BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3203235.2.1
(637 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU880261.1|BU880261 UM43TE12 Populus flower cDNA library... 38 0.40
gb|CX181590.1|CX181590 C12_45-122_06.ab1 leaf inoculated wi... 38 0.40
gb|CX185370.1|CX185370 B03_45-59_03.ab1 leaf inoculated wit... 38 0.40
gb|DT474633.1|DT474633 WS0124.BR_I04 PT-GT-FL-A-3 Populus t... 38 0.40
gb|DT495583.1|DT495583 WS01120.BR_O12 PT-P-FL-A-2 Populus t... 38 0.40
gb|DT501297.1|DT501297 WS01312.BR_D24 PTxD-IL-FL-A-4 Populu... 38 0.40
>gb|BU880261.1|BU880261 UM43TE12 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 505
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 619 cggcagcggcagcggcggc 637
|||||||||||||||||||
Sbjct: 92 cggcagcggcagcggcggc 110
>gb|CX181590.1|CX181590 C12_45-122_06.ab1 leaf inoculated with Marssonia pathogen of
Populus euramericana Populus x canadensis cDNA, mRNA
sequence
Length = 728
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 619 cggcagcggcagcggcggc 637
|||||||||||||||||||
Sbjct: 506 cggcagcggcagcggcggc 524
>gb|CX185370.1|CX185370 B03_45-59_03.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 674
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 619 cggcagcggcagcggcggc 637
|||||||||||||||||||
Sbjct: 98 cggcagcggcagcggcggc 116
>gb|DT474633.1|DT474633 WS0124.BR_I04 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0124_I04 5', mRNA sequence
Length = 679
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 619 cggcagcggcagcggcggc 637
|||||||||||||||||||
Sbjct: 4 cggcagcggcagcggcggc 22
>gb|DT495583.1|DT495583 WS01120.BR_O12 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01120_O12 5', mRNA sequence
Length = 912
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 619 cggcagcggcagcggcggc 637
|||||||||||||||||||
Sbjct: 493 cggcagcggcagcggcggc 511
>gb|DT501297.1|DT501297 WS01312.BR_D24 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS01312_D24 5', mRNA sequence
Length = 519
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 619 cggcagcggcagcggcggc 637
|||||||||||||||||||
Sbjct: 35 cggcagcggcagcggcggc 53
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 43,384
Number of Sequences: 369679
Number of extensions: 43384
Number of successful extensions: 10984
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10972
Number of HSP's gapped (non-prelim): 12
length of query: 637
length of database: 203,408,664
effective HSP length: 19
effective length of query: 618
effective length of database: 196,384,763
effective search space: 121365783534
effective search space used: 121365783534
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)