BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3204472.2.1
(757 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA927406.1|CA927406 MTU6CR.P8.F04 Aspen root cDNA Librar... 76 2e-012
gb|BU865284.1|BU865284 S051E06 Populus imbibed seed cDNA li... 68 5e-010
gb|BU866197.1|BU866197 S063H03 Populus imbibed seed cDNA li... 68 5e-010
gb|BU893215.1|BU893215 P074G09 Populus petioles cDNA librar... 68 5e-010
gb|CF232558.1|CF232558 PtaJXO0011H4H0416 Poplar cDNA librar... 68 5e-010
gb|CF231175.1|CF231175 PtaC0018C7C0705 Poplar cDNA library ... 62 3e-008
gb|BU826636.1|BU826636 UK122TH12 Populus apical shoot cDNA ... 60 1e-007
gb|BU832161.1|BU832161 T030B03 Populus apical shoot cDNA li... 60 1e-007
gb|CX659340.1|CX659340 PO01029E03 Poplar SC cDNA library Po... 60 1e-007
gb|BU812637.1|BU812637 UL98TG02 Populus leaf cDNA library P... 58 5e-007
gb|DT522694.1|DT522694 WS02037.B21_L04 PTxN-IB-N-A-11 Popul... 58 5e-007
gb|BU862485.1|BU862485 S016C11 Populus imbibed seed cDNA li... 50 1e-004
gb|BU866707.1|BU866707 S069H02 Populus imbibed seed cDNA li... 50 1e-004
gb|BU866897.1|BU866897 S072A05 Populus imbibed seed cDNA li... 50 1e-004
gb|CF232862.1|CF232862 PtaJXO0016F8F0812 Poplar cDNA librar... 50 1e-004
gb|CF233657.1|CF233657 PtaJXO0026B3B0303 Poplar cDNA librar... 50 1e-004
gb|CF236318.1|CF236318 PtaJXT11D12D1208 Poplar cDNA library... 50 1e-004
gb|DN488621.1|DN488621 S016C11.3pR Populus imbibed seed cDN... 50 1e-004
gb|DN498314.1|DN498314 S016C11.5pR Populus imbibed seed cDN... 50 1e-004
gb|BI071607.1|BI071607 C060P75U Populus strain T89 leaves P... 46 0.002
gb|BU829974.1|BU829974 T002D07 Populus apical shoot cDNA li... 46 0.002
gb|BU878471.1|BU878471 V047G03 Populus flower cDNA library ... 46 0.002
gb|CX653969.1|CX653969 PO02011A02 Poplar SC cDNA library Po... 46 0.002
gb|CX655073.1|CX655073 PO01004E04 Poplar SC cDNA library Po... 46 0.002
gb|BP928728.1|BP928728 BP928728 full-length enriched poplar... 46 0.002
gb|DN492113.1|DN492113 V047G03.3pR Populus male catkins cDN... 46 0.002
gb|DN502055.1|DN502055 V047G03.5pR Populus male catkins cDN... 46 0.002
gb|DT508868.1|DT508868 WS02422.BR_C14 PTxD-ICC-N-A-14 Popul... 46 0.002
gb|DT513477.1|DT513477 WS02422.B21_C14 PTxD-ICC-N-A-14 Popu... 46 0.002
gb|BU866977.1|BU866977 S072H08 Populus imbibed seed cDNA li... 44 0.008
gb|BU867001.1|BU867001 S073B10 Populus imbibed seed cDNA li... 44 0.008
gb|CK095633.1|CK095633 UA17CPF12.3pR Populus dormant cambiu... 44 0.008
gb|CN520892.1|CN520892 GQ0107.B3_B21 GQ010 Populus trichoca... 44 0.008
gb|CN523304.1|CN523304 GQ015M01.B3_L01 GQ015 Populus tricho... 44 0.008
gb|CN549971.1|CN549971 GQ0243.B3_C07 GQ024 Populus trichoca... 44 0.008
gb|AJ773668.1|AJ773668 AJ773668 Populus euphratica shoot 3-... 44 0.008
gb|AJ773669.1|AJ773669 AJ773669 Populus euphratica shoot 3-... 44 0.008
gb|CV236170.1|CV236170 WS01223.B21_B16 PT-GT-FL-A-3 Populus... 44 0.008
gb|CV237332.1|CV237332 WS01227.B21.1_I01 PT-GT-FL-A-3 Popul... 44 0.008
gb|CV270106.1|CV270106 WS0151.B21_B16 PTxN-IB-A-6 Populus t... 44 0.008
gb|BP926448.1|BP926448 BP926448 full-length enriched poplar... 44 0.008
gb|DT472846.1|DT472846 WS01227.BR_I01 PT-GT-FL-A-3 Populus ... 44 0.008
gb|DT479295.1|DT479295 WS02525.BR_G07 PT-MB-N-A-15 Populus ... 44 0.008
gb|DT495090.1|DT495090 WS0112.BR_F17 PT-P-FL-A-2 Populus tr... 44 0.008
gb|DT517604.1|DT517604 WS02434.B21_M13 PTxD-ICC-N-A-14 Popu... 44 0.008
gb|DV466514.1|DV466514 MTUNUL1.P6.F09 NUL Populus fremontii... 44 0.008
gb|BU862546.1|BU862546 S017A09 Populus imbibed seed cDNA li... 42 0.030
gb|CF236335.1|CF236335 PtaJXT11E9E0909 Poplar cDNA library ... 42 0.030
gb|CV256088.1|CV256088 WS0242.B21_O11 PTxD-ICC-N-A-14 Popul... 42 0.030
gb|DN488925.1|DN488925 S058C02.3pR Populus imbibed seed cDN... 42 0.030
gb|DN498654.1|DN498654 S058C02.5pR Populus imbibed seed cDN... 42 0.030
gb|BU810156.1|BU810156 UL67A10 Populus leaf cDNA library Po... 40 0.12
gb|BU810918.1|BU810918 UL77PG05 Populus leaf cDNA library P... 40 0.12
gb|BU811013.1|BU811013 UL78TH08 Populus leaf cDNA library P... 40 0.12
gb|BU812392.1|BU812392 UL95TG07 Populus leaf cDNA library P... 40 0.12
gb|BU817238.1|BU817238 UA14CPE11 Populus tremula cambium cD... 40 0.12
gb|BU817498.1|BU817498 UA17CPF12 Populus tremula cambium cD... 40 0.12
gb|BU829855.1|BU829855 K068P91P Populus apical shoot cDNA l... 40 0.12
gb|BU862300.1|BU862300 S013H07 Populus imbibed seed cDNA li... 40 0.12
gb|BU864592.1|BU864592 S042E06 Populus imbibed seed cDNA li... 40 0.12
gb|BU864803.1|BU864803 S045B03 Populus imbibed seed cDNA li... 40 0.12
gb|BU866879.1|BU866879 S071G09 Populus imbibed seed cDNA li... 40 0.12
gb|BU867946.1|BU867946 M106C07 Populus flower cDNA library ... 40 0.12
gb|BU884092.1|BU884092 R005F08 Populus root cDNA library Po... 40 0.12
gb|BU884356.1|BU884356 R009E11 Populus root cDNA library Po... 40 0.12
gb|BU885695.1|BU885695 R034G07 Populus root cDNA library Po... 40 0.12
gb|BU885722.1|BU885722 R035C01 Populus root cDNA library Po... 40 0.12
gb|BU887830.1|BU887830 R067G07 Populus root cDNA library Po... 40 0.12
gb|BU887876.1|BU887876 R068E12 Populus root cDNA library Po... 40 0.12
gb|BU888042.1|BU888042 P002H09 Populus petioles cDNA librar... 40 0.12
gb|CA823039.1|CA823039 R19E12 two-month-old roots from clon... 40 0.12
gb|CK113298.1|CK113298 UR105TE09 Populus root cDNA library ... 40 0.12
gb|CV236471.1|CV236471 WS01224.B21.1_D19 PT-GT-FL-A-3 Popul... 40 0.12
gb|CV257020.1|CV257020 WS0245.B21_G24 PTxD-ICC-N-A-14 Popul... 40 0.12
gb|CV258272.1|CV258272 WS0249.B21_A23 PTxD-ICC-N-A-14 Popul... 40 0.12
gb|CV265667.1|CV265667 WS02027.B21_O12 PTxN-IB-N-A-11 Popul... 40 0.12
gb|CX175332.1|CX175332 E11_69-71_09.ab1 leaf inoculated wit... 40 0.12
gb|CX175750.1|CX175750 H03_69-53_15.ab1 leaf inoculated wit... 40 0.12
gb|CX176971.1|CX176971 F08_69-40_12.ab1 leaf inoculated wit... 40 0.12
gb|DT509990.1|DT509990 WS02425.BR_E18 PTxD-ICC-N-A-14 Popul... 40 0.12
gb|DT514611.1|DT514611 WS02425.B21_E18 PTxD-ICC-N-A-14 Popu... 40 0.12
gb|CA931589.1|CA931589 MTU2TA.P9.D04 Aspen apex cDNA Librar... 38 0.47
>gb|CA927406.1|CA927406 MTU6CR.P8.F04 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 616
Score = 75.8 bits (38), Expect = 2e-012
Identities = 125/154 (81%)
Strand = Plus / Plus
Query: 186 tccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagaggcggaactgct 245
|||||| ||||||||| |||||||||| ||||||||||||||||| ||||||||
Sbjct: 217 tccagatgatggagtaagtgtggaagtttcttgtggggtcgaaccagagatagaactgct 276
Query: 246 gctcccgctgcccctgcccccgcgtgaacacgttggtgtgcagcgtgtagggctcgccgg 305
|||| | | |||| |||| | |||||||| |||||||||| |||| || |||||||
Sbjct: 277 gctctctgtttcccttcccctgagtgaacacattggtgtgcaaaatgtaagggtcgccgg 336
Query: 306 acacgttgcccaggaactcgaagtcgatctcgtc 339
| ||| |||| |||||||||||||||||||||
Sbjct: 337 tgaggtttcccaagaactcgaagtcgatctcgtc 370
Score = 42.1 bits (21), Expect = 0.030
Identities = 45/54 (83%)
Strand = Plus / Plus
Query: 53 ccagtcgtccgcgttcaacangctggagtagagcngcatcngctggctcttggg 106
||||||||| |||||| | | ||||||||| | | |||| |||||||||||||
Sbjct: 83 ccagtcgtcggcgttccagaggctggagtaaatcctcatcggctggctcttggg 136
>gb|BU865284.1|BU865284 S051E06 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 584
Score = 67.9 bits (34), Expect = 5e-010
Identities = 124/154 (80%)
Strand = Plus / Minus
Query: 186 tccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagaggcggaactgct 245
|||||| ||||||||| |||||||||| |||||||| |||||||| ||||||||
Sbjct: 513 tccagatgatggagtaagtgtggaagtttcttgtggggtcaaaccagagatagaactgct 454
Query: 246 gctcccgctgcccctgcccccgcgtgaacacgttggtgtgcagcgtgtagggctcgccgg 305
|||| | | |||| |||| | |||||||| |||||||||| |||| || |||||||
Sbjct: 453 gctctctgtttcccttcccctgagtgaacacattggtgtgcaaaatgtaagggtcgccgg 394
Query: 306 acacgttgcccaggaactcgaagtcgatctcgtc 339
| ||| |||| |||||||||||||||||||||
Sbjct: 393 tgaggttccccaagaactcgaagtcgatctcgtc 360
>gb|BU866197.1|BU866197 S063H03 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 587
Score = 67.9 bits (34), Expect = 5e-010
Identities = 124/154 (80%)
Strand = Plus / Minus
Query: 186 tccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagaggcggaactgct 245
|||||| ||||||||| |||||||||| |||||||| |||||||| ||||||||
Sbjct: 522 tccagatgatggagtaagtgtggaagtttcttgtggggtcaaaccagagatagaactgct 463
Query: 246 gctcccgctgcccctgcccccgcgtgaacacgttggtgtgcagcgtgtagggctcgccgg 305
|||| | | |||| |||| | |||||||| |||||||||| |||| || |||||||
Sbjct: 462 gctctctgtttcccttcccctgagtgaacacattggtgtgcaaaatgtaagggtcgccgg 403
Query: 306 acacgttgcccaggaactcgaagtcgatctcgtc 339
| ||| |||| |||||||||||||||||||||
Sbjct: 402 tgaggttccccaagaactcgaagtcgatctcgtc 369
>gb|BU893215.1|BU893215 P074G09 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 603
Score = 67.9 bits (34), Expect = 5e-010
Identities = 124/154 (80%)
Strand = Plus / Minus
Query: 186 tccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagaggcggaactgct 245
|||||| ||||||||| |||||||||| |||||||| |||||||| ||||||||
Sbjct: 532 tccagatgatggagtaagtgtggaagtttcttgtggggtcaaaccagagatagaactgct 473
Query: 246 gctcccgctgcccctgcccccgcgtgaacacgttggtgtgcagcgtgtagggctcgccgg 305
|||| | | |||| |||| | |||||||| |||||||||| |||| || |||||||
Sbjct: 472 gctctctgtttcccttcccctgagtgaacacattggtgtgcaaaatgtaagggtcgccgg 413
Query: 306 acacgttgcccaggaactcgaagtcgatctcgtc 339
| ||| |||| |||||||||||||||||||||
Sbjct: 412 tgaggttccccaagaactcgaagtcgatctcgtc 379
>gb|CF232558.1|CF232558 PtaJXO0011H4H0416 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 636
Score = 67.9 bits (34), Expect = 5e-010
Identities = 124/154 (80%)
Strand = Plus / Minus
Query: 186 tccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagaggcggaactgct 245
|||||| ||||||||| |||||||||| |||||||| |||||||| ||||||||
Sbjct: 393 tccagatgatggagtaagtgtggaagtttcttgtggggtcaaaccagagatagaactgct 334
Query: 246 gctcccgctgcccctgcccccgcgtgaacacgttggtgtgcagcgtgtagggctcgccgg 305
|||| | | |||| |||| | |||||||| |||||||||| |||| || |||||||
Sbjct: 333 gctctctgtttcccttcccctgagtgaacacattggtgtgcaaaatgtaagggtcgccgg 274
Query: 306 acacgttgcccaggaactcgaagtcgatctcgtc 339
| ||| |||| |||||||||||||||||||||
Sbjct: 273 tgaggttccccaagaactcgaagtcgatctcgtc 240
Score = 42.1 bits (21), Expect = 0.030
Identities = 46/54 (85%)
Strand = Plus / Minus
Query: 53 ccagtcgtccgcgttcaacangctggagtagagcngcatcngctggctcttggg 106
||||||||| |||||| | | ||||||||| | || |||| |||||||||||||
Sbjct: 610 ccagtcgtcggcgttccagaggctggagtaaatcntcatcggctggctcttggg 557
>gb|CF231175.1|CF231175 PtaC0018C7C0705 Poplar cDNA library from cambial zone Populus alba
x Populus tremula cDNA 5', mRNA sequence
Length = 733
Score = 61.9 bits (31), Expect = 3e-008
Identities = 123/154 (79%)
Strand = Plus / Minus
Query: 186 tccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagaggcggaactgct 245
|||||| ||||||||| |||||||||| |||||||| |||||||| |||||| |
Sbjct: 533 tccagatgatggagtaagtgtggaagtttcttgtggggtcaaaccagagatagaactgnt 474
Query: 246 gctcccgctgcccctgcccccgcgtgaacacgttggtgtgcagcgtgtagggctcgccgg 305
|||| | | |||| |||| | |||||||| |||||||||| |||| || |||||||
Sbjct: 473 gctctctgtttcccttcccctgagtgaacacattggtgtgcaaaatgtaagggtcgccgg 414
Query: 306 acacgttgcccaggaactcgaagtcgatctcgtc 339
| ||| |||| |||||||||||||||||||||
Sbjct: 413 tgaggttccccaagaactcgaagtcgatctcgtc 380
>gb|BU826636.1|BU826636 UK122TH12 Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 676
Score = 60.0 bits (30), Expect = 1e-007
Identities = 123/154 (79%)
Strand = Plus / Minus
Query: 186 tccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagaggcggaactgct 245
|||||| ||||||||| |||||||||| |||||||| |||||||| ||||||||
Sbjct: 538 tccagatgatggagtaagtgtggaagtttcttgtggggtcaaaccagagatagaactgct 479
Query: 246 gctcccgctgcccctgcccccgcgtgaacacgttggtgtgcagcgtgtagggctcgccgg 305
|||| | | |||| |||| | |||||||| || ||||||| |||| || |||||||
Sbjct: 478 gctctctgtttcccttcccctgagtgaacacattagtgtgcaaaatgtaagggtcgccgg 419
Query: 306 acacgttgcccaggaactcgaagtcgatctcgtc 339
| ||| |||| |||||||||||||||||||||
Sbjct: 418 tgaggttccccaagaactcgaagtcgatctcgtc 385
Score = 42.1 bits (21), Expect = 0.030
Identities = 45/54 (83%)
Strand = Plus / Minus
Query: 53 ccagtcgtccgcgttcaacangctggagtagagcngcatcngctggctcttggg 106
||||||||| |||||| | | ||||||||| | | |||| |||||||||||||
Sbjct: 672 ccagtcgtcggcgttccagaggctggagtaaatcctcatcggctggctcttggg 619
>gb|BU832161.1|BU832161 T030B03 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 655
Score = 60.0 bits (30), Expect = 1e-007
Identities = 123/154 (79%)
Strand = Plus / Minus
Query: 186 tccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagaggcggaactgct 245
|||||| ||||||||| |||||||||| |||||||| |||||||| ||||||||
Sbjct: 525 tccagatgatggagtaagtgtggaagtttcttgtggggtcaaaccagagatagaactgct 466
Query: 246 gctcccgctgcccctgcccccgcgtgaacacgttggtgtgcagcgtgtagggctcgccgg 305
|||| | | |||| |||| | |||||||| || ||||||| |||| || |||||||
Sbjct: 465 gctctctgtttcccttcccctgagtgaacacattagtgtgcaaaatgtaagggtcgccgg 406
Query: 306 acacgttgcccaggaactcgaagtcgatctcgtc 339
| ||| |||| |||||||||||||||||||||
Sbjct: 405 tgaggttccccaagaactcgaagtcgatctcgtc 372
>gb|CX659340.1|CX659340 PO01029E03 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01029E03 5', mRNA sequence
Length = 601
Score = 60.0 bits (30), Expect = 1e-007
Identities = 123/154 (79%)
Strand = Plus / Minus
Query: 186 tccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagaggcggaactgct 245
|||||| ||||||||| |||||||||| |||||||| |||||||| ||| ||||
Sbjct: 523 tccagatgatggagtaagtgtggaagtttctcgtggggtcaaaccagagatagaattgct 464
Query: 246 gctcccgctgcccctgcccccgcgtgaacacgttggtgtgcagcgtgtagggctcgccgg 305
|||| | | |||| |||| | |||||||| |||||||||| |||| || |||||||
Sbjct: 463 gctctctgtttcccttcccctgagtgaacacattggtgtgcaaaatgtaagggtcgccgg 404
Query: 306 acacgttgcccaggaactcgaagtcgatctcgtc 339
| ||| |||| |||||||||||||||||||||
Sbjct: 403 tgaggttccccaagaactcgaagtcgatctcgtc 370
>gb|BU812637.1|BU812637 UL98TG02 Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 642
Score = 58.0 bits (29), Expect = 5e-007
Identities = 77/93 (82%)
Strand = Plus / Minus
Query: 157 gtccaccatgaagatgacgtgcttggggttccagaggatggagtaggtgtggaagtcggc 216
|||||||| |||||||| ||||| || ||||||| ||||||||| ||||||||||
Sbjct: 539 gtccaccaagaagatgatgtgctgaggattccagatgatggagtaagtgtggaagttcct 480
Query: 217 ggtggggtcgaaccagaggcggaactgctgctc 249
|||||||| |||||||| ||||||||||||
Sbjct: 479 cgtggggtcaaaccagagatagaactgctgctc 447
>gb|DT522694.1|DT522694 WS02037.B21_L04 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02037_L04 3', mRNA sequence
Length = 796
Score = 58.0 bits (29), Expect = 5e-007
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 182 gggttccagaggatggagtaggtgtggaa 210
|||||||||||||||||||||||||||||
Sbjct: 617 gggttccagaggatggagtaggtgtggaa 645
>gb|BU862485.1|BU862485 S016C11 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 645
Score = 50.1 bits (25), Expect = 1e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 182 gggttccagaggatggagtaggtgtggaa 210
|||||||| ||||||||||||||||||||
Sbjct: 519 gggttccaaaggatggagtaggtgtggaa 491
>gb|BU866707.1|BU866707 S069H02 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 725
Score = 50.1 bits (25), Expect = 1e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 182 gggttccagaggatggagtaggtgtggaa 210
|||||||| ||||||||||||||||||||
Sbjct: 524 gggttccaaaggatggagtaggtgtggaa 496
>gb|BU866897.1|BU866897 S072A05 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 650
Score = 50.1 bits (25), Expect = 1e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 182 gggttccagaggatggagtaggtgtggaa 210
|||||||| ||||||||||||||||||||
Sbjct: 525 gggttccaaaggatggagtaggtgtggaa 497
>gb|CF232862.1|CF232862 PtaJXO0016F8F0812 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 765
Score = 50.1 bits (25), Expect = 1e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 182 gggttccagaggatggagtaggtgtggaa 210
|||||||| ||||||||||||||||||||
Sbjct: 523 gggttccaaaggatggagtaggtgtggaa 495
>gb|CF233657.1|CF233657 PtaJXO0026B3B0303 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 664
Score = 50.1 bits (25), Expect = 1e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 182 gggttccagaggatggagtaggtgtggaa 210
|||||||| ||||||||||||||||||||
Sbjct: 524 gggttccaaaggatggagtaggtgtggaa 496
>gb|CF236318.1|CF236318 PtaJXT11D12D1208 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 768
Score = 50.1 bits (25), Expect = 1e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 182 gggttccagaggatggagtaggtgtggaa 210
|||||||| ||||||||||||||||||||
Sbjct: 526 gggttccaaaggatggagtaggtgtggaa 498
>gb|DN488621.1|DN488621 S016C11.3pR Populus imbibed seed cDNA library Populus tremula cDNA
clone S016C11 3', mRNA sequence
Length = 820
Score = 50.1 bits (25), Expect = 1e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 182 gggttccagaggatggagtaggtgtggaa 210
|||||||| ||||||||||||||||||||
Sbjct: 561 gggttccaaaggatggagtaggtgtggaa 589
>gb|DN498314.1|DN498314 S016C11.5pR Populus imbibed seed cDNA library Populus tremula cDNA
clone S016C11 5', mRNA sequence
Length = 863
Score = 50.1 bits (25), Expect = 1e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 182 gggttccagaggatggagtaggtgtggaa 210
|||||||| ||||||||||||||||||||
Sbjct: 517 gggttccaaaggatggagtaggtgtggaa 489
>gb|BI071607.1|BI071607 C060P75U Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 399
Score = 46.1 bits (23), Expect = 0.002
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 314 cccaggaactcgaagtcgatctcgtcgtgcg 344
|||| ||||||||||||||||||||| ||||
Sbjct: 268 cccaagaactcgaagtcgatctcgtcatgcg 238
>gb|BU829974.1|BU829974 T002D07 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 713
Score = 46.1 bits (23), Expect = 0.002
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 314 cccaggaactcgaagtcgatctcgtcgtgcg 344
|||| ||||||||||||||||||||| ||||
Sbjct: 284 cccaagaactcgaagtcgatctcgtcatgcg 254
>gb|BU878471.1|BU878471 V047G03 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 350
Score = 46.1 bits (23), Expect = 0.002
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 221 gggtcgaaccagaggcggaactgctgctccc 251
||||| |||||| ||||||||||||||||||
Sbjct: 122 gggtcaaaccaggggcggaactgctgctccc 92
>gb|CX653969.1|CX653969 PO02011A02 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02011A02 5', mRNA sequence
Length = 186
Score = 46.1 bits (23), Expect = 0.002
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 314 cccaggaactcgaagtcgatctcgtcgtgcg 344
|||| ||||||||||||||||||||| ||||
Sbjct: 165 cccaagaactcgaagtcgatctcgtcatgcg 135
>gb|CX655073.1|CX655073 PO01004E04 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01004E04 5', mRNA sequence
Length = 620
Score = 46.1 bits (23), Expect = 0.002
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 314 cccaggaactcgaagtcgatctcgtcgtgcg 344
|||| ||||||||||||||||||||| ||||
Sbjct: 354 cccaagaactcgaagtcgatctcgtcatgcg 324
>gb|BP928728.1|BP928728 BP928728 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-087_L18.f 5', mRNA sequence
Length = 402
Score = 46.1 bits (23), Expect = 0.002
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 314 cccaggaactcgaagtcgatctcgtcgtgcg 344
|||| ||||||||||||||||||||| ||||
Sbjct: 395 cccaagaactcgaagtcgatctcgtcatgcg 365
>gb|DN492113.1|DN492113 V047G03.3pR Populus male catkins cDNA library Populus trichocarpa
cDNA clone V047G03 3', mRNA sequence
Length = 803
Score = 46.1 bits (23), Expect = 0.002
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 221 gggtcgaaccagaggcggaactgctgctccc 251
||||| |||||| ||||||||||||||||||
Sbjct: 656 gggtcaaaccaggggcggaactgctgctccc 686
>gb|DN502055.1|DN502055 V047G03.5pR Populus male catkins cDNA library Populus trichocarpa
cDNA clone V047G03 5', mRNA sequence
Length = 718
Score = 46.1 bits (23), Expect = 0.002
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 221 gggtcgaaccagaggcggaactgctgctccc 251
||||| |||||| ||||||||||||||||||
Sbjct: 143 gggtcaaaccaggggcggaactgctgctccc 113
>gb|DT508868.1|DT508868 WS02422.BR_C14 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02422_C14 5', mRNA sequence
Length = 880
Score = 46.1 bits (23), Expect = 0.002
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 314 cccaggaactcgaagtcgatctcgtcgtgcg 344
|||| ||||||||||||||||||||| ||||
Sbjct: 444 cccaagaactcgaagtcgatctcgtcatgcg 414
>gb|DT513477.1|DT513477 WS02422.B21_C14 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02422_C14 3', mRNA sequence
Length = 830
Score = 46.1 bits (23), Expect = 0.002
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 314 cccaggaactcgaagtcgatctcgtcgtgcg 344
|||| ||||||||||||||||||||| ||||
Sbjct: 790 cccaagaactcgaagtcgatctcgtcatgcg 820
>gb|BU866977.1|BU866977 S072H08 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 648
Score = 44.1 bits (22), Expect = 0.008
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 200 taggtgtggaagtcggcggtggggtcgaaccagaggcggaactgctgctc 249
|||||||||||||| ||||||||||||||| || ||||||||||||
Sbjct: 505 taggtgtggaagtctttggtggggtcgaaccaaagatagaactgctgctc 456
Score = 40.1 bits (20), Expect = 0.12
Identities = 62/76 (81%)
Strand = Plus / Minus
Query: 365 tagtaggcggtgacggtgccggcggagttgcccggcaccagccgcagctgcatgtcgatc 424
||||| |||||||| || ||||| ||||| || ||||||| | || |||||||||||
Sbjct: 340 tagtaagcggtgacagttccggcagagtttccaggcaccaactttagttgcatgtcgatt 281
Query: 425 ttgccgaacaggtact 440
|| ||||||| |||||
Sbjct: 280 ttcccgaacaagtact 265
>gb|BU867001.1|BU867001 S073B10 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 635
Score = 44.1 bits (22), Expect = 0.008
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 200 taggtgtggaagtcggcggtggggtcgaaccagaggcggaactgctgctc 249
|||||||||||||| ||||||||||||||| || ||||||||||||
Sbjct: 494 taggtgtggaagtctttggtggggtcgaaccaaagatagaactgctgctc 445
Score = 40.1 bits (20), Expect = 0.12
Identities = 62/76 (81%)
Strand = Plus / Minus
Query: 365 tagtaggcggtgacggtgccggcggagttgcccggcaccagccgcagctgcatgtcgatc 424
||||| |||||||| || ||||| ||||| || ||||||| | || |||||||||||
Sbjct: 329 tagtaagcggtgacagttccggcagagtttccaggcaccaactttagttgcatgtcgatt 270
Query: 425 ttgccgaacaggtact 440
|| ||||||| |||||
Sbjct: 269 ttcccgaacaagtact 254
>gb|CK095633.1|CK095633 UA17CPF12.3pR Populus dormant cambium cDNA library Populus tremula
cDNA clone UA17CPF12 3', mRNA sequence
Length = 695
Score = 44.1 bits (22), Expect = 0.008
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 200 taggtgtggaagtcggcggtggggtcgaaccagaggcggaactgctgctc 249
|||||||||||||| ||||||||||||||| || ||||||||||||
Sbjct: 519 taggtgtggaagtctttggtggggtcgaaccaaagatagaactgctgctc 568
>gb|CN520892.1|CN520892 GQ0107.B3_B21 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0107_B21 5', mRNA sequence
Length = 793
Score = 44.1 bits (22), Expect = 0.008
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 314 cccaggaactcgaagtcgatctcgtc 339
|||| |||||||||||||||||||||
Sbjct: 368 cccaagaactcgaagtcgatctcgtc 343
>gb|CN523304.1|CN523304 GQ015M01.B3_L01 GQ015 Populus trichocarpa x Populus deltoides cDNA
clone GQ015M01_L01 5', mRNA sequence
Length = 696
Score = 44.1 bits (22), Expect = 0.008
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 314 cccaggaactcgaagtcgatctcgtc 339
|||| |||||||||||||||||||||
Sbjct: 405 cccaagaactcgaagtcgatctcgtc 380
>gb|CN549971.1|CN549971 GQ0243.B3_C07 GQ024 Populus trichocarpa x Populus deltoides cDNA
clone GQ0243_C07 5', mRNA sequence
Length = 514
Score = 44.1 bits (22), Expect = 0.008
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 314 cccaggaactcgaagtcgatctcgtc 339
|||| |||||||||||||||||||||
Sbjct: 460 cccaagaactcgaagtcgatctcgtc 485
>gb|AJ773668.1|AJ773668 AJ773668 Populus euphratica shoot 3-6 months Populus euphratica
cDNA clone P0000300004C05F1, mRNA sequence
Length = 611
Score = 44.1 bits (22), Expect = 0.008
Identities = 70/86 (81%)
Strand = Plus / Minus
Query: 356 gacgacaggtagtaggcggtgacggtgccggcggagttgcccggcaccagccgcagctgc 415
|||||||| || || |||||||||||||| || |||||||| || || ||| || |||
Sbjct: 309 gacgacagataataagcggtgacggtgcctgcagagttgccagggacaagcttgagttgc 250
Query: 416 atgtcgatcttgccgaacaggtactc 441
||||| ||||| || ||||| |||||
Sbjct: 249 atgtcaatctttccaaacagatactc 224
>gb|AJ773669.1|AJ773669 AJ773669 Populus euphratica shoot 3-6 months Populus euphratica
cDNA clone P0000300004C05F2, mRNA sequence
Length = 585
Score = 44.1 bits (22), Expect = 0.008
Identities = 70/86 (81%)
Strand = Plus / Minus
Query: 356 gacgacaggtagtaggcggtgacggtgccggcggagttgcccggcaccagccgcagctgc 415
|||||||| || || |||||||||||||| || |||||||| || || ||| || |||
Sbjct: 337 gacgacagataataagcggtgacggtgcctgcagagttgccagggacaagcttgagttgc 278
Query: 416 atgtcgatcttgccgaacaggtactc 441
||||| ||||| || ||||| |||||
Sbjct: 277 atgtcaatctttccaaacagatactc 252
>gb|CV236170.1|CV236170 WS01223.B21_B16 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01223_B16 3', mRNA sequence
Length = 838
Score = 44.1 bits (22), Expect = 0.008
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 314 cccaggaactcgaagtcgatctcgtc 339
|||| |||||||||||||||||||||
Sbjct: 797 cccaagaactcgaagtcgatctcgtc 822
>gb|CV237332.1|CV237332 WS01227.B21.1_I01 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01227_I01 3', mRNA sequence
Length = 870
Score = 44.1 bits (22), Expect = 0.008
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 314 cccaggaactcgaagtcgatctcgtc 339
|||| |||||||||||||||||||||
Sbjct: 797 cccaagaactcgaagtcgatctcgtc 822
>gb|CV270106.1|CV270106 WS0151.B21_B16 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0151_B16 3', mRNA sequence
Length = 875
Score = 44.1 bits (22), Expect = 0.008
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 314 cccaggaactcgaagtcgatctcgtc 339
|||| |||||||||||||||||||||
Sbjct: 811 cccaagaactcgaagtcgatctcgtc 836
>gb|BP926448.1|BP926448 BP926448 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-059_D16.f 5', mRNA sequence
Length = 539
Score = 44.1 bits (22), Expect = 0.008
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 314 cccaggaactcgaagtcgatctcgtc 339
|||| |||||||||||||||||||||
Sbjct: 409 cccaagaactcgaagtcgatctcgtc 384
>gb|DT472846.1|DT472846 WS01227.BR_I01 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01227_I01 5', mRNA sequence
Length = 853
Score = 44.1 bits (22), Expect = 0.008
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 314 cccaggaactcgaagtcgatctcgtc 339
|||| |||||||||||||||||||||
Sbjct: 414 cccaagaactcgaagtcgatctcgtc 389
>gb|DT479295.1|DT479295 WS02525.BR_G07 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02525_G07 5', mRNA sequence
Length = 751
Score = 44.1 bits (22), Expect = 0.008
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 314 cccaggaactcgaagtcgatctcgtc 339
|||| |||||||||||||||||||||
Sbjct: 391 cccaagaactcgaagtcgatctcgtc 366
>gb|DT495090.1|DT495090 WS0112.BR_F17 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0112_F17
5', mRNA sequence
Length = 627
Score = 44.1 bits (22), Expect = 0.008
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 314 cccaggaactcgaagtcgatctcgtc 339
|||| |||||||||||||||||||||
Sbjct: 417 cccaagaactcgaagtcgatctcgtc 392
>gb|DT517604.1|DT517604 WS02434.B21_M13 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02434_M13 3', mRNA sequence
Length = 841
Score = 44.1 bits (22), Expect = 0.008
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 314 cccaggaactcgaagtcgatctcgtc 339
|||| |||||||||||||||||||||
Sbjct: 816 cccaagaactcgaagtcgatctcgtc 841
>gb|DV466514.1|DV466514 MTUNUL1.P6.F09 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 678
Score = 44.1 bits (22), Expect = 0.008
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 314 cccaggaactcgaagtcgatctcgtc 339
|||| |||||||||||||||||||||
Sbjct: 378 cccaagaactcgaagtcgatctcgtc 353
>gb|BU862546.1|BU862546 S017A09 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 521
Score = 42.1 bits (21), Expect = 0.030
Identities = 45/54 (83%)
Strand = Plus / Minus
Query: 53 ccagtcgtccgcgttcaacangctggagtagagcngcatcngctggctcttggg 106
||||||||| |||||| | | ||||||||| | | |||| |||||||||||||
Sbjct: 55 ccagtcgtcggcgttccagaggctggagtaaatcctcatcggctggctcttggg 2
>gb|CF236335.1|CF236335 PtaJXT11E9E0909 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 755
Score = 42.1 bits (21), Expect = 0.030
Identities = 45/54 (83%)
Strand = Plus / Minus
Query: 53 ccagtcgtccgcgttcaacangctggagtagagcngcatcngctggctcttggg 106
||||||||| |||||| | | ||||||||| | | |||| |||||||||||||
Sbjct: 231 ccagtcgtcggcgttccagaggctggagtaaatcctcatcggctggctcttggg 178
Score = 40.1 bits (20), Expect = 0.12
Identities = 53/64 (82%)
Strand = Plus / Minus
Query: 186 tccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagaggcggaactgct 245
|||||| ||||||||| |||||||||| |||||||| |||||||| ||||||||
Sbjct: 97 tccagatgatggagtaagtgtggaagtttcttgtggggtcaaaccagagatagaactgct 38
Query: 246 gctc 249
||||
Sbjct: 37 gctc 34
>gb|CV256088.1|CV256088 WS0242.B21_O11 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0242_O11 3', mRNA sequence
Length = 909
Score = 42.1 bits (21), Expect = 0.030
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 319 gaactcgaagtcgatctcgtc 339
|||||||||||||||||||||
Sbjct: 802 gaactcgaagtcgatctcgtc 822
>gb|DN488925.1|DN488925 S058C02.3pR Populus imbibed seed cDNA library Populus tremula cDNA
clone S058C02 3', mRNA sequence
Length = 432
Score = 42.1 bits (21), Expect = 0.030
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 240 actgctgctcccgctgcccctgcccccgc 268
|||||||||||||||||| |||| |||||
Sbjct: 169 actgctgctcccgctgccgctgctcccgc 197
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 59,327
Number of Sequences: 369679
Number of extensions: 59327
Number of successful extensions: 15216
Number of sequences better than 0.5: 82
Number of HSP's better than 0.5 without gapping: 78
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 15039
Number of HSP's gapped (non-prelim): 174
length of query: 757
length of database: 203,408,664
effective HSP length: 19
effective length of query: 738
effective length of database: 196,384,763
effective search space: 144931955094
effective search space used: 144931955094
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)