BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3191495.2.1
(1277 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF232411.1|CF232411 PtaJXO0010B6G0713 Poplar cDNA librar... 44 0.013
gb|CN549526.1|CN549526 GQ0243.B3_F02 GQ024 Populus trichoca... 44 0.013
gb|CV240975.1|CV240975 WS02510.B21_O01 PT-MB-N-A-15 Populus... 44 0.013
gb|CV253716.1|CV253716 WS0222.B21_M11 PTxD-ICC-A-12 Populus... 44 0.013
gb|CX169126.1|CX169126 C06_69-30_06.ab1 leaf inoculated wit... 44 0.013
gb|DT488876.1|DT488876 WS02537.B21_L01 PT-MB-N-A-15 Populus... 44 0.013
gb|DT524055.1|DT524055 WS02041.C21.1_G16 PTxN-IB-N-A-11 Pop... 44 0.013
gb|AC149486.1| Populus trichocarpa clone Pop1-8L22, complet... 42 0.052
gb|AC149543.1| Populus trichocarpa clone Pop1-47M20, comple... 42 0.052
gb|AC149575.1| Populus trichocarpa clone Pop1-41G18, comple... 42 0.052
gb|BU892155.1|BU892155 P060A10 Populus petioles cDNA librar... 40 0.20
>gb|CF232411.1|CF232411 PtaJXO0010B6G0713 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 604
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1015 cttctccatcttcttcatctccatat 1040
|||||||||||||||||||| |||||
Sbjct: 344 cttctccatcttcttcatcttcatat 319
>gb|CN549526.1|CN549526 GQ0243.B3_F02 GQ024 Populus trichocarpa x Populus deltoides cDNA
clone GQ0243_F02 5', mRNA sequence
Length = 635
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1015 cttctccatcttcttcatctccatat 1040
|||||||||||||||||||| |||||
Sbjct: 345 cttctccatcttcttcatcttcatat 320
>gb|CV240975.1|CV240975 WS02510.B21_O01 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02510_O01 3', mRNA sequence
Length = 731
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1015 cttctccatcttcttcatctccatat 1040
|||||||||||||||||||| |||||
Sbjct: 282 cttctccatcttcttcatcttcatat 307
>gb|CV253716.1|CV253716 WS0222.B21_M11 PTxD-ICC-A-12 Populus trichocarpa x Populus deltoides
cDNA clone WS0222_M11 3', mRNA sequence
Length = 698
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1015 cttctccatcttcttcatctccatat 1040
|||||||||||||||||||| |||||
Sbjct: 312 cttctccatcttcttcatcttcatat 337
>gb|CX169126.1|CX169126 C06_69-30_06.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 487
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1015 cttctccatcttcttcatctccatat 1040
|||||||||||||||||||| |||||
Sbjct: 129 cttctccatcttcttcatcttcatat 154
>gb|DT488876.1|DT488876 WS02537.B21_L01 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02537_L01 3', mRNA sequence
Length = 909
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1015 cttctccatcttcttcatctccatat 1040
|||||||||||||||||||| |||||
Sbjct: 283 cttctccatcttcttcatcttcatat 308
>gb|DT524055.1|DT524055 WS02041.C21.1_G16 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02041_G16 3', mRNA sequence
Length = 899
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1015 cttctccatcttcttcatctccatat 1040
|||||||||||||||||||| |||||
Sbjct: 331 cttctccatcttcttcatcttcatat 356
>gb|AC149486.1| Populus trichocarpa clone Pop1-8L22, complete sequence
Length = 66066
Score = 42.1 bits (21), Expect = 0.052
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1013 tccttctccatcttcttcatc 1033
|||||||||||||||||||||
Sbjct: 24948 tccttctccatcttcttcatc 24928
>gb|AC149543.1| Populus trichocarpa clone Pop1-47M20, complete sequence
Length = 68256
Score = 42.1 bits (21), Expect = 0.052
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1013 tccttctccatcttcttcatc 1033
|||||||||||||||||||||
Sbjct: 1478 tccttctccatcttcttcatc 1458
>gb|AC149575.1| Populus trichocarpa clone Pop1-41G18, complete sequence
Length = 111678
Score = 42.1 bits (21), Expect = 0.052
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1013 tccttctccatcttcttcatc 1033
|||||||||||||||||||||
Sbjct: 87561 tccttctccatcttcttcatc 87541
>gb|BU892155.1|BU892155 P060A10 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 622
Score = 40.1 bits (20), Expect = 0.20
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 333 tgtgggtcctgcttcgagatcaagtgcg 360
|||||||| ||||| |||||||||||||
Sbjct: 300 tgtgggtcttgctttgagatcaagtgcg 327
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 138,655
Number of Sequences: 369679
Number of extensions: 138655
Number of successful extensions: 40697
Number of sequences better than 0.5: 11
Number of HSP's better than 0.5 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40637
Number of HSP's gapped (non-prelim): 60
length of query: 1277
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1258
effective length of database: 196,384,763
effective search space: 247052031854
effective search space used: 247052031854
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)