BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3204680.2.1
(672 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN520678.1|CN520678 GQ0105.B3_G08 GQ010 Populus trichoca... 92 3e-017
gb|DT516698.1|DT516698 WS02432.B21_C13 PTxD-ICC-N-A-14 Popu... 92 3e-017
gb|BU862883.1|BU862883 S021B03 Populus imbibed seed cDNA li... 84 8e-015
gb|BU865374.1|BU865374 S052H04 Populus imbibed seed cDNA li... 84 8e-015
gb|CF234427.1|CF234427 Ptajxojxo2E10E1010 Poplar cDNA libra... 84 8e-015
gb|CK102426.1|CK102426 G077P24.5pR Populus tension wood cDN... 84 8e-015
gb|CX657151.1|CX657151 PO02030H12 Poplar SC cDNA library Po... 76 2e-012
gb|BU894809.1|BU894809 X015C11 Populus wood cDNA library Po... 62 3e-008
gb|CK088015.1|CK088015 A031P29.3pR Hybrid aspen plasmid lib... 60 1e-007
gb|CV255453.1|CV255453 WS02414.B21_A22 PTxD-ICC-N-A-14 Popu... 58 5e-007
gb|DT479200.1|DT479200 WS02525.BR_A24 PT-MB-N-A-15 Populus ... 58 5e-007
gb|DT484312.1|DT484312 WS02525.B21_A24 PT-MB-N-A-15 Populus... 58 5e-007
gb|DT508385.1|DT508385 WS02420.BR_N08 PTxD-ICC-N-A-14 Popul... 58 5e-007
gb|DT512995.1|DT512995 WS02420.B21_N08 PTxD-ICC-N-A-14 Popu... 58 5e-007
gb|AI163062.1|AI163062 A031p29u Hybrid aspen plasmid librar... 52 3e-005
gb|BU897901.1|BU897901 X071F05 Populus wood cDNA library Po... 52 3e-005
gb|CA929578.1|CA929578 MTU2CA.P15.G03 Aspen apex cDNA Libra... 52 3e-005
gb|AJ776291.1|AJ776291 AJ776291 Populus euphratica root 3-6... 52 3e-005
gb|CK087727.1|CK087727 A019P11.3pR Hybrid aspen plasmid lib... 48 4e-004
gb|CN522880.1|CN522880 GQ0122.B3_M23 GQ012 Populus trichoca... 48 4e-004
gb|CX182528.1|CX182528 H02_45-85_16.ab1 leaf inoculated wit... 48 4e-004
gb|CX656688.1|CX656688 PO02022C11 Poplar SC cDNA library Po... 48 4e-004
gb|BU821072.1|BU821072 UB18CPG01 Populus tremula cambium cD... 46 0.002
gb|CV272891.1|CV272891 WS0171.B21_A11 PTxD-NR-A-8 Populus t... 44 0.007
emb|AJ937747.1| Populus x Canadensis mRNA for osmosensor hi... 44 0.007
gb|CX658497.1|CX658497 PO01035G05 Poplar SC cDNA library Po... 40 0.11
gb|BU883774.1|BU883774 R001B12 Populus root cDNA library Po... 38 0.42
gb|CK098772.1|CK098772 A031P29.5pR Hybrid aspen plasmid lib... 38 0.42
gb|CX169778.1|CX169778 C10_69-115_06.ab1 leaf inoculated wi... 38 0.42
gb|CX175910.1|CX175910 F04_69-109_12.ab1 leaf inoculated wi... 38 0.42
gb|DN497458.1|DN497458 R001B12.5pR Populus root cDNA librar... 38 0.42
gb|DR448910.1|DR448910 qi3 Populus simonii Carr Populus sim... 38 0.42
>gb|CN520678.1|CN520678 GQ0105.B3_G08 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0105_G08 5', mRNA sequence
Length = 757
Score = 91.7 bits (46), Expect = 3e-017
Identities = 106/126 (84%)
Strand = Plus / Plus
Query: 157 aaggggttctttattgaaccaactattattactgatatcaccacatcaatggaaatctgg 216
||||| |||||| |||||||||| || ||||||||| | || || || ||| ||||||||
Sbjct: 293 aagggattctttgttgaaccaaccatcattactgatgtaacgacctccatgcaaatctgg 352
Query: 217 agggaggaagtctttggtccagtcctgtgcgttaaagaatttagcactgaagatgaagcc 276
|| || ||||| ||||| || || ||||| |||||| |||||| |||||||||||||||
Sbjct: 353 agagaagaagtttttgggcctgttctgtgtgttaaaacatttagtactgaagatgaagcc 412
Query: 277 atcgaa 282
||||||
Sbjct: 413 atcgaa 418
Score = 52.0 bits (26), Expect = 3e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 28 gaagagggttgcaggcttgggccagttgttagtgaaggacagtatgagaa 77
||||| ||||| |||||||| || |||||||||| ||| |||||||||||
Sbjct: 164 gaagaaggttgtaggcttggcccggttgttagtggagggcagtatgagaa 213
Score = 48.1 bits (24), Expect = 4e-004
Identities = 120/152 (78%)
Strand = Plus / Plus
Query: 403 tgcttctgccaagctccctggggcgggaacaagcgcagtggatttggacgtgagcttgga 462
|||||||| || ||||| ||||| || | ||||||||||| ||||| ||||| | |||
Sbjct: 539 tgcttctgtcaggctccatggggaggcattaagcgcagtggttttgggcgtgaattagga 598
Query: 463 gaagggggcattgataactacctgagcgtcaagcaagtcacggagtacatctctgatgag 522
||| |||| |||| || ||| |||| || ||||| || ||| | || || ||||||||
Sbjct: 599 gaatggggacttgaaaattacttgagtgtgaagcaggtaacgcaatatatatctgatgaa 658
Query: 523 ccgtggggatggtaccaatccccctccaagct 554
|| ||||| |||||||| || ||| |||||||
Sbjct: 659 ccatggggttggtaccagtctcccgccaagct 690
>gb|DT516698.1|DT516698 WS02432.B21_C13 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02432_C13 3', mRNA sequence
Length = 914
Score = 91.7 bits (46), Expect = 3e-017
Identities = 106/126 (84%)
Strand = Plus / Minus
Query: 157 aaggggttctttattgaaccaactattattactgatatcaccacatcaatggaaatctgg 216
||||| |||||| |||||||||| || ||||||||| | || || || ||| ||||||||
Sbjct: 703 aagggattctttgttgaaccaaccatcattactgatgtaacgacctccatgcaaatctgg 644
Query: 217 agggaggaagtctttggtccagtcctgtgcgttaaagaatttagcactgaagatgaagcc 276
|| || ||||| ||||| || || ||||| |||||| |||||| |||||||||||||||
Sbjct: 643 agagaagaagtttttgggcctgttctgtgtgttaaaacatttagtactgaagatgaagcc 584
Query: 277 atcgaa 282
||||||
Sbjct: 583 atcgaa 578
Score = 52.0 bits (26), Expect = 3e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 28 gaagagggttgcaggcttgggccagttgttagtgaaggacagtatgagaa 77
||||| ||||| |||||||| || |||||||||| ||| |||||||||||
Sbjct: 832 gaagaaggttgtaggcttggccctgttgttagtggagggcagtatgagaa 783
Score = 48.1 bits (24), Expect = 4e-004
Identities = 120/152 (78%)
Strand = Plus / Minus
Query: 403 tgcttctgccaagctccctggggcgggaacaagcgcagtggatttggacgtgagcttgga 462
|||||||| || ||||| ||||| || | ||||||||||| ||||| ||||| | |||
Sbjct: 457 tgcttctgtcaggctccatggggaggcattaagcgcagtggttttgggcgtgaattagga 398
Query: 463 gaagggggcattgataactacctgagcgtcaagcaagtcacggagtacatctctgatgag 522
||| |||| |||| || ||| |||| || ||||| || ||| | || || ||||||||
Sbjct: 397 gaatggggacttgaaaattacttgagtgtgaagcaggtaacgcaatatatatctgatgaa 338
Query: 523 ccgtggggatggtaccaatccccctccaagct 554
|| ||||| |||||||| || ||| |||||||
Sbjct: 337 ccatggggttggtaccagtctcccgccaagct 306
>gb|BU862883.1|BU862883 S021B03 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 422
Score = 83.8 bits (42), Expect = 8e-015
Identities = 105/126 (83%)
Strand = Plus / Plus
Query: 157 aaggggttctttattgaaccaactattattactgatatcaccacatcaatggaaatctgg 216
||||| |||||| |||||||||| || ||||||||| | || || || ||| ||||||||
Sbjct: 149 aagggattctttgttgaaccaaccatcattactgatgtaacgacctccatgcaaatctgg 208
Query: 217 agggaggaagtctttggtccagtcctgtgcgttaaagaatttagcactgaagatgaagcc 276
|| || ||||| ||||| || || ||||| |||||| |||||| ||||||||||||||
Sbjct: 209 agagaagaagtttttgggcctgttctgtgtgttaaaacatttagttctgaagatgaagcc 268
Query: 277 atcgaa 282
||||||
Sbjct: 269 atcgaa 274
Score = 56.0 bits (28), Expect = 2e-006
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 26 ttgaagagggttgcaggcttgggccagttgttagtgaaggacagtatgagaa 77
||||||| ||||| |||||||| || |||||||||| ||| |||||||||||
Sbjct: 18 ttgaagaaggttgtaggcttggcccggttgttagtggagggcagtatgagaa 69
>gb|BU865374.1|BU865374 S052H04 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 433
Score = 83.8 bits (42), Expect = 8e-015
Identities = 105/126 (83%)
Strand = Plus / Plus
Query: 157 aaggggttctttattgaaccaactattattactgatatcaccacatcaatggaaatctgg 216
||||| |||||| |||||||||| || ||||||||| | || || || ||| ||||||||
Sbjct: 119 aagggattctttgttgaaccaaccatcattactgatgtaacgacctccatgcaaatctgg 178
Query: 217 agggaggaagtctttggtccagtcctgtgcgttaaagaatttagcactgaagatgaagcc 276
|| || ||||| ||||| || || ||||| |||||| |||||| ||||||||||||||
Sbjct: 179 agagaagaagtttttgggcctgttctgtgtgttaaaacatttagttctgaagatgaagcc 238
Query: 277 atcgaa 282
||||||
Sbjct: 239 atcgaa 244
>gb|CF234427.1|CF234427 Ptajxojxo2E10E1010 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 655
Score = 83.8 bits (42), Expect = 8e-015
Identities = 105/126 (83%)
Strand = Plus / Plus
Query: 157 aaggggttctttattgaaccaactattattactgatatcaccacatcaatggaaatctgg 216
||||| |||||| |||||||||| || ||||||||| | || || || ||| ||||||||
Sbjct: 31 aagggattctttgttgaaccaacaatcattactgatgtaacgacctccatgcaaatctgg 90
Query: 217 agggaggaagtctttggtccagtcctgtgcgttaaagaatttagcactgaagatgaagcc 276
|| || ||||| ||||| || || ||||| |||||| |||||| ||||||||||||||
Sbjct: 91 agagaagaagtttttgggcctgttctgtgtgttaaaacatttagttctgaagatgaagcc 150
Query: 277 atcgaa 282
||||||
Sbjct: 151 atcgaa 156
Score = 48.1 bits (24), Expect = 4e-004
Identities = 120/152 (78%)
Strand = Plus / Plus
Query: 403 tgcttctgccaagctccctggggcgggaacaagcgcagtggatttggacgtgagcttgga 462
|||||||| || ||||| ||||| || | ||||||||||| ||||| || || | |||
Sbjct: 277 tgcttctgtcaggctccatggggaggcattaagcgcagtggttttgggcgagaattagga 336
Query: 463 gaagggggcattgataactacctgagcgtcaagcaagtcacggagtacatctctgatgag 522
||| |||| |||| || ||| |||| || ||||| || ||| | || |||||||||||
Sbjct: 337 gaatggggacttgaaaattacttgagtgtgaagcaggtaacgcaatatatctctgatgaa 396
Query: 523 ccgtggggatggtaccaatccccctccaagct 554
|| ||||| |||||||| || ||| |||||||
Sbjct: 397 ccatggggttggtaccagtctcccgccaagct 428
>gb|CK102426.1|CK102426 G077P24.5pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G077P24 5', mRNA sequence
Length = 501
Score = 83.8 bits (42), Expect = 8e-015
Identities = 105/126 (83%)
Strand = Plus / Plus
Query: 157 aaggggttctttattgaaccaactattattactgatatcaccacatcaatggaaatctgg 216
||||| |||||| |||||||||| || ||||||||| | || || || ||| ||||||||
Sbjct: 98 aagggattctttgttgaaccaaccatcattactgatgtaacgacctccatgcaaatctgg 157
Query: 217 agggaggaagtctttggtccagtcctgtgcgttaaagaatttagcactgaagatgaagcc 276
|| || ||||| ||||| || || ||||| |||||| |||||| ||||||||||||||
Sbjct: 158 agagaagaagtttttgggcctgttctgtgtgttaaaacatttagttctgaagatgaagcc 217
Query: 277 atcgaa 282
||||||
Sbjct: 218 atcgaa 223
>gb|CX657151.1|CX657151 PO02030H12 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02030H12 5', mRNA sequence
Length = 352
Score = 75.8 bits (38), Expect = 2e-012
Identities = 104/126 (82%)
Strand = Plus / Plus
Query: 157 aaggggttctttattgaaccaactattattactgatatcaccacatcaatggaaatctgg 216
||||| |||||| |||||||||| || ||||||||| | || || || ||| ||||||||
Sbjct: 155 aagggattctttgttgaaccaaccatcattactgatgtaacgacctccatgcaaatctgg 214
Query: 217 agggaggaagtctttggtccagtcctgtgcgttaaagaatttagcactgaagatgaagcc 276
|| || ||||| || || || || ||||| |||||| |||||| ||||||||||||||
Sbjct: 215 agagaagaagttttggggcctgttctgtgtgttaaaacatttagttctgaagatgaagcc 274
Query: 277 atcgaa 282
||||||
Sbjct: 275 atcgaa 280
Score = 52.0 bits (26), Expect = 3e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 28 gaagagggttgcaggcttgggccagttgttagtgaaggacagtatgagaa 77
||||| ||||| |||||||| || |||||||||| ||| |||||||||||
Sbjct: 26 gaagaaggttgtaggcttggcccggttgttagtggagggcagtatgagaa 75
>gb|BU894809.1|BU894809 X015C11 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 652
Score = 61.9 bits (31), Expect = 3e-008
Identities = 82/99 (82%)
Strand = Plus / Plus
Query: 184 attactgatatcaccacatcaatggaaatctggagggaggaagtctttggtccagtcctg 243
||||||||| | || || || ||| |||||||||| || ||||| ||||| || || |||
Sbjct: 3 attactgatgtaacgacctccatgcaaatctggagagaagaagtttttgggcctgttctg 62
Query: 244 tgcgttaaagaatttagcactgaagatgaagccatcgaa 282
|| |||||| |||||| ||||||||||||||||||||
Sbjct: 63 tgtgttaaaacatttagttctgaagatgaagccatcgaa 101
Score = 48.1 bits (24), Expect = 4e-004
Identities = 120/152 (78%)
Strand = Plus / Plus
Query: 403 tgcttctgccaagctccctggggcgggaacaagcgcagtggatttggacgtgagcttgga 462
|||||||| |||||||| ||||| || | ||||||||||| ||||| || || | |||
Sbjct: 222 tgcttctgtcaagctccatggggaggcattaagcgcagtggttttgggcgagaattagga 281
Query: 463 gaagggggcattgataactacctgagcgtcaagcaagtcacggagtacatctctgatgag 522
||| |||| | || || ||| |||| || ||||| || ||| | || |||||||||||
Sbjct: 282 gaatggggactcgaaaattacttgagtgtgaagcaggtaacgcaatatatctctgatgaa 341
Query: 523 ccgtggggatggtaccaatccccctccaagct 554
|| ||||| |||||||| || ||| |||||||
Sbjct: 342 ccatggggttggtaccagtctcccgccaagct 373
>gb|CK088015.1|CK088015 A031P29.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A031P29 3', mRNA sequence
Length = 611
Score = 60.0 bits (30), Expect = 1e-007
Identities = 99/122 (81%)
Strand = Plus / Minus
Query: 157 aaggggttctttattgaaccaactattattactgatatcaccacatcaatggaaatctgg 216
||||| |||||| |||||||||| || || | |||| | || || || ||| ||||||||
Sbjct: 604 aagggattctttgttgaaccaaccatcatcattgatgtaacgacctccatgcaaatctgg 545
Query: 217 agggaggaagtctttggtccagtcctgtgcgttaaagaatttagcactgaagatgaagcc 276
|| || ||||| ||||| || || || || |||||| |||||| |||||||||||||||
Sbjct: 544 agagaagaagtttttgggcctgttctatgtgttaaaacatttagtactgaagatgaagcc 485
Query: 277 at 278
||
Sbjct: 484 at 483
>gb|CV255453.1|CV255453 WS02414.B21_A22 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02414_A22 3', mRNA sequence
Length = 606
Score = 58.0 bits (29), Expect = 5e-007
Identities = 101/125 (80%)
Strand = Plus / Minus
Query: 157 aaggggttctttattgaaccaactattattactgatatcaccacatcaatggaaatctgg 216
||||| |||||| |||||||||| || || | |||| | || || || ||| ||||||||
Sbjct: 597 aagggattctttgttgaaccaaccatcatcattgatgtaacgacctccatgcaaatctgg 538
Query: 217 agggaggaagtctttggtccagtcctgtgcgttaaagaatttagcactgaagatgaagcc 276
|| || ||||| || || || || || || |||||| |||||| |||||||||||||||
Sbjct: 537 agagaagaagttttcgggcctgttctatgtgttaaaacatttagtactgaagatgaagcc 478
Query: 277 atcga 281
|||||
Sbjct: 477 atcga 473
Score = 42.1 bits (21), Expect = 0.027
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 403 tgcttctgccaagctccctggggcgggaacaagcgcagtggatttggacgtga 455
|||||||| |||||||| ||||| || | ||||||||||| ||||| |||||
Sbjct: 351 tgcttctgtcaagctccatggggaggcattaagcgcagtggttttgggcgtga 299
>gb|DT479200.1|DT479200 WS02525.BR_A24 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02525_A24 5', mRNA sequence
Length = 538
Score = 58.0 bits (29), Expect = 5e-007
Identities = 101/125 (80%)
Strand = Plus / Plus
Query: 157 aaggggttctttattgaaccaactattattactgatatcaccacatcaatggaaatctgg 216
||||| |||||| |||||||||| || || | |||| | || || || ||| ||||||||
Sbjct: 62 aagggattctttgttgaaccaaccatcatcattgatgtaacgacctccatgcaaatctgg 121
Query: 217 agggaggaagtctttggtccagtcctgtgcgttaaagaatttagcactgaagatgaagcc 276
|| || ||||| || || || || || || |||||| |||||| |||||||||||||||
Sbjct: 122 agagaagaagttttcgggcctgttctatgtgttaaaacatttagtactgaagatgaagcc 181
Query: 277 atcga 281
|||||
Sbjct: 182 atcga 186
Score = 42.1 bits (21), Expect = 0.027
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 403 tgcttctgccaagctccctggggcgggaacaagcgcagtggatttggacgtga 455
|||||||| |||||||| ||||| || | ||||||||||| ||||| |||||
Sbjct: 308 tgcttctgtcaagctccatggggaggcattaagcgcagtggttttgggcgtga 360
>gb|DT484312.1|DT484312 WS02525.B21_A24 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02525_A24 3', mRNA sequence
Length = 538
Score = 58.0 bits (29), Expect = 5e-007
Identities = 101/125 (80%)
Strand = Plus / Minus
Query: 157 aaggggttctttattgaaccaactattattactgatatcaccacatcaatggaaatctgg 216
||||| |||||| |||||||||| || || | |||| | || || || ||| ||||||||
Sbjct: 477 aagggattctttgttgaaccaaccatcatcattgatgtaacgacctccatgcaaatctgg 418
Query: 217 agggaggaagtctttggtccagtcctgtgcgttaaagaatttagcactgaagatgaagcc 276
|| || ||||| || || || || || || |||||| |||||| |||||||||||||||
Sbjct: 417 agagaagaagttttcgggcctgttctatgtgttaaaacatttagtactgaagatgaagcc 358
Query: 277 atcga 281
|||||
Sbjct: 357 atcga 353
Score = 42.1 bits (21), Expect = 0.027
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 403 tgcttctgccaagctccctggggcgggaacaagcgcagtggatttggacgtga 455
|||||||| |||||||| ||||| || | ||||||||||| ||||| |||||
Sbjct: 231 tgcttctgtcaagctccatggggaggcattaagcgcagtggttttgggcgtga 179
>gb|DT508385.1|DT508385 WS02420.BR_N08 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02420_N08 5', mRNA sequence
Length = 566
Score = 58.0 bits (29), Expect = 5e-007
Identities = 101/125 (80%)
Strand = Plus / Plus
Query: 157 aaggggttctttattgaaccaactattattactgatatcaccacatcaatggaaatctgg 216
||||| |||||| |||||||||| || || | |||| | || || || ||| ||||||||
Sbjct: 15 aagggattctttgttgaaccaaccatcatcattgatgtaacgacctccatgcaaatctgg 74
Query: 217 agggaggaagtctttggtccagtcctgtgcgttaaagaatttagcactgaagatgaagcc 276
|| || ||||| || || || || || || |||||| |||||| |||||||||||||||
Sbjct: 75 agagaagaagttttcgggcctgttctatgtgttaaaacatttagtactgaagatgaagcc 134
Query: 277 atcga 281
|||||
Sbjct: 135 atcga 139
Score = 42.1 bits (21), Expect = 0.027
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 403 tgcttctgccaagctccctggggcgggaacaagcgcagtggatttggacgtga 455
|||||||| |||||||| ||||| || | ||||||||||| ||||| |||||
Sbjct: 261 tgcttctgtcaagctccatggggaggcattaagcgcagtggttttgggcgtga 313
>gb|DT512995.1|DT512995 WS02420.B21_N08 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02420_N08 3', mRNA sequence
Length = 566
Score = 58.0 bits (29), Expect = 5e-007
Identities = 101/125 (80%)
Strand = Plus / Minus
Query: 157 aaggggttctttattgaaccaactattattactgatatcaccacatcaatggaaatctgg 216
||||| |||||| |||||||||| || || | |||| | || || || ||| ||||||||
Sbjct: 552 aagggattctttgttgaaccaaccatcatcattgatgtaacgacctccatgcaaatctgg 493
Query: 217 agggaggaagtctttggtccagtcctgtgcgttaaagaatttagcactgaagatgaagcc 276
|| || ||||| || || || || || || |||||| |||||| |||||||||||||||
Sbjct: 492 agagaagaagttttcgggcctgttctatgtgttaaaacatttagtactgaagatgaagcc 433
Query: 277 atcga 281
|||||
Sbjct: 432 atcga 428
Score = 42.1 bits (21), Expect = 0.027
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 403 tgcttctgccaagctccctggggcgggaacaagcgcagtggatttggacgtga 455
|||||||| |||||||| ||||| || | ||||||||||| ||||| |||||
Sbjct: 306 tgcttctgtcaagctccatggggaggcattaagcgcagtggttttgggcgtga 254
>gb|AI163062.1|AI163062 A031p29u Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 404
Score = 52.0 bits (26), Expect = 3e-005
Identities = 99/122 (81%), Gaps = 1/122 (0%)
Strand = Plus / Plus
Query: 157 aaggggttctttattgaaccaactattattactgatatcaccacatcaatggaaatctgg 216
||||| |||||| |||||||||| || || | |||| | || || || ||| ||||||||
Sbjct: 222 aagggattctttgttgaaccaaccatcatcattgatgtaacgacctccatgcaaatctgg 281
Query: 217 agggaggaagtctttggtccagtcctgtgcgttaaagaatttagcactgaagatgaagcc 276
|| || ||||| ||||| || || || || |||||| |||||| |||||||||||||||
Sbjct: 282 agagaagaagtttttgg-cctgttctatgtgttaaaacatttagtactgaagatgaagcc 340
Query: 277 at 278
||
Sbjct: 341 at 342
Score = 44.1 bits (22), Expect = 0.007
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 29 aagagggttgcaggcttgggccagttgttagtgaaggacagtatga 74
||||||||||||||||||| ||| |||| |||| || ||||||||
Sbjct: 94 aagagggttgcaggcttggcccacttgtcagtggagagcagtatga 139
>gb|BU897901.1|BU897901 X071F05 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 709
Score = 52.0 bits (26), Expect = 3e-005
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 209 aaatctggagggaggaagtctttggtccagtcctgtgcgttaaagaatttagcactgaag 268
|||||||||| || ||||| ||||| || || || || |||||| |||||| |||||||
Sbjct: 261 aaatctggagagaagaagtttttgggcctgttctatgtgttaaaacatttagtactgaag 320
Query: 269 atgaagccat 278
||||||||||
Sbjct: 321 atgaagccat 330
Score = 44.1 bits (22), Expect = 0.007
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 29 aagagggttgcaggcttgggccagttgttagtgaaggacagtatga 74
||||||||||||||||||| ||| |||| |||| || ||||||||
Sbjct: 80 aagagggttgcaggcttggcccacttgtcagtggagagcagtatga 125
>gb|CA929578.1|CA929578 MTU2CA.P15.G03 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 678
Score = 52.0 bits (26), Expect = 3e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 28 gaagagggttgcaggcttgggccagttgttagtgaaggacagtatgagaa 77
||||| ||||| |||||||| || |||||||||| ||| |||||||||||
Sbjct: 623 gaagaaggttgtaggcttggcccggttgttagtggagggcagtatgagaa 672
>gb|AJ776291.1|AJ776291 AJ776291 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400011D07F1, mRNA sequence
Length = 604
Score = 52.0 bits (26), Expect = 3e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 28 gaagagggttgcaggcttgggccagttgttagtgaaggacagtatgagaa 77
||||| ||||| |||||||| || |||||||||| ||| |||||||||||
Sbjct: 421 gaagaaggttgtaggcttggcccggttgttagtggagggcagtatgagaa 470
>gb|CK087727.1|CK087727 A019P11.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A019P11 3', mRNA sequence
Length = 608
Score = 48.1 bits (24), Expect = 4e-004
Identities = 120/152 (78%)
Strand = Plus / Minus
Query: 403 tgcttctgccaagctccctggggcgggaacaagcgcagtggatttggacgtgagcttgga 462
|||||||| || ||||| ||||| || | ||||||||||| ||||| || || | |||
Sbjct: 461 tgcttctgtcaggctccatggggaggcattaagcgcagtggttttgggcgagaattagga 402
Query: 463 gaagggggcattgataactacctgagcgtcaagcaagtcacggagtacatctctgatgag 522
||| |||| |||| || ||| |||| || ||||| || ||| | || |||||||||||
Sbjct: 401 gaatggggacttgaaaattacttgagtgtgaagcaggtaacgcaatatatctctgatgaa 342
Query: 523 ccgtggggatggtaccaatccccctccaagct 554
|| ||||| |||||||| || ||| |||||||
Sbjct: 341 ccatggggttggtaccagtctcccgccaagct 310
Score = 38.2 bits (19), Expect = 0.42
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 264 tgaagatgaagccatcgaa 282
|||||||||||||||||||
Sbjct: 600 tgaagatgaagccatcgaa 582
>gb|CN522880.1|CN522880 GQ0122.B3_M23 GQ012 Populus trichocarpa x Populus deltoides cDNA
clone GQ0122_M23 5', mRNA sequence
Length = 562
Score = 48.1 bits (24), Expect = 4e-004
Identities = 63/76 (82%)
Strand = Plus / Minus
Query: 380 tctgggtaaactgctcgcaaccctgcttctgccaagctccctggggcgggaacaagcgca 439
||||||| || ||||| || || |||||||| |||||||| ||||| || | |||||||
Sbjct: 303 tctgggtcaattgctcacagccatgcttctgtcaagctccatggggaggcattaagcgca 244
Query: 440 gtggatttggacgtga 455
|||| ||||| |||||
Sbjct: 243 gtggttttgggcgtga 228
Score = 46.1 bits (23), Expect = 0.002
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 255 atttagcactgaagatgaagccatcga 281
|||||| ||||||||||||||||||||
Sbjct: 428 atttagtactgaagatgaagccatcga 402
>gb|CX182528.1|CX182528 H02_45-85_16.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 478
Score = 48.1 bits (24), Expect = 4e-004
Identities = 120/152 (78%)
Strand = Plus / Plus
Query: 403 tgcttctgccaagctccctggggcgggaacaagcgcagtggatttggacgtgagcttgga 462
|||||||| || ||||| ||||| || | ||||||||||| ||||| ||||| | |||
Sbjct: 49 tgcttctgtcaggctccatggggaggcattaagcgcagtggttttgggcgtgaattagga 108
Query: 463 gaagggggcattgataactacctgagcgtcaagcaagtcacggagtacatctctgatgag 522
||| |||| |||| || ||| |||| || ||||| || ||| | || || ||||||||
Sbjct: 109 gaatggggacttgaaaattacttgagtgtgaagcaggtaacgcaatatatatctgatgaa 168
Query: 523 ccgtggggatggtaccaatccccctccaagct 554
|| ||||| |||||||| || ||| |||||||
Sbjct: 169 ccatggggttggtaccagtctcccgccaagct 200
>gb|CX656688.1|CX656688 PO02022C11 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02022C11 5', mRNA sequence
Length = 366
Score = 48.1 bits (24), Expect = 4e-004
Identities = 120/152 (78%)
Strand = Plus / Plus
Query: 403 tgcttctgccaagctccctggggcgggaacaagcgcagtggatttggacgtgagcttgga 462
|||||||| || ||||| ||||| || | ||||||||||| | ||| ||||| | |||
Sbjct: 81 tgcttctgtcaggctccatggggaggcattaagcgcagtggttctgggcgtgaattagga 140
Query: 463 gaagggggcattgataactacctgagcgtcaagcaagtcacggagtacatctctgatgag 522
||| |||| |||| || ||| |||| || ||||| || ||| | || |||||||||||
Sbjct: 141 gaatggggacttgaaaattacttgagtgtgaagcaggtaacgcaatatatctctgatgaa 200
Query: 523 ccgtggggatggtaccaatccccctccaagct 554
|| ||||| |||||||| || ||| |||||||
Sbjct: 201 ccatggggttggtaccagtctcccgccaagct 232
>gb|BU821072.1|BU821072 UB18CPG01 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 451
Score = 46.1 bits (23), Expect = 0.002
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 28 gaagagggttgcaggcttgggccagttgttagtgaaggacagtatga 74
|||||||||||||||||||| ||| |||| |||| || ||||||||
Sbjct: 343 gaagagggttgcaggcttggcccacttgtcagtggagatcagtatga 389
>gb|CV272891.1|CV272891 WS0171.B21_A11 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS0171_A11 3', mRNA sequence
Length = 464
Score = 44.1 bits (22), Expect = 0.007
Identities = 97/122 (79%)
Strand = Plus / Plus
Query: 433 aagcgcagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtc 492
||||||||||| ||||| ||||| | |||||| |||| |||| || ||| |||| ||
Sbjct: 24 aagcgcagtggttttgggcgtgaattaggagaatggggacttgaaaattacttgagtgtg 83
Query: 493 aagcaagtcacggagtacatctctgatgagccgtggggatggtaccaatccccctccaag 552
||||| || ||| | || || |||||||| || ||||| |||||||| || ||| |||||
Sbjct: 84 aagcaggtaacgcaatatatatctgatgaaccatggggttggtaccagtctcccgccaag 143
Query: 553 ct 554
||
Sbjct: 144 ct 145
>emb|AJ937747.1| Populus x Canadensis mRNA for osmosensor histidine-aspartate kinase
(hk1 gene)
Length = 4210
Score = 44.1 bits (22), Expect = 0.007
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 85 aagttcatatcgaatgccaaaagccaaggt 114
|||||||||||||| |||| ||||||||||
Sbjct: 677 aagttcatatcgaaggccagaagccaaggt 648
>gb|CX658497.1|CX658497 PO01035G05 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01035G05 5', mRNA sequence
Length = 504
Score = 40.1 bits (20), Expect = 0.11
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 511 atctctgatgagccgtggggatggtaccaatccccctccaagct 554
||||||||||| || ||||| |||||||| || ||| |||||||
Sbjct: 186 atctctgatgaaccatggggttggtaccagtctcccgccaagct 229
>gb|BU883774.1|BU883774 R001B12 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 715
Score = 38.2 bits (19), Expect = 0.42
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 255 atttagcactgaagatgaagcca 277
|||| ||||||||||||||||||
Sbjct: 344 attttgcactgaagatgaagcca 322
>gb|CK098772.1|CK098772 A031P29.5pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A031P29 5', mRNA sequence
Length = 159
Score = 38.2 bits (19), Expect = 0.42
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 29 aagagggttgcaggcttgg 47
|||||||||||||||||||
Sbjct: 89 aagagggttgcaggcttgg 107
>gb|CX169778.1|CX169778 C10_69-115_06.ab1 leaf inoculated with Marssonia pathogen of
Populus deltoides Populus deltoides cDNA, mRNA sequence
Length = 657
Score = 38.2 bits (19), Expect = 0.42
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 255 atttagcactgaagatgaagcca 277
|||| ||||||||||||||||||
Sbjct: 375 attttgcactgaagatgaagcca 353
>gb|CX175910.1|CX175910 F04_69-109_12.ab1 leaf inoculated with Marssonia pathogen of
Populus deltoides Populus deltoides cDNA, mRNA sequence
Length = 691
Score = 38.2 bits (19), Expect = 0.42
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 255 atttagcactgaagatgaagcca 277
|||| ||||||||||||||||||
Sbjct: 385 attttgcactgaagatgaagcca 363
>gb|DN497458.1|DN497458 R001B12.5pR Populus root cDNA library Populus tremula x Populus
tremuloides cDNA clone R001B12 5', mRNA sequence
Length = 361
Score = 38.2 bits (19), Expect = 0.42
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 255 atttagcactgaagatgaagcca 277
|||| ||||||||||||||||||
Sbjct: 267 attttgcactgaagatgaagcca 245
>gb|DR448910.1|DR448910 qi3 Populus simonii Carr Populus simonii cDNA similar to betaine
aldehyde dehydrogenase (BADH) of Populus simonii Carr,
mRNA sequence
Length = 1491
Score = 38.2 bits (19), Expect = 0.42
Identities = 91/115 (79%)
Strand = Plus / Plus
Query: 209 aaatctggagggaggaagtctttggtccagtcctgtgcgttaaagaatttagcactgaag 268
||||||||| |||||||| ||||| || || || || |||||| |||| |||||||
Sbjct: 1151 aaatctggatagaggaagtatttggacctgttctttgggttaaaacatttgcaactgaag 1210
Query: 269 atgaagccatcgaacttgccaacgatacacagtatggtttggctggtgctgtaat 323
|||||||| | ||||| || || ||||| || |||||| | |||| ||| |||||
Sbjct: 1211 atgaagccgttgaactggcaaatgatacccattatggtcttgctgctgcagtaat 1265
Score = 38.2 bits (19), Expect = 0.42
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 31 gagggttgcaggcttgggccagttgttagtgaaggacagtatgagaa 77
||||||||||||||||| || |||||||| | | |||||||||||
Sbjct: 973 gagggttgcaggcttggccctattgttagtcgacggcagtatgagaa 1019
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 74,483
Number of Sequences: 369679
Number of extensions: 74483
Number of successful extensions: 19113
Number of sequences better than 0.5: 32
Number of HSP's better than 0.5 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19053
Number of HSP's gapped (non-prelim): 59
length of query: 672
length of database: 203,408,664
effective HSP length: 19
effective length of query: 653
effective length of database: 196,384,763
effective search space: 128239250239
effective search space used: 128239250239
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)