BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3276201.2.1
(1827 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CK319242.1|CK319242 X9P08e04 Populus stem seasonal libra... 40 0.29
gb|CV245157.1|CV245157 WS0256.B21_K04 PT-MB-N-A-15 Populus ... 40 0.29
gb|CV251963.1|CV251963 WS0118.B21_N16 PT-P-FL-A-2 Populus t... 40 0.29
gb|BP929870.1|BP929870 BP929870 full-length enriched poplar... 40 0.29
gb|BP932753.1|BP932753 BP932753 full-length enriched poplar... 40 0.29
gb|BP933235.1|BP933235 BP933235 full-length enriched poplar... 40 0.29
gb|DT517857.1|DT517857 WS02435.B21_I04 PTxD-ICC-N-A-14 Popu... 40 0.29
>gb|CK319242.1|CK319242 X9P08e04 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 460
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1369 ggtggagctccacctgcccc 1388
||||||||||||||||||||
Sbjct: 410 ggtggagctccacctgcccc 429
>gb|CV245157.1|CV245157 WS0256.B21_K04 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0256_K04
3', mRNA sequence
Length = 928
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1369 ggtggagctccacctgcccc 1388
||||||||||||||||||||
Sbjct: 473 ggtggagctccacctgcccc 454
>gb|CV251963.1|CV251963 WS0118.B21_N16 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0118_N16
3', mRNA sequence
Length = 701
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1369 ggtggagctccacctgcccc 1388
||||||||||||||||||||
Sbjct: 285 ggtggagctccacctgcccc 266
>gb|BP929870.1|BP929870 BP929870 full-length enriched poplar cDNA library Populus nigra cDNA
clone PnFL1-002_M16.r 3', mRNA sequence
Length = 664
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1369 ggtggagctccacctgcccc 1388
||||||||||||||||||||
Sbjct: 316 ggtggagctccacctgcccc 297
>gb|BP932753.1|BP932753 BP932753 full-length enriched poplar cDNA library Populus nigra cDNA
clone PnFL1-040_I22.r 3', mRNA sequence
Length = 537
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1369 ggtggagctccacctgcccc 1388
||||||||||||||||||||
Sbjct: 313 ggtggagctccacctgcccc 294
>gb|BP933235.1|BP933235 BP933235 full-length enriched poplar cDNA library Populus nigra cDNA
clone PnFL1-049_A13.r 3', mRNA sequence
Length = 600
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1369 ggtggagctccacctgcccc 1388
||||||||||||||||||||
Sbjct: 314 ggtggagctccacctgcccc 295
>gb|DT517857.1|DT517857 WS02435.B21_I04 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02435_I04 3', mRNA sequence
Length = 927
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1369 ggtggagctccacctgcccc 1388
||||||||||||||||||||
Sbjct: 311 ggtggagctccacctgcccc 292
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 151,912
Number of Sequences: 369679
Number of extensions: 151912
Number of successful extensions: 41920
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41901
Number of HSP's gapped (non-prelim): 19
length of query: 1827
length of database: 203,408,664
effective HSP length: 20
effective length of query: 1807
effective length of database: 196,015,084
effective search space: 354199256788
effective search space used: 354199256788
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)