BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3276111.2.1
         (1393 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BU863057.1|BU863057  S023C10 Populus imbibed seed cDNA li...    40   0.22 
gb|BU863311.1|BU863311  S026E10 Populus imbibed seed cDNA li...    40   0.22 
gb|CA932255.1|CA932255  MTU5CS.P10.F06 Aspen stem cDNA Libra...    40   0.22 
gb|CF119151.1|CF119151  MTU10CS.P14.B07 Aspen stem cDNA Libr...    40   0.22 

>gb|BU863057.1|BU863057 S023C10 Populus imbibed seed cDNA library Populus tremula cDNA 5
           prime, mRNA sequence
          Length = 693

 Score = 40.1 bits (20), Expect = 0.22
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 396 atcctcctccgccgctgccg 415
           ||||||||||||||||||||
Sbjct: 331 atcctcctccgccgctgccg 350



>gb|BU863311.1|BU863311 S026E10 Populus imbibed seed cDNA library Populus tremula cDNA 5
           prime, mRNA sequence
          Length = 458

 Score = 40.1 bits (20), Expect = 0.22
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 396 atcctcctccgccgctgccg 415
           ||||||||||||||||||||
Sbjct: 336 atcctcctccgccgctgccg 355



>gb|CA932255.1|CA932255 MTU5CS.P10.F06 Aspen stem cDNA Library Populus tremuloides cDNA,
           mRNA sequence
          Length = 423

 Score = 40.1 bits (20), Expect = 0.22
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 396 atcctcctccgccgctgccg 415
           ||||||||||||||||||||
Sbjct: 35  atcctcctccgccgctgccg 54



>gb|CF119151.1|CF119151 MTU10CS.P14.B07 Aspen stem cDNA Library Populus tremuloides cDNA,
           mRNA sequence
          Length = 420

 Score = 40.1 bits (20), Expect = 0.22
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 396 atcctcctccgccgctgccg 415
           ||||||||||||||||||||
Sbjct: 389 atcctcctccgccgctgccg 370



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 117,727
Number of Sequences: 369679
Number of extensions: 117727
Number of successful extensions: 25548
Number of sequences better than  0.5: 4
Number of HSP's better than  0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 25540
Number of HSP's gapped (non-prelim): 8
length of query: 1393
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1374
effective length of database: 196,384,763
effective search space: 269832664362
effective search space used: 269832664362
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)