BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3198833.2.1
(593 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV252708.1|CV252708 PX0015.B21_L09 PT-X-FL-A-1 Populus t... 48 4e-004
gb|DT500518.1|DT500518 PX0015.BR_L09 PT-X-FL-A-1 Populus tr... 48 4e-004
gb|DT526222.1|DT526222 WS02047.C21_H05 PTxN-IB-N-A-11 Popul... 48 4e-004
gb|DV466001.1|DV466001 MTUNUL1.P46.A08 NUL Populus fremonti... 48 4e-004
gb|CV264358.1|CV264358 WS02024.B21_F01 PTxN-IB-N-A-11 Popul... 42 0.024
gb|DT524640.1|DT524640 WS02043.C21_D08 PTxN-IB-N-A-11 Popul... 42 0.024
gb|CX655866.1|CX655866 PO02041D02 Poplar SC cDNA library Po... 38 0.37
gb|CX657489.1|CX657489 PO02048B12 Poplar SC cDNA library Po... 38 0.37
>gb|CV252708.1|CV252708 PX0015.B21_L09 PT-X-FL-A-1 Populus trichocarpa cDNA clone
PX0015_L09 3', mRNA sequence
Length = 323
Score = 48.1 bits (24), Expect = 4e-004
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 159 cggcaccattgacttcatcttcggcaac 186
|||||||||||||||||| |||||||||
Sbjct: 159 cggcaccattgacttcattttcggcaac 186
>gb|DT500518.1|DT500518 PX0015.BR_L09 PT-X-FL-A-1 Populus trichocarpa cDNA clone PX0015_L09
5', mRNA sequence
Length = 324
Score = 48.1 bits (24), Expect = 4e-004
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 159 cggcaccattgacttcatcttcggcaac 186
|||||||||||||||||| |||||||||
Sbjct: 165 cggcaccattgacttcattttcggcaac 138
>gb|DT526222.1|DT526222 WS02047.C21_H05 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02047_H05 3', mRNA sequence
Length = 819
Score = 48.1 bits (24), Expect = 4e-004
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 158 ccggcaccattgacttcatcttcggcaa 185
||||||||||||||||||| ||||||||
Sbjct: 652 ccggcaccattgacttcatgttcggcaa 625
>gb|DV466001.1|DV466001 MTUNUL1.P46.A08 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 938
Score = 48.1 bits (24), Expect = 4e-004
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 158 ccggcaccattgacttcatcttcggcaa 185
||||||||||||||||||| ||||||||
Sbjct: 435 ccggcaccattgacttcatgttcggcaa 462
>gb|CV264358.1|CV264358 WS02024.B21_F01 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02024_F01 3', mRNA sequence
Length = 888
Score = 42.1 bits (21), Expect = 0.024
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 364 tacctgggccgaccctggaaggagt 388
|||||||||||||| ||||||||||
Sbjct: 384 tacctgggccgaccatggaaggagt 360
>gb|DT524640.1|DT524640 WS02043.C21_D08 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02043_D08 3', mRNA sequence
Length = 844
Score = 42.1 bits (21), Expect = 0.024
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 364 tacctgggccgaccctggaaggagt 388
|||||||||||||| ||||||||||
Sbjct: 384 tacctgggccgaccatggaaggagt 360
>gb|CX655866.1|CX655866 PO02041D02 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02041D02 5', mRNA sequence
Length = 322
Score = 38.2 bits (19), Expect = 0.37
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 507 cggccccggcgccggcaccagca 529
|||| ||||||||||||||||||
Sbjct: 166 cggcgccggcgccggcaccagca 144
>gb|CX657489.1|CX657489 PO02048B12 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02048B12 5', mRNA sequence
Length = 340
Score = 38.2 bits (19), Expect = 0.37
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 507 cggccccggcgccggcaccagca 529
|||| ||||||||||||||||||
Sbjct: 187 cggcgccggcgccggcaccagca 165
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 34,731
Number of Sequences: 369679
Number of extensions: 34731
Number of successful extensions: 8142
Number of sequences better than 0.5: 8
Number of HSP's better than 0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8134
Number of HSP's gapped (non-prelim): 8
length of query: 593
length of database: 203,408,664
effective HSP length: 19
effective length of query: 574
effective length of database: 196,384,763
effective search space: 112724853962
effective search space used: 112724853962
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)