BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3198841.2.2
(602 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI070213.1|BI070213 C016P12U Populus strain T89 leaves P... 84 7e-015
gb|BU814624.1|BU814624 N031A10 Populus bark cDNA library Po... 84 7e-015
gb|BU885878.1|BU885878 R037E02 Populus root cDNA library Po... 84 7e-015
gb|BU897916.1|BU897916 X071H02 Populus wood cDNA library Po... 84 7e-015
gb|CK100267.1|CK100267 C016P12.5pR Populus strain T89 leave... 84 7e-015
gb|CX178660.1|CX178660 G11_45-62_13.ab1 leaf inoculated wit... 84 7e-015
gb|BU814626.1|BU814626 N031A12 Populus bark cDNA library Po... 78 4e-013
gb|CK116788.1|CK116788 B017P65 Hybrid aspen plasmid library... 68 4e-010
gb|AJ772578.1|AJ772578 AJ772578 Populus euphratica shoot in... 62 3e-008
gb|AJ772309.1|AJ772309 AJ772309 Populus euphratica shoot in... 58 4e-007
gb|AJ770394.1|AJ770394 AJ770394 Populus euphratica leaf 3-6... 58 4e-007
gb|AJ772705.1|AJ772705 AJ772705 Populus euphratica shoot in... 56 2e-006
gb|AJ772799.1|AJ772799 AJ772799 Populus euphratica shoot in... 56 2e-006
gb|CX172787.1|CX172787 G12_69-41_14.ab1 leaf inoculated wit... 54 6e-006
gb|CX178524.1|CX178524 E10_45-85_10.ab1 leaf inoculated wit... 54 6e-006
gb|CX181754.1|CX181754 C11_45-76_05.ab1 leaf inoculated wit... 54 6e-006
gb|CX183392.1|CX183392 F03_45-49_11.ab1 leaf inoculated wit... 54 6e-006
gb|CX187077.1|CX187077 D02_45-47_08.ab1 leaf inoculated wit... 54 6e-006
gb|BI138277.1|BI138277 F102P58Y Populus flower cDNA library... 48 4e-004
gb|BI139224.1|BI139224 F126P72Y Populus flower cDNA library... 48 4e-004
gb|CX185661.1|CX185661 D05_45-22_07.ab1 leaf inoculated wit... 46 0.002
gb|DT470321.1|DT470321 WS01920.C21_I12 PT-DX-N-A-10 Populus... 40 0.095
>gb|BI070213.1|BI070213 C016P12U Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 437
Score = 83.8 bits (42), Expect = 7e-015
Identities = 90/106 (84%)
Strand = Plus / Plus
Query: 360 ccacgccatgaagtgcagcaggttgtatgctcattgtgtggcactgaacaggaggtgcga 419
|||||||||||||| | ||||| ||||||| | |||||||||||||| ||||| | |
Sbjct: 162 ccacgccatgaagtcaaacaggtgatatgctcgctttgtggcactgaacaagaggttcaa 221
Query: 420 caagtatgtatcaattgcggtgtttgcatggggaagtacttctgtg 465
||||| |||||||| || ||||| |||||||| |||||||||||||
Sbjct: 222 caagtttgtatcaactgtggtgtgtgcatgggaaagtacttctgtg 267
>gb|BU814624.1|BU814624 N031A10 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 689
Score = 83.8 bits (42), Expect = 7e-015
Identities = 90/106 (84%)
Strand = Plus / Plus
Query: 360 ccacgccatgaagtgcagcaggttgtatgctcattgtgtggcactgaacaggaggtgcga 419
|||||||||||||| | ||||| ||||||| | |||||||||||||| ||||| | |
Sbjct: 512 ccacgccatgaagtcaaacaggtgatatgctcgctttgtggcactgaacaagaggttcaa 571
Query: 420 caagtatgtatcaattgcggtgtttgcatggggaagtacttctgtg 465
||||| |||||||| || ||||| |||||||| |||||||||||||
Sbjct: 572 caagtttgtatcaactgtggtgtgtgcatgggaaagtacttctgtg 617
>gb|BU885878.1|BU885878 R037E02 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 595
Score = 83.8 bits (42), Expect = 7e-015
Identities = 90/106 (84%)
Strand = Plus / Plus
Query: 360 ccacgccatgaagtgcagcaggttgtatgctcattgtgtggcactgaacaggaggtgcga 419
|||||||||||||| | ||||| ||||||| | |||||||||||||| ||||| | |
Sbjct: 166 ccacgccatgaagtcaaacaggtgatatgctcgctttgtggcactgaacaagaggttcaa 225
Query: 420 caagtatgtatcaattgcggtgtttgcatggggaagtacttctgtg 465
||||| |||||||| || ||||| |||||||| |||||||||||||
Sbjct: 226 caagtttgtatcaactgtggtgtgtgcatgggaaagtacttctgtg 271
>gb|BU897916.1|BU897916 X071H02 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 710
Score = 83.8 bits (42), Expect = 7e-015
Identities = 90/106 (84%)
Strand = Plus / Plus
Query: 360 ccacgccatgaagtgcagcaggttgtatgctcattgtgtggcactgaacaggaggtgcga 419
|||||||||||||| | ||||| ||||||| | |||||||||||||| ||||| | |
Sbjct: 576 ccacgccatgaagtcaaacaggtgatatgctcgctttgtggcactgaacaagaggttcaa 635
Query: 420 caagtatgtatcaattgcggtgtttgcatggggaagtacttctgtg 465
||||| |||||||| || ||||| |||||||| |||||||||||||
Sbjct: 636 caagtttgtatcaactgtggtgtgtgcatgggaaagtacttctgtg 681
>gb|CK100267.1|CK100267 C016P12.5pR Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA clone C016P12 5', mRNA sequence
Length = 669
Score = 83.8 bits (42), Expect = 7e-015
Identities = 90/106 (84%)
Strand = Plus / Plus
Query: 360 ccacgccatgaagtgcagcaggttgtatgctcattgtgtggcactgaacaggaggtgcga 419
|||||||||||||| | ||||| ||||||| | |||||||||||||| ||||| | |
Sbjct: 167 ccacgccatgaagtcaaacaggtgatatgctcgctttgtggcactgaacaagaggttcaa 226
Query: 420 caagtatgtatcaattgcggtgtttgcatggggaagtacttctgtg 465
||||| |||||||| || ||||| |||||||| |||||||||||||
Sbjct: 227 caagtttgtatcaactgtggtgtgtgcatgggaaagtacttctgtg 272
>gb|CX178660.1|CX178660 G11_45-62_13.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 634
Score = 83.8 bits (42), Expect = 7e-015
Identities = 90/106 (84%)
Strand = Plus / Plus
Query: 360 ccacgccatgaagtgcagcaggttgtatgctcattgtgtggcactgaacaggaggtgcga 419
|||||||||||||| | ||||| ||||||| | |||||||||||||| ||||| | |
Sbjct: 461 ccacgccatgaagtcaaacaggtgatatgctcgctttgtggcactgaacaagaggttcaa 520
Query: 420 caagtatgtatcaattgcggtgtttgcatggggaagtacttctgtg 465
||||| |||||||| || ||||| |||||||| |||||||||||||
Sbjct: 521 caagtttgtatcaactgtggtgtgtgcatgggaaagtacttctgtg 566
Score = 48.1 bits (24), Expect = 4e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 255 tgccgcataagagctccttgctgcaatgaaatttttgattgccg 298
|||||||| ||||| |||||||| |||||| | |||||||||||
Sbjct: 356 tgccgcatcagagcaccttgctgtaatgaagtatttgattgccg 399
>gb|BU814626.1|BU814626 N031A12 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 685
Score = 77.8 bits (39), Expect = 4e-013
Identities = 91/107 (85%), Gaps = 1/107 (0%)
Strand = Plus / Plus
Query: 360 ccacgccatgaagtgcagcaggttgtatgctcattgtgtggcactgaacaggaggtgcga 419
|||||||||||||| | ||||| ||||||| | |||||||||||||| ||||| | |
Sbjct: 550 ccacgccatgaagtcaaacaggtgatatgctcgctttgtggcactgaacaagaggttcaa 609
Query: 420 caagtatgtat-caattgcggtgtttgcatggggaagtacttctgtg 465
||||| ||||| ||| |||||||| |||||||| |||||||||||||
Sbjct: 610 caagtttgtattcaactgcggtgtgtgcatgggaaagtacttctgtg 656
>gb|CK116788.1|CK116788 B017P65 Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone B017P65 5', mRNA sequence
Length = 361
Score = 67.9 bits (34), Expect = 4e-010
Identities = 89/106 (83%), Gaps = 1/106 (0%)
Strand = Plus / Plus
Query: 360 ccacgccatgaagtgcagcaggttgtatgctcattgtgtggcactgaacaggaggtgcga 419
|||||||||||||| | ||||| ||||||| | |||||||||||||| ||||| | |
Sbjct: 193 ccacgccatgaagtcaaacaggtgatatgctcgctttgtggcactgaacaagaggttcaa 252
Query: 420 caagtatgtatcaattgcggtgtttgcatggggaagtacttctgtg 465
||||| |||||||| || ||||| |||||||| |||| ||||||||
Sbjct: 253 caagtttgtatcaactgtggtgtgtgcatgggaaagt-cttctgtg 297
>gb|AJ772578.1|AJ772578 AJ772578 Populus euphratica shoot in vitro plantlet Israel Populus
euphratica cDNA clone P0001700008F07F1, mRNA sequence
Length = 549
Score = 61.9 bits (31), Expect = 3e-008
Identities = 82/99 (82%)
Strand = Plus / Plus
Query: 360 ccacgccatgaagtgcagcaggttgtatgctcattgtgtggcactgaacaggaggtgcga 419
|||||||||||| | | ||||| ||||||| | |||||||||||||| ||||| | |
Sbjct: 447 ccacgccatgaaatcaaacaggtgatatgctcgctttgtggcactgaacaagaggttcaa 506
Query: 420 caagtatgtatcaattgcggtgtttgcatggggaagtac 458
||||| |||||||| || ||||| |||||||| ||||||
Sbjct: 507 caagtctgtatcaactgtggtgtgtgcatgggaaagtac 545
Score = 56.0 bits (28), Expect = 2e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 255 tgccgcataagagctccttgctgcaatgaaatttttgattgccg 298
|||||||| ||||| ||||||||||||||| | |||||||||||
Sbjct: 342 tgccgcatcagagcaccttgctgcaatgaagtatttgattgccg 385
>gb|AJ772309.1|AJ772309 AJ772309 Populus euphratica shoot in vitro plantlet Israel Populus
euphratica cDNA clone P0001700004F05F1, mRNA sequence
Length = 540
Score = 58.0 bits (29), Expect = 4e-007
Identities = 80/97 (82%)
Strand = Plus / Minus
Query: 360 ccacgccatgaagtgcagcaggttgtatgctcattgtgtggcactgaacaggaggtgcga 419
|||||||||||| | | ||||| ||||||| | |||||||||||||| ||||| | |
Sbjct: 97 ccacgccatgaaatcaaacaggtgatatgctcgctttgtggcactgaacaagaggttcaa 38
Query: 420 caagtatgtatcaattgcggtgtttgcatggggaagt 456
||||| |||||||| || ||||| |||||||| ||||
Sbjct: 37 caagtctgtatcaactgtggtgtgtgcatgggaaagt 1
Score = 56.0 bits (28), Expect = 2e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 255 tgccgcataagagctccttgctgcaatgaaatttttgattgccg 298
|||||||| ||||| ||||||||||||||| | |||||||||||
Sbjct: 202 tgccgcatcagagcaccttgctgcaatgaagtatttgattgccg 159
>gb|AJ770394.1|AJ770394 AJ770394 Populus euphratica leaf 3-6 months, adult Populus
euphratica cDNA clone P0001100011D01F1, mRNA sequence
Length = 450
Score = 58.0 bits (29), Expect = 4e-007
Identities = 80/97 (82%)
Strand = Plus / Plus
Query: 360 ccacgccatgaagtgcagcaggttgtatgctcattgtgtggcactgaacaggaggtgcga 419
|||||||||||| | | ||||| ||||||| | |||||||||||||| ||||| | |
Sbjct: 354 ccacgccatgaaatcaaacaggtgatatgctcgctttgtggcactgaacaagaggttcaa 413
Query: 420 caagtatgtatcaattgcggtgtttgcatggggaagt 456
||||| |||||||| || ||||| |||||||| ||||
Sbjct: 414 caagtttgtatcaactgtggtgtgtgcatgggaaagt 450
Score = 48.1 bits (24), Expect = 4e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 255 tgccgcataagagctccttgctgcaatgaaatttttgattgccg 298
|||||||| ||||| ||||||||||| ||| | |||||||||||
Sbjct: 249 tgccgcatcagagcaccttgctgcaacgaagtatttgattgccg 292
>gb|AJ772705.1|AJ772705 AJ772705 Populus euphratica shoot in vitro plantlet Israel Populus
euphratica cDNA clone P0001700011F05F1, mRNA sequence
Length = 565
Score = 56.0 bits (28), Expect = 2e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 255 tgccgcataagagctccttgctgcaatgaaatttttgattgccg 298
|||||||| ||||| ||||||||||||||| | |||||||||||
Sbjct: 339 tgccgcatcagagcaccttgctgcaatgaagtatttgattgccg 382
>gb|AJ772799.1|AJ772799 AJ772799 Populus euphratica shoot in vitro plantlet Israel Populus
euphratica cDNA clone P0001700015D10F1, mRNA sequence
Length = 281
Score = 56.0 bits (28), Expect = 2e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 255 tgccgcataagagctccttgctgcaatgaaatttttgattgccg 298
|||||||| ||||| ||||||||||||||| | |||||||||||
Sbjct: 222 tgccgcatcagagcaccttgctgcaatgaagtatttgattgccg 265
>gb|CX172787.1|CX172787 G12_69-41_14.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 666
Score = 54.0 bits (27), Expect = 6e-006
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 238 cacattatagaaggagatgccgcataagagctccttgctgcaatgaaatttttgattgc 296
|||||||||| ||||||||| || ||||| ||||| ||||||||||| |||||||||
Sbjct: 334 cacattataggaggagatgcaagattagagcaccttgttgcaatgaaatctttgattgc 392
>gb|CX178524.1|CX178524 E10_45-85_10.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 702
Score = 54.0 bits (27), Expect = 6e-006
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 238 cacattatagaaggagatgccgcataagagctccttgctgcaatgaaatttttgattgc 296
|||||||||| ||||||||| || ||||| ||||| ||||||||||| |||||||||
Sbjct: 358 cacattataggaggagatgcaagattagagcaccttgttgcaatgaaatctttgattgc 416
>gb|CX181754.1|CX181754 C11_45-76_05.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 742
Score = 54.0 bits (27), Expect = 6e-006
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 238 cacattatagaaggagatgccgcataagagctccttgctgcaatgaaatttttgattgc 296
|||||||||| ||||||||| || ||||| ||||| ||||||||||| |||||||||
Sbjct: 463 cacattataggaggagatgcaagattagagcaccttgttgcaatgaaatctttgattgc 521
>gb|CX183392.1|CX183392 F03_45-49_11.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 704
Score = 54.0 bits (27), Expect = 6e-006
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 238 cacattatagaaggagatgccgcataagagctccttgctgcaatgaaatttttgattgc 296
|||||||||| ||||||||| || ||||| ||||| ||||||||||| |||||||||
Sbjct: 446 cacattataggaggagatgcaagattagagcaccttgttgcaatgaaatctttgattgc 504
>gb|CX187077.1|CX187077 D02_45-47_08.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 695
Score = 54.0 bits (27), Expect = 6e-006
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 238 cacattatagaaggagatgccgcataagagctccttgctgcaatgaaatttttgattgc 296
|||||||||| ||||||||| || ||||| ||||| ||||||||||| |||||||||
Sbjct: 472 cacattataggaggagatgcaagattagagcaccttgttgcaatgaaatctttgattgc 530
>gb|BI138277.1|BI138277 F102P58Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 353
Score = 48.1 bits (24), Expect = 4e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 255 tgccgcataagagctccttgctgcaatgaaatttttgattgccg 298
|||||||| ||||| |||||||| |||||| | |||||||||||
Sbjct: 133 tgccgcatcagagcaccttgctgtaatgaagtatttgattgccg 176
>gb|BI139224.1|BI139224 F126P72Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 213
Score = 48.1 bits (24), Expect = 4e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 255 tgccgcataagagctccttgctgcaatgaaatttttgattgccg 298
|||||||| ||||| |||||||| |||||| | |||||||||||
Sbjct: 78 tgccgcatcagagcaccttgctgtaatgaagtatttgattgccg 121
>gb|CX185661.1|CX185661 D05_45-22_07.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 665
Score = 46.1 bits (23), Expect = 0.002
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 238 cacattatagaaggagatgccgcataagagctccttgctgcaatgaaatttttgattgc 296
|||||||||| ||||||||| || | ||| ||||| ||||||||||| |||||||||
Sbjct: 226 cacattataggaggagatgcaagattaaagcaccttgttgcaatgaaatctttgattgc 284
>gb|DT470321.1|DT470321 WS01920.C21_I12 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01920_I12 3', mRNA sequence
Length = 840
Score = 40.1 bits (20), Expect = 0.095
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 438 ggtgtttgcatggggaagtacttctgtg 465
||||| |||||||| |||||||||||||
Sbjct: 840 ggtgtgtgcatgggaaagtacttctgtg 813
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 70,991
Number of Sequences: 369679
Number of extensions: 70991
Number of successful extensions: 19905
Number of sequences better than 0.5: 22
Number of HSP's better than 0.5 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19850
Number of HSP's gapped (non-prelim): 54
length of query: 602
length of database: 203,408,664
effective HSP length: 19
effective length of query: 583
effective length of database: 196,384,763
effective search space: 114492316829
effective search space used: 114492316829
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)