BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3197099.2.1
(631 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AJ772440.1|AJ772440 AJ772440 Populus euphratica shoot in... 103 8e-021
gb|BU891188.1|BU891188 P047A12 Populus petioles cDNA librar... 84 7e-015
gb|BU819274.1|BU819274 UA41BPG08 Populus tremula cambium cD... 78 5e-013
gb|CK096964.1|CK096964 UB34DPA12.3pR Populus active cambium... 78 5e-013
gb|CK097248.1|CK097248 UB44DPH02.3pR Populus active cambium... 76 2e-012
gb|CK100043.1|CK100043 B006P29.5pR Hybrid aspen plasmid lib... 74 7e-012
gb|AJ770191.1|AJ770191 AJ770191 Populus euphratica leaf 3-6... 60 1e-007
gb|BU818866.1|BU818866 UA35CPF05 Populus tremula cambium cD... 56 2e-006
gb|BI127370.1|BI127370 G059P39Y Populus cambium cDNA librar... 54 7e-006
gb|BU894173.1|BU894173 X003H07 Populus wood cDNA library Po... 54 7e-006
gb|BU894478.1|BU894478 X010A02 Populus wood cDNA library Po... 54 7e-006
gb|CV267224.1|CV267224 WS02031.B21_C18 PTxN-IB-N-A-11 Popul... 54 7e-006
gb|CV269160.1|CV269160 WS0207.B21_H21 PTxN-IB-N-A-11 Populu... 54 7e-006
gb|BU895787.1|BU895787 X031A06 Populus wood cDNA library Po... 52 3e-005
gb|BU896276.1|BU896276 X038C04 Populus wood cDNA library Po... 52 3e-005
gb|BU896297.1|BU896297 X038E11 Populus wood cDNA library Po... 52 3e-005
gb|CK099351.1|CK099351 A063P66.5pR Hybrid aspen plasmid lib... 52 3e-005
gb|CV231236.1|CV231236 WS0193.B21_O22 PT-DX-N-A-10 Populus ... 52 3e-005
gb|CV241850.1|CV241850 WS02513.B21_G18 PT-MB-N-A-15 Populus... 52 3e-005
gb|CV274847.1|CV274847 WS0174.B21.1_J06 PTxD-NR-A-8 Populus... 52 3e-005
gb|DN500128.1|DN500128 UB48DPE03.5pR Populus active cambium... 52 3e-005
gb|DV464515.1|DV464515 MTUNUL1.P28.E03 NUL Populus fremonti... 52 3e-005
gb|BU880106.1|BU880106 UM41TE06 Populus flower cDNA library... 50 1e-004
gb|CK117051.1|CK117051 B024P66 Hybrid aspen plasmid library... 50 1e-004
gb|BU890263.1|BU890263 P034B07 Populus petioles cDNA librar... 48 4e-004
gb|CN524305.1|CN524305 GQ015M13.T3_E09 GQ015 Populus tricho... 48 4e-004
gb|CV227387.1|CV227387 WS0167.B21_A17 PT-DX-A-7 Populus tri... 48 4e-004
gb|CV228921.1|CV228921 WS01911.B21_K08 PT-DX-N-A-10 Populus... 48 4e-004
gb|CV276089.1|CV276089 WS0178.B21.1_J13 PTxD-NR-A-8 Populus... 48 4e-004
gb|CX171314.1|CX171314 G11_69-94_13.ab1 leaf inoculated wit... 48 4e-004
gb|DN488212.1|DN488212 R041G07.3pR Populus root cDNA librar... 48 4e-004
gb|AI166241.1|AI166241 a063p66u Hybrid aspen plasmid librar... 46 0.002
gb|BU812023.1|BU812023 UL91TD02 Populus leaf cDNA library P... 46 0.002
gb|BU898140.1|BU898140 X075D09 Populus wood cDNA library Po... 46 0.002
gb|AJ773923.1|AJ773923 AJ773923 Populus euphratica shoot 3-... 44 0.006
gb|DT516220.1|DT516220 WS02430.B21_L23 PTxD-ICC-N-A-14 Popu... 44 0.006
>gb|AJ772440.1|AJ772440 AJ772440 Populus euphratica shoot in vitro plantlet Israel Populus
euphratica cDNA clone P0001700006E12F1, mRNA sequence
Length = 418
Score = 103 bits (52), Expect = 8e-021
Identities = 154/188 (81%)
Strand = Plus / Minus
Query: 438 tagtatgcaggagggacaacacaaaccgagcgtgtgcaccgggcataagtgtagcaaagg 497
|||||||| ||||| || || |||| ||||| ||||||| ||||| |||||||| ||
Sbjct: 300 tagtatgctggaggaactactgaaacagagcgagtgcacctagcatacgtgtagcagaga 241
Query: 498 ttgtttggcaatggctgcatttcgtctgctgtgaaattgttctcatcccagaggacatgg 557
||||||| ||| | ||| ||| | || |||||||| |||||||||||||| | |||||
Sbjct: 240 ttgtttgtcaaagactggattccatcagctgtgaagttgttctcatcccacaaaacatga 181
Query: 558 gagtgagcaggcctactcgttccctggattccagcatgactacagaggtagaaatcaaac 617
||||||| |||||||| || ||||| || |||||||| |||||||| ||||| ||||||
Sbjct: 180 tagtgagctggcctacttgtcccctgaataccagcatggctacagagatagaagtcaaac 121
Query: 618 tccgttgg 625
|| |||||
Sbjct: 120 tctgttgg 113
>gb|BU891188.1|BU891188 P047A12 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 494
Score = 83.8 bits (42), Expect = 7e-015
Identities = 189/238 (79%)
Strand = Plus / Minus
Query: 391 tctctggttccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggag 450
||||||||||||||||||| ||||| || ||||| || | ||||||||||||||||| |
Sbjct: 252 tctctggttccatgtagaaacgagctcggaatgcagcaagatgtgcgtagtatgcaggtg 193
Query: 451 ggacaacacaaaccgagcgtgtgcaccgggcataagtgtagcaaaggttgtttggcaatg 510
| |||| |||| || || ||||| | ||||| ||||||||||| ||||||| | |
Sbjct: 192 gcacaatggaaacagaacgcgtgcatcttgcatatgtgtagcaaagattgtttgtaaggg 133
Query: 511 gctgcatttcgtctgctgtgaaattgttctcatcccagaggacatgggagtgagcaggcc 570
||||| | || || ||||| |||||||| ||||| || |||||| | ||||| || |
Sbjct: 132 actgcaacccatcagcagtgaacttgttctcgtcccaaagtacatggtaatgagctggac 73
Query: 571 tactcgttccctggattccagcatgactacagaggtagaaatcaaactccgttgggtg 628
|| || ||||| || |||||||||||||| || ||||| | |||||||||||||||
Sbjct: 72 ggcttgtaccctgaatcccagcatgactacacagatagaagttaaactccgttgggtg 15
>gb|BU819274.1|BU819274 UA41BPG08 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 627
Score = 77.8 bits (39), Expect = 5e-013
Identities = 153/191 (80%)
Strand = Plus / Minus
Query: 432 tgtgcgtagtatgcaggagggacaacacaaaccgagcgtgtgcaccgggcataagtgtag 491
||||| |||||||| ||||| || || |||| ||||| ||||||| || || |||||
Sbjct: 228 tgtgcatagtatgcgggaggaaccactgaaacagagcgcgtgcaccttgcgtatgtgtaa 169
Query: 492 caaaggttgtttggcaatggctgcatttcgtctgctgtgaaattgttctcatcccagagg 551
|| || ||||||| ||| | ||| ||| | || ||||||||||||||||||||||| |
Sbjct: 168 cagagattgtttgtcaaggactggattccatcagctgtgaaattgttctcatcccacaaa 109
Query: 552 acatgggagtgagcaggcctactcgttccctggattccagcatgactacagaggtagaaa 611
||||| |||| || || ||||| |||||||| || |||||||| |||||||| || ||
Sbjct: 108 acatgatagtgtgctggtctacttgttccctgaataccagcatggctacagagataaaag 49
Query: 612 tcaaactccgt 622
||||| |||||
Sbjct: 48 tcaaattccgt 38
>gb|CK096964.1|CK096964 UB34DPA12.3pR Populus active cambium cDNA library Populus tremula
cDNA clone UB34DPA12 3', mRNA sequence
Length = 646
Score = 77.8 bits (39), Expect = 5e-013
Identities = 153/191 (80%)
Strand = Plus / Plus
Query: 432 tgtgcgtagtatgcaggagggacaacacaaaccgagcgtgtgcaccgggcataagtgtag 491
||||| |||||||| ||||| || || |||| ||||| ||||||| || || |||||
Sbjct: 374 tgtgcatagtatgcgggaggaaccactgaaacagagcgcgtgcacctcgcgtatgtgtaa 433
Query: 492 caaaggttgtttggcaatggctgcatttcgtctgctgtgaaattgttctcatcccagagg 551
|| || ||||||| ||| | ||| ||| | || ||||||||||||||||||||||| |
Sbjct: 434 cagagattgtttgtcaaggactggattccatcagctgtgaaattgttctcatcccacaaa 493
Query: 552 acatgggagtgagcaggcctactcgttccctggattccagcatgactacagaggtagaaa 611
||||| |||| || || ||||| |||||||| || |||||||| |||||||| || ||
Sbjct: 494 acatgatagtgtgctggtctacttgttccctgaataccagcatggctacagagataaaag 553
Query: 612 tcaaactccgt 622
||||| |||||
Sbjct: 554 tcaaattccgt 564
>gb|CK097248.1|CK097248 UB44DPH02.3pR Populus active cambium cDNA library Populus tremula
cDNA clone UB44DPH02 3', mRNA sequence
Length = 762
Score = 75.8 bits (38), Expect = 2e-012
Identities = 188/238 (78%)
Strand = Plus / Plus
Query: 391 tctctggttccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggag 450
||||||||||||||||||| ||||| || ||||| || | ||||||||||||||||| |
Sbjct: 230 tctctggttccatgtagaaacgagctcggaatgcagcaagatgtgcgtagtatgcaggtg 289
Query: 451 ggacaacacaaaccgagcgtgtgcaccgggcataagtgtagcaaaggttgtttggcaatg 510
| |||| |||| || || ||||| | ||||| ||||||||||| ||||||| | |
Sbjct: 290 gcacaatggaaacagaacgcgtgcatcttgcatatgtgtagcaaagattgtttgtaaggg 349
Query: 511 gctgcatttcgtctgctgtgaaattgttctcatcccagaggacatgggagtgagcaggcc 570
||||| | || || ||||| |||||||| ||||| || |||||| | ||||| || |
Sbjct: 350 actgcaacccatcagcagtgaacttgttctcgtcccaaagtacatggtaatgagctggac 409
Query: 571 tactcgttccctggattccagcatgactacagaggtagaaatcaaactccgttgggtg 628
|| || ||||| || |||||||||||||| | ||||| |||||||| ||||||||
Sbjct: 410 ggcttgtaccctgaatcccagcatgactacacaaatagaagtcaaactctgttgggtg 467
>gb|CK100043.1|CK100043 B006P29.5pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone B006P29 5', mRNA sequence
Length = 475
Score = 73.8 bits (37), Expect = 7e-012
Identities = 85/101 (84%)
Strand = Plus / Minus
Query: 525 gctgtgaaattgttctcatcccagaggacatgggagtgagcaggcctactcgttccctgg 584
||||||||||||||||||||||| | ||||| |||| || || ||||| ||||||||
Sbjct: 353 gctgtgaaattgttctcatcccacaaaacatgatagtgtgctggtctacttgttccctga 294
Query: 585 attccagcatgactacagaggtagaaatcaaactccgttgg 625
|| |||||||| |||||||| || || ||||| ||||||||
Sbjct: 293 ataccagcatggctacagagataaaagtcaaattccgttgg 253
>gb|AJ770191.1|AJ770191 AJ770191 Populus euphratica leaf 3-6 months, adult Populus
euphratica cDNA clone P0001100008E12F1, mRNA sequence
Length = 423
Score = 60.0 bits (30), Expect = 1e-007
Identities = 93/114 (81%)
Strand = Plus / Minus
Query: 391 tctctggttccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggag 450
||||||||||||||||||| ||||| || ||||| || | ||||| ||||||||||| |
Sbjct: 161 tctctggttccatgtagaaacgagctcggaatgcggcaagatgtgcatagtatgcaggtg 102
Query: 451 ggacaacacaaaccgagcgtgtgcaccgggcataagtgtagcaaaggttgtttg 504
| |||| |||| || || ||||| | ||||| ||||||||||| |||||||
Sbjct: 101 gcacaatggaaacagaacgggtgcatcttgcatatgtgtagcaaagattgtttg 48
>gb|BU818866.1|BU818866 UA35CPF05 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 503
Score = 56.0 bits (28), Expect = 2e-006
Identities = 67/80 (83%)
Strand = Plus / Minus
Query: 552 acatgggagtgagcaggcctactcgttccctggattccagcatgactacagaggtagaaa 611
|||||| |||| | |||||| || |||||||| |||||||| ||||| |||||||||
Sbjct: 204 acatggtagtgtgtaggcctgctagttccctgaattccagcgtgactgttaaggtagaaa 145
Query: 612 tcaaactccgttgggtggca 631
|||||||| || ||||||||
Sbjct: 144 tcaaactctgtagggtggca 125
>gb|BI127370.1|BI127370 G059P39Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 502
Score = 54.0 bits (27), Expect = 7e-006
Identities = 165/211 (78%)
Strand = Plus / Minus
Query: 391 tctctggttccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggag 450
||||||||||||||||||| ||||| || ||||| || | || || ||||||||||| |
Sbjct: 491 tctctggttccatgtagaaacgagctcgaaatgcagcaagatgagcatagtatgcaggtg 432
Query: 451 ggacaacacaaaccgagcgtgtgcaccgggcataagtgtagcaaaggttgtttggcaatg 510
| |||| |||| || || ||||| || ||||| |||||||| || ||||||| || |
Sbjct: 431 gcacaatggaaacagaacgcgtgcatcgtgcatatgtgtagcacagattgtttgtcaggg 372
Query: 511 gctgcatttcgtctgctgtgaaattgttctcatcccagaggacatgggagtgagcaggcc 570
||||| | || || || || |||||||||||||| || |||||| ||||||| || |
Sbjct: 371 actgcaacccatcagcagtaaacttgttctcatcccaaagtacatggtagtgagctggac 312
Query: 571 tactcgttccctggattccagcatgactaca 601
|| || ||||| || || |||||||||||
Sbjct: 311 ggcttgtgccctgaatcccggcatgactaca 281
>gb|BU894173.1|BU894173 X003H07 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 618
Score = 54.0 bits (27), Expect = 7e-006
Identities = 165/211 (78%)
Strand = Plus / Minus
Query: 391 tctctggttccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggag 450
||||||||||||||||||| ||||| || ||||| || | || || ||||||||||| |
Sbjct: 571 tctctggttccatgtagaaacgagctcgaaatgcagcaagatgagcatagtatgcaggtg 512
Query: 451 ggacaacacaaaccgagcgtgtgcaccgggcataagtgtagcaaaggttgtttggcaatg 510
| |||| |||| || || ||||| || ||||| |||||||| || ||||||| || |
Sbjct: 511 gcacaatggaaacagaacgcgtgcatcgtgcatatgtgtagcacagattgtttgtcaggg 452
Query: 511 gctgcatttcgtctgctgtgaaattgttctcatcccagaggacatgggagtgagcaggcc 570
||||| | || || || || |||||||||||||| || |||||| ||||||| || |
Sbjct: 451 actgcaacccatcagcagtaaacttgttctcatcccaaagtacatggtagtgagctggac 392
Query: 571 tactcgttccctggattccagcatgactaca 601
|| || ||||| || || |||||||||||
Sbjct: 391 ggcttgtgccctgaatcccggcatgactaca 361
>gb|BU894478.1|BU894478 X010A02 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 650
Score = 54.0 bits (27), Expect = 7e-006
Identities = 165/211 (78%)
Strand = Plus / Minus
Query: 391 tctctggttccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggag 450
||||||||||||||||||| ||||| || ||||| || | || || ||||||||||| |
Sbjct: 303 tctctggttccatgtagaaacgagctcgaaatgcagcaagatgagcatagtatgcaggtg 244
Query: 451 ggacaacacaaaccgagcgtgtgcaccgggcataagtgtagcaaaggttgtttggcaatg 510
| |||| |||| || || ||||| || ||||| |||||||| || ||||||| || |
Sbjct: 243 gcacaatggaaacagaacgcgtgcatcgtgcatatgtgtagcacagattgtttgtcaggg 184
Query: 511 gctgcatttcgtctgctgtgaaattgttctcatcccagaggacatgggagtgagcaggcc 570
||||| | || || || || |||||||||||||| || |||||| ||||||| || |
Sbjct: 183 actgcaacccatcagcagtaaacttgttctcatcccaaagtacatggtagtgagctggac 124
Query: 571 tactcgttccctggattccagcatgactaca 601
|| || ||||| || || |||||||||||
Sbjct: 123 ggcttgtgccctgaatcccggcatgactaca 93
>gb|CV267224.1|CV267224 WS02031.B21_C18 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02031_C18 3', mRNA sequence
Length = 960
Score = 54.0 bits (27), Expect = 7e-006
Identities = 165/211 (78%)
Strand = Plus / Plus
Query: 391 tctctggttccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggag 450
||||||| ||||||||||| ||||| || ||||| || | || || ||||||||||| |
Sbjct: 457 tctctggctccatgtagaaacgagctcgaaatgcagcaagatgagcatagtatgcaggtg 516
Query: 451 ggacaacacaaaccgagcgtgtgcaccgggcataagtgtagcaaaggttgtttggcaatg 510
| |||| |||| || || ||||| || ||||| ||||||||||| ||||||| || |
Sbjct: 517 gcacaatggaaacagatcgcgtgcatcgtgcatatgtgtagcaaagattgtttgtcaggg 576
Query: 511 gctgcatttcgtctgctgtgaaattgttctcatcccagaggacatgggagtgagcaggcc 570
||||| | || || || || |||||||||||||| || |||||| | ||||| || |
Sbjct: 577 actgcagcccatcagcagtaaacttgttctcatcccaaagtacatggtaatgagctggac 636
Query: 571 tactcgttccctggattccagcatgactaca 601
|| || ||||| || ||||||||||||||
Sbjct: 637 ggcttgtgccctgaatcccagcatgactaca 667
>gb|CV269160.1|CV269160 WS0207.B21_H21 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0207_H21 3', mRNA sequence
Length = 688
Score = 54.0 bits (27), Expect = 7e-006
Identities = 165/211 (78%)
Strand = Plus / Plus
Query: 391 tctctggttccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggag 450
||||||| ||||||||||| ||||| || ||||| || | || || ||||||||||| |
Sbjct: 457 tctctggctccatgtagaaacgagctcgaaatgcagcaagatgagcatagtatgcaggtg 516
Query: 451 ggacaacacaaaccgagcgtgtgcaccgggcataagtgtagcaaaggttgtttggcaatg 510
| |||| |||| || || ||||| || ||||| ||||||||||| ||||||| || |
Sbjct: 517 gcacaatggaaacagatcgcgtgcatcgtgcatatgtgtagcaaagattgtttgtcaggg 576
Query: 511 gctgcatttcgtctgctgtgaaattgttctcatcccagaggacatgggagtgagcaggcc 570
||||| | || || || || |||||||||||||| || |||||| | ||||| || |
Sbjct: 577 actgcagcccatcagcagtaaacttgttctcatcccaaagtacatggtaatgagctggac 636
Query: 571 tactcgttccctggattccagcatgactaca 601
|| || ||||| || ||||||||||||||
Sbjct: 637 ggcttgtgccctgaatcccagcatgactaca 667
>gb|BU895787.1|BU895787 X031A06 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 568
Score = 52.0 bits (26), Expect = 3e-005
Identities = 92/114 (80%)
Strand = Plus / Minus
Query: 391 tctctggttccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggag 450
||||||||||||||||||| ||||| || ||||| || | || || ||||||||||| |
Sbjct: 192 tctctggttccatgtagaaacgagctcgaaatgcagcaagatgagcatagtatgcaggtg 133
Query: 451 ggacaacacaaaccgagcgtgtgcaccgggcataagtgtagcaaaggttgtttg 504
| |||| |||| || || ||||| || ||||| |||||||| || |||||||
Sbjct: 132 gcacaatggaaacagaacgcgtgcatcgtgcatatgtgtagcacagattgtttg 79
>gb|BU896276.1|BU896276 X038C04 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 679
Score = 52.0 bits (26), Expect = 3e-005
Identities = 92/114 (80%)
Strand = Plus / Minus
Query: 391 tctctggttccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggag 450
||||||||||||||||||| ||||| || ||||| || | || || ||||||||||| |
Sbjct: 290 tctctggttccatgtagaaacgagctcgaaatgcagcaagatgagcatagtatgcaggtg 231
Query: 451 ggacaacacaaaccgagcgtgtgcaccgggcataagtgtagcaaaggttgtttg 504
| |||| |||| || || ||||| || ||||| |||||||| || |||||||
Sbjct: 230 gcacaatggaaacagaacgcgtgcatcgtgcatatgtgtagcacagattgtttg 177
>gb|BU896297.1|BU896297 X038E11 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 666
Score = 52.0 bits (26), Expect = 3e-005
Identities = 92/114 (80%)
Strand = Plus / Minus
Query: 391 tctctggttccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggag 450
||||||||||||||||||| ||||| || ||||| || | || || ||||||||||| |
Sbjct: 290 tctctggttccatgtagaaacgagctcgaaatgcagcaagatgagcatagtatgcaggtg 231
Query: 451 ggacaacacaaaccgagcgtgtgcaccgggcataagtgtagcaaaggttgtttg 504
| |||| |||| || || ||||| || ||||| |||||||| || |||||||
Sbjct: 230 gcacaatggaaacagaacgcgtgcatcgtgcatatgtgtagcacagattgtttg 177
>gb|CK099351.1|CK099351 A063P66.5pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A063P66 5', mRNA sequence
Length = 546
Score = 52.0 bits (26), Expect = 3e-005
Identities = 92/114 (80%)
Strand = Plus / Minus
Query: 391 tctctggttccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggag 450
||||||||||||||||||| ||||| || ||||| || | || || ||||||||||| |
Sbjct: 280 tctctggttccatgtagaaacgagctcgaaatgcagcaagatgagcatagtatgcaggtg 221
Query: 451 ggacaacacaaaccgagcgtgtgcaccgggcataagtgtagcaaaggttgtttg 504
| |||| |||| || || ||||| || ||||| |||||||| || |||||||
Sbjct: 220 gcacaatggaaacagaacgcgtgcatcgtgcatatgtgtagcacagattgtttg 167
>gb|CV231236.1|CV231236 WS0193.B21_O22 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0193_O22 3', mRNA sequence
Length = 875
Score = 52.0 bits (26), Expect = 3e-005
Identities = 185/238 (77%)
Strand = Plus / Plus
Query: 391 tctctggttccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggag 450
|||| |||||||||||||| ||||| || ||||| || | ||||| || |||||||| |
Sbjct: 365 tctccggttccatgtagaaacgagctcggaatgcagcaagatgtgcataatatgcaggtg 424
Query: 451 ggacaacacaaaccgagcgtgtgcaccgggcataagtgtagcaaaggttgtttggcaatg 510
| |||| |||| || || ||||| | ||||| ||||||||||| ||||||| | |
Sbjct: 425 gcacaatggaaacagaacgcgtgcatcttgcatatgtgtagcaaagattgtttgtaagag 484
Query: 511 gctgcatttcgtctgctgtgaaattgttctcatcccagaggacatgggagtgagcaggcc 570
||||| | || || ||||| |||||||||||||| || |||||| | ||||| || |
Sbjct: 485 actgcaacccatcagcagtgaacttgttctcatcccaaagtacatggtaatgagctggac 544
Query: 571 tactcgttccctggattccagcatgactacagaggtagaaatcaaactccgttgggtg 628
|| || ||||| || |||||||||||||| | ||||| || ||||| ||||||||
Sbjct: 545 ggcttgtaccctgaatcccagcatgactacacaaatagaagtcgaactctgttgggtg 602
>gb|CV241850.1|CV241850 WS02513.B21_G18 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02513_G18 3', mRNA sequence
Length = 677
Score = 52.0 bits (26), Expect = 3e-005
Identities = 92/114 (80%)
Strand = Plus / Plus
Query: 391 tctctggttccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggag 450
||||||| ||||||||||| ||||| || ||||| || | || || ||||||||||| |
Sbjct: 446 tctctggctccatgtagaaacgagctcgaaatgcagcaagatgagcatagtatgcaggtg 505
Query: 451 ggacaacacaaaccgagcgtgtgcaccgggcataagtgtagcaaaggttgtttg 504
| |||| |||| || || ||||| || ||||| ||||||||||| |||||||
Sbjct: 506 gcacaatggaaacagatcgcgtgcatcgtgcatatgtgtagcaaagattgtttg 559
>gb|CV274847.1|CV274847 WS0174.B21.1_J06 PTxD-NR-A-8 Populus trichocarpa x Populus
deltoides cDNA clone WS0174_J06 3', mRNA sequence
Length = 849
Score = 52.0 bits (26), Expect = 3e-005
Identities = 92/114 (80%)
Strand = Plus / Plus
Query: 391 tctctggttccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggag 450
||||||| ||||||||||| ||||| || ||||| || | || || ||||||||||| |
Sbjct: 446 tctctggctccatgtagaaacgagctcgaaatgcagcaagatgagcatagtatgcaggtg 505
Query: 451 ggacaacacaaaccgagcgtgtgcaccgggcataagtgtagcaaaggttgtttg 504
| |||| |||| || || ||||| || ||||| ||||||||||| |||||||
Sbjct: 506 gcacaatggaaacagatcgcgtgcatcgtgcatatgtgtagcaaagattgtttg 559
>gb|DN500128.1|DN500128 UB48DPE03.5pR Populus active cambium cDNA library Populus tremula
cDNA clone UB48DPE03 5', mRNA sequence
Length = 522
Score = 52.0 bits (26), Expect = 3e-005
Identities = 92/114 (80%)
Strand = Plus / Minus
Query: 391 tctctggttccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggag 450
||||||||||||||||||| ||||| || ||||| || | || || ||||||||||| |
Sbjct: 183 tctctggttccatgtagaaacgagctcgaaatgcagcaagatgagcatagtatgcaggtg 124
Query: 451 ggacaacacaaaccgagcgtgtgcaccgggcataagtgtagcaaaggttgtttg 504
| |||| |||| || || ||||| || ||||| |||||||| || |||||||
Sbjct: 123 gcacaatggaaacagaacgcgtgcatcgtgcatatgtgtagcacagattgtttg 70
>gb|DV464515.1|DV464515 MTUNUL1.P28.E03 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 830
Score = 52.0 bits (26), Expect = 3e-005
Identities = 92/114 (80%)
Strand = Plus / Plus
Query: 391 tctctggttccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggag 450
||||||| ||||||||||| ||||| || ||||| || | || || ||||||||||| |
Sbjct: 441 tctctggctccatgtagaaacgagctcgaaatgcagcaagatgagcatagtatgcaggtg 500
Query: 451 ggacaacacaaaccgagcgtgtgcaccgggcataagtgtagcaaaggttgtttg 504
| |||| |||| || || ||||| || ||||| ||||||||||| |||||||
Sbjct: 501 gcacaatggaaacagatcgcgtgcatcgtgcatatgtgtagcaaagattgtttg 554
>gb|BU880106.1|BU880106 UM41TE06 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 610
Score = 50.1 bits (25), Expect = 1e-004
Identities = 82/101 (81%)
Strand = Plus / Minus
Query: 528 gtgaaattgttctcatcccagaggacatgggagtgagcaggcctactcgttccctggatt 587
||||| |||||||||||||| || |||||| | ||||| || | || || ||||| ||
Sbjct: 493 gtgaacttgttctcatcccaaagtacatggtaatgagctggacggcttgtaccctgaatc 434
Query: 588 ccagcatgactacagaggtagaaatcaaactccgttgggtg 628
|||||||||||||| | ||||| || ||||| ||||||||
Sbjct: 433 ccagcatgactacacaaatagaagtcgaactctgttgggtg 393
>gb|CK117051.1|CK117051 B024P66 Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone B024P66 5', mRNA sequence
Length = 276
Score = 50.1 bits (25), Expect = 1e-004
Identities = 82/101 (81%)
Strand = Plus / Minus
Query: 528 gtgaaattgttctcatcccagaggacatgggagtgagcaggcctactcgttccctggatt 587
||||| |||||||| ||||| || |||||| | ||||| || | || || ||||| ||
Sbjct: 244 gtgaacttgttctcgtcccaaagtacatggtaatgagctggacggcttgtaccctgaatc 185
Query: 588 ccagcatgactacagaggtagaaatcaaactccgttgggtg 628
|||||||||||||| | ||||| |||||||| ||||||||
Sbjct: 184 ccagcatgactacacaaatagaagtcaaactctgttgggtg 144
>gb|BU890263.1|BU890263 P034B07 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 548
Score = 48.1 bits (24), Expect = 4e-004
Identities = 90/112 (80%)
Strand = Plus / Minus
Query: 391 tctctggttccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggag 450
||||||||||||||||||| ||||| || ||||| || | || || ||||||||||| |
Sbjct: 141 tctctggttccatgtagaaacgagctcgaaatgcagcaagatgagcatagtatgcaggtg 82
Query: 451 ggacaacacaaaccgagcgtgtgcaccgggcataagtgtagcaaaggttgtt 502
| |||| |||| || || ||||| || ||||| |||||||| || |||||
Sbjct: 81 gcacaatggaaacagaacgcgtgcatcgtgcatatgtgtagcacagattgtt 30
>gb|CN524305.1|CN524305 GQ015M13.T3_E09 GQ015 Populus trichocarpa x Populus deltoides cDNA
clone GQ015M13_E09 5', mRNA sequence
Length = 849
Score = 48.1 bits (24), Expect = 4e-004
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 576 gttccctggattccagcatgactacagaggtagaaatcaaactccgttgggtggca 631
|||||||| |||||||| ||||| ||||||||||||||||| || ||||||||
Sbjct: 367 gttccctgaattccagcgtgactgttaaggtagaaatcaaactctgtagggtggca 312
>gb|CV227387.1|CV227387 WS0167.B21_A17 PT-DX-A-7 Populus trichocarpa cDNA clone WS0167_A17
3', mRNA sequence
Length = 709
Score = 48.1 bits (24), Expect = 4e-004
Identities = 90/112 (80%)
Strand = Plus / Minus
Query: 391 tctctggttccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggag 450
||||||| ||||||||||| ||||| || ||||| || | || || ||||||||||| |
Sbjct: 249 tctctggctccatgtagaaacgagctcgaaatgcagcaagatgagcatagtatgcaggtg 190
Query: 451 ggacaacacaaaccgagcgtgtgcaccgggcataagtgtagcaaaggttgtt 502
| |||| |||| || || ||||| || ||||| ||||||||||| |||||
Sbjct: 189 gcacaatggaaacagatcgcgtgcatcgtgcatatgtgtagcaaagattgtt 138
>gb|CV228921.1|CV228921 WS01911.B21_K08 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01911_K08 3', mRNA sequence
Length = 563
Score = 48.1 bits (24), Expect = 4e-004
Identities = 90/112 (80%)
Strand = Plus / Plus
Query: 391 tctctggttccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggag 450
||||||| ||||||||||| ||||| || ||||| || | || || ||||||||||| |
Sbjct: 425 tctctggctccatgtagaaacgagctcgaaatgcagcaagatgagcatagtatgcaggtg 484
Query: 451 ggacaacacaaaccgagcgtgtgcaccgggcataagtgtagcaaaggttgtt 502
| |||| |||| || || ||||| || ||||| ||||||||||| |||||
Sbjct: 485 gcacaatggaaacagatcgcgtgcatcgtgcatatgtgtagcaaagattgtt 536
>gb|CV276089.1|CV276089 WS0178.B21.1_J13 PTxD-NR-A-8 Populus trichocarpa x Populus
deltoides cDNA clone WS0178_J13 3', mRNA sequence
Length = 618
Score = 48.1 bits (24), Expect = 4e-004
Identities = 90/112 (80%)
Strand = Plus / Plus
Query: 391 tctctggttccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggag 450
||||||| ||||||||||| ||||| || ||||| || | || || ||||||||||| |
Sbjct: 431 tctctggctccatgtagaaacgagctcgaaatgcagcaagatgagcatagtatgcaggtg 490
Query: 451 ggacaacacaaaccgagcgtgtgcaccgggcataagtgtagcaaaggttgtt 502
| |||| |||| || || ||||| || ||||| ||||||||||| |||||
Sbjct: 491 gcacaatggaaacagatcgcgtgcatcgtgcatatgtgtagcaaagattgtt 542
>gb|CX171314.1|CX171314 G11_69-94_13.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 555
Score = 48.1 bits (24), Expect = 4e-004
Identities = 90/112 (80%)
Strand = Plus / Minus
Query: 391 tctctggttccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggag 450
||||||| ||||||||||| ||||| || ||||| || | || || ||||||||||| |
Sbjct: 327 tctctggctccatgtagaaacgagctcgaaatgcagcaagatgagcatagtatgcaggtg 268
Query: 451 ggacaacacaaaccgagcgtgtgcaccgggcataagtgtagcaaaggttgtt 502
| |||| |||| || || ||||| || ||||| ||||||||||| |||||
Sbjct: 267 gcacaatggaaacagatcgcgtgcatcgtgcatatgtgtagcaaagattgtt 216
>gb|DN488212.1|DN488212 R041G07.3pR Populus root cDNA library Populus tremula x Populus
tremuloides cDNA clone R041G07 3', mRNA sequence
Length = 811
Score = 48.1 bits (24), Expect = 4e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 576 gttccctggattccagcatgactacagaggtagaaatcaaactccgttgggtggca 631
|||||||| |||||||||||||| |||||||| |||||||| || ||||||||
Sbjct: 553 gttccctgaattccagcatgactgttaaggtagaagtcaaactctgtagggtggca 608
>gb|AI166241.1|AI166241 a063p66u Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 382
Score = 46.1 bits (23), Expect = 0.002
Identities = 91/114 (79%)
Strand = Plus / Minus
Query: 391 tctctggttccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggag 450
||||||||||||||||||| ||||| || ||||| || | || || ||||||||||| |
Sbjct: 255 tctctggttccatgtagaaacgagctcgaaatgcagcaagatgagcatagtatgcaggtg 196
Query: 451 ggacaacacaaaccgagcgtgtgcaccgggcataagtgtagcaaaggttgtttg 504
| |||| |||| || || ||||| || |||| |||||||| || |||||||
Sbjct: 195 gcacaatggaaacagaacgcgtgcatcgtgcatntgtgtagcacagattgtttg 142
>gb|BU812023.1|BU812023 UL91TD02 Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 616
Score = 46.1 bits (23), Expect = 0.002
Identities = 91/114 (79%)
Strand = Plus / Minus
Query: 391 tctctggttccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggag 450
|||||||||||||||||| ||||| || ||||| || | || || ||||||||||| |
Sbjct: 527 tctctggttccatgtaganacgagctcgaaatgcagcaagatgagcatagtatgcaggtg 468
Query: 451 ggacaacacaaaccgagcgtgtgcaccgggcataagtgtagcaaaggttgtttg 504
| |||| |||| || || ||||| || ||||| |||||||| || |||||||
Sbjct: 467 gcacaatggaaacagaacgcgtgcatcgtgcatatgtgtagcacagattgtttg 414
>gb|BU898140.1|BU898140 X075D09 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 623
Score = 46.1 bits (23), Expect = 0.002
Identities = 164/211 (77%)
Strand = Plus / Minus
Query: 391 tctctggttccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggag 450
||||||||||||||||||| ||||| || ||||| | | || || ||||||||||| |
Sbjct: 364 tctctggttccatgtagaaacgagctcgaaatgcaacaagatgagcatagtatgcaggtg 305
Query: 451 ggacaacacaaaccgagcgtgtgcaccgggcataagtgtagcaaaggttgtttggcaatg 510
| |||| |||| || || ||||| || ||||| |||||||| || ||||||| || |
Sbjct: 304 gcacaatggaaacagaacgcgtgcatcgcgcatatgtgtagcacagattgtttgtcaggg 245
Query: 511 gctgcatttcgtctgctgtgaaattgttctcatcccagaggacatgggagtgagcaggcc 570
||||| | || || || || |||||||||||||| || |||||| ||||||| || |
Sbjct: 244 actgcaacccatcagcagtaaacttgttctcatcccaaagtacatggtagtgagctggac 185
Query: 571 tactcgttccctggattccagcatgactaca 601
|| || ||||| || || |||||||||||
Sbjct: 184 ggcttgtgccctgaatcccggcatgactaca 154
>gb|AJ773923.1|AJ773923 AJ773923 Populus euphratica shoot 3-6 months Populus euphratica
cDNA clone P0000300006F03F1, mRNA sequence
Length = 586
Score = 44.1 bits (22), Expect = 0.006
Identities = 91/114 (79%)
Strand = Plus / Minus
Query: 391 tctctggttccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggag 450
||||||| ||||||||||| || || || ||||| || | || || ||||||||||| |
Sbjct: 148 tctctggctccatgtagaaacgggctcgaaatgcagcaagatgagcatagtatgcaggtg 89
Query: 451 ggacaacacaaaccgagcgtgtgcaccgggcataagtgtagcaaaggttgtttg 504
| || | |||| || || ||||| |||||||| ||||||||||| |||||||
Sbjct: 88 gcactatggaaacagatcgcgtgcatcgggcatatgtgtagcaaagattgtttg 35
>gb|DT516220.1|DT516220 WS02430.B21_L23 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02430_L23 3', mRNA sequence
Length = 910
Score = 44.1 bits (22), Expect = 0.006
Identities = 91/114 (79%)
Strand = Plus / Plus
Query: 391 tctctggttccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggag 450
||||||| ||||||||||| ||||| || ||||| || | || || ||||||||||| |
Sbjct: 470 tctctggctccatgtagaaacgagctcgaaatgcagcaagatgagcatagtatgcaggtg 529
Query: 451 ggacaacacaaaccgagcgtgtgcaccgggcataagtgtagcaaaggttgtttg 504
| |||| |||| || | ||||| || ||||| ||||||||||| |||||||
Sbjct: 530 gcacaatggaaacagatctcgtgcatcgtgcatatgtgtagcaaagattgtttg 583
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 71,801
Number of Sequences: 369679
Number of extensions: 71801
Number of successful extensions: 19100
Number of sequences better than 0.5: 36
Number of HSP's better than 0.5 without gapping: 35
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 19009
Number of HSP's gapped (non-prelim): 85
length of query: 631
length of database: 203,408,664
effective HSP length: 19
effective length of query: 612
effective length of database: 196,384,763
effective search space: 120187474956
effective search space used: 120187474956
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)