BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3185308.2.2
         (697 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CB176651.1|CB176651  PopSC00074 Poplar SC cDNA library Po...    42   0.028
gb|AC149486.1|  Populus trichocarpa clone Pop1-8L22, complet...    40   0.11 
gb|AC149575.1|  Populus trichocarpa clone Pop1-41G18, comple...    40   0.11 
gb|CN522610.1|CN522610  GQ0124.B3_B04 GQ012 Populus trichoca...    38   0.43 
gb|CX178979.1|CX178979  C01_45-118_05.ab1 leaf inoculated wi...    38   0.43 
gb|CX181443.1|CX181443  F04_45-10_12.ab1 leaf inoculated wit...    38   0.43 
gb|CX181729.1|CX181729  D08_45-115_08.ab1 leaf inoculated wi...    38   0.43 

>gb|CB176651.1|CB176651 PopSC00074 Poplar SC cDNA library Populus alba x Populus tremula
           var. glandulosa cDNA clone PopSC00074, mRNA sequence
          Length = 473

 Score = 42.1 bits (21), Expect = 0.028
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 134 atgcatatatatacatataaa 154
           |||||||||||||||||||||
Sbjct: 355 atgcatatatatacatataaa 375



>gb|AC149486.1| Populus trichocarpa clone Pop1-8L22, complete sequence
          Length = 66066

 Score = 40.1 bits (20), Expect = 0.11
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 139   tatatatacatataaagaag 158
             ||||||||||||||||||||
Sbjct: 15157 tatatatacatataaagaag 15176



>gb|AC149575.1| Populus trichocarpa clone Pop1-41G18, complete sequence
          Length = 111678

 Score = 40.1 bits (20), Expect = 0.11
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 139   tatatatacatataaagaag 158
             ||||||||||||||||||||
Sbjct: 77770 tatatatacatataaagaag 77789



>gb|CN522610.1|CN522610 GQ0124.B3_B04 GQ012 Populus trichocarpa x Populus deltoides cDNA
           clone GQ0124_B04 5', mRNA sequence
          Length = 648

 Score = 38.2 bits (19), Expect = 0.43
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 140 atatatacatataaagaag 158
           |||||||||||||||||||
Sbjct: 41  atatatacatataaagaag 59



>gb|CX178979.1|CX178979 C01_45-118_05.ab1 leaf inoculated with Marssonia pathogen of
           Populus euramericana Populus x canadensis cDNA, mRNA
           sequence
          Length = 653

 Score = 38.2 bits (19), Expect = 0.43
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 140 atatatacatataaagaag 158
           |||||||||||||||||||
Sbjct: 74  atatatacatataaagaag 92



>gb|CX181443.1|CX181443 F04_45-10_12.ab1 leaf inoculated with Marssonia pathogen of Populus
           euramericana Populus x canadensis cDNA, mRNA sequence
          Length = 625

 Score = 38.2 bits (19), Expect = 0.43
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 140 atatatacatataaagaag 158
           |||||||||||||||||||
Sbjct: 74  atatatacatataaagaag 92



>gb|CX181729.1|CX181729 D08_45-115_08.ab1 leaf inoculated with Marssonia pathogen of
           Populus euramericana Populus x canadensis cDNA, mRNA
           sequence
          Length = 657

 Score = 38.2 bits (19), Expect = 0.43
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 140 atatatacatataaagaag 158
           |||||||||||||||||||
Sbjct: 78  atatatacatataaagaag 96



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 36,656
Number of Sequences: 369679
Number of extensions: 36656
Number of successful extensions: 9334
Number of sequences better than  0.5: 7
Number of HSP's better than  0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9314
Number of HSP's gapped (non-prelim): 20
length of query: 697
length of database: 203,408,664
effective HSP length: 19
effective length of query: 678
effective length of database: 196,384,763
effective search space: 133148869314
effective search space used: 133148869314
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)