|DT513079.1|DT513079 WS02421.B21_B02 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02421_B02 3', mRNA sequence
Length = 850
Score = 42.1 bits (21), Expect = 0.016
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 171 aggcaacttcatcaagttcacggccatcggcgtgtacctggagga 215
|||||| ||||| ||||||||||| || || |||||| |||||||
Sbjct: 746 aggcaagttcataaagttcacggctataggagtgtacttggagga 702
>gb|DT515080.1|DT515080 WS02426.B21_J13 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02426_J13 3', mRNA sequence
Length = 866
Score = 42.1 bits (21), Expect = 0.016
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 171 aggcaacttcatcaagttcacggccatcggcgtgtacctggagga 215
|||||| ||||| ||||||||||| || || |||||| |||||||
Sbjct: 745 aggcaagttcataaagttcacggctataggagtgtacttggagga 701
>gb|DT517112.1|DT517112 WS02433.B21_F12 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02433_F12 3', mRNA sequence
Length = 844
Score = 42.1 bits (21), Expect = 0.016
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 171 aggcaacttcatcaagttcacggccatcggcgtgtacctggagga 215
|||||| ||||| ||||||||||| || || |||||| |||||||
Sbjct: 745 aggcaagttcataaagttcacggctataggagtgtacttggagga 701
>gb|DT525812.1|DT525812 WS02046.C21_F18 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02046_F18 3', mRNA sequence
Length = 868
Score = 42.1 bits (21), Expect = 0.016
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 171 aggcaacttcatcaagttcacggccatcggcgtgtacctggagga 215
|||||| ||||| ||||||||||| || || |||||| |||||||
Sbjct: 730 aggcaagttcataaagttcacggctataggagtgtacttggagga 774
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 23,172
Number of Sequences: 369679
Number of extensions: 23172
Number of successful extensions: 6258
Number of sequences better than 0.5: 45
Number of HSP's better than 0.5 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6172
Number of HSP's gapped (non-prelim): 86
length of query: 407
length of database: 203,408,664
effective HSP length: 18
effective length of query: 389
effective length of database: 196,754,442
effective search space: 76537477938
effective search space used: 76537477938
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)