BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3204398.2.1
(666 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV274273.1|CV274273 WS0172.B21_M01 PTxD-NR-A-8 Populus t... 50 1e-004
gb|DN485453.1|DN485453 N005G05.3pR Populus bark cDNA librar... 46 0.002
gb|CX169214.1|CX169214 H01_69-102_15.ab1 leaf inoculated wi... 38 0.41
>gb|CV274273.1|CV274273 WS0172.B21_M01 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS0172_M01 3', mRNA sequence
Length = 835
Score = 50.1 bits (25), Expect = 1e-004
Identities = 70/85 (82%)
Strand = Plus / Minus
Query: 119 cacttataagggttgtggtgacgaggactgaaattgatatgcaatatatcaaggcagagt 178
||||||||||||| | ||||| |||||||| ||||| ||||| ||||| || || || |
Sbjct: 391 cacttataagggtaattgtgacaaggactgagattgacatgcattatataaaagctgaat 332
Query: 179 acttcaagaagtataagaagccatt 203
| || |||||||| |||||| ||||
Sbjct: 331 atttgaagaagtacaagaagacatt 307
>gb|DN485453.1|DN485453 N005G05.3pR Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA clone N005G05 3', mRNA sequence
Length = 848
Score = 46.1 bits (23), Expect = 0.002
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 121 cttataagggttgtggtgacgaggactgaaattgatatgcaatatat 167
||||||||||| | ||||| |||||||| ||||| |||||||||||
Sbjct: 425 cttataagggtaattgtgacaaggactgagattgacatgcaatatat 379
>gb|CX169214.1|CX169214 H01_69-102_15.ab1 leaf inoculated with Marssonia pathogen of
Populus deltoides Populus deltoides cDNA, mRNA sequence
Length = 636
Score = 38.2 bits (19), Expect = 0.41
Identities = 40/47 (85%)
Strand = Plus / Minus
Query: 121 cttataagggttgtggtgacgaggactgaaattgatatgcaatatat 167
||||||||||| | ||||| |||||||| || || |||||||||||
Sbjct: 395 cttataagggtaattgtgacaaggactgagatcgacatgcaatatat 349
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 73,924
Number of Sequences: 369679
Number of extensions: 73924
Number of successful extensions: 19610
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19606
Number of HSP's gapped (non-prelim): 4
length of query: 666
length of database: 203,408,664
effective HSP length: 19
effective length of query: 647
effective length of database: 196,384,763
effective search space: 127060941661
effective search space used: 127060941661
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)