BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3173057.2.1
(1264 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DN485525.1|DN485525 N011C02.3pR Populus bark cDNA librar... 50 2e-004
gb|DN495011.1|DN495011 N011C02.5pR Populus bark cDNA librar... 50 2e-004
gb|BU813501.1|BU813501 N011C02 Populus bark cDNA library Po... 46 0.003
gb|CV267312.1|CV267312 WS02031.B21_G12 PTxN-IB-N-A-11 Popul... 46 0.003
gb|CV282972.1|CV282972 WS0186.B21_B13 PTxD-IL-N-A-9 Populus... 46 0.003
gb|CA924700.1|CA924700 MTU7CL.P8.H12 Aspen leaf cDNA Librar... 42 0.051
gb|BU808779.1|BU808779 UL100TH05 Populus leaf cDNA library ... 40 0.20
gb|BU875330.1|BU875330 V005D11 Populus flower cDNA library ... 40 0.20
gb|BU876101.1|BU876101 V016B06 Populus flower cDNA library ... 40 0.20
gb|BU876119.1|BU876119 V016D09 Populus flower cDNA library ... 40 0.20
gb|BU876267.1|BU876267 V018F01 Populus flower cDNA library ... 40 0.20
gb|BU876311.1|BU876311 V019B03 Populus flower cDNA library ... 40 0.20
gb|BU879673.1|BU879673 V063A09 Populus flower cDNA library ... 40 0.20
>gb|DN485525.1|DN485525 N011C02.3pR Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA clone N011C02 3', mRNA sequence
Length = 556
Score = 50.1 bits (25), Expect = 2e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 799 gccaccggcctcaatggcaacgctaactggctggtgagcaaccgccttctgca 851
||||| ||| |||||||| |||||||||||||| ||||| || || |||||||
Sbjct: 495 gccactggcttcaatggcgacgctaactggctgatgagccacagctttctgca 547
>gb|DN495011.1|DN495011 N011C02.5pR Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA clone N011C02 5', mRNA sequence
Length = 603
Score = 50.1 bits (25), Expect = 2e-004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 799 gccaccggcctcaatggcaacgctaactggctggtgagcaaccgccttctgca 851
||||| ||| |||||||| |||||||||||||| ||||| || || |||||||
Sbjct: 61 gccactggcttcaatggcgacgctaactggctgatgagccacagctttctgca 9
>gb|BU813501.1|BU813501 N011C02 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 553
Score = 46.1 bits (23), Expect = 0.003
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 799 gccaccggcctcaatggcaacgctaactggctggtgagc 837
||||| ||| |||||||| |||||||||||||| |||||
Sbjct: 41 gccactggcttcaatggcgacgctaactggctgatgagc 3
>gb|CV267312.1|CV267312 WS02031.B21_G12 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02031_G12 3', mRNA sequence
Length = 899
Score = 46.1 bits (23), Expect = 0.003
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 799 gccaccggcctcaatggcaacgctaactggctggtgagc 837
||||| ||| |||||||| |||||||||||||| |||||
Sbjct: 622 gccactggcttcaatggcgacgctaactggctgatgagc 660
>gb|CV282972.1|CV282972 WS0186.B21_B13 PTxD-IL-N-A-9 Populus trichocarpa x Populus
deltoides cDNA clone WS0186_B13 3', mRNA sequence
Length = 866
Score = 46.1 bits (23), Expect = 0.003
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 799 gccaccggcctcaatggcaacgctaactggctggtgagc 837
||||| ||| |||||||| |||||||||||||| |||||
Sbjct: 849 gccactggcttcaatggcgacgctaactggctgatgagc 811
>gb|CA924700.1|CA924700 MTU7CL.P8.H12 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 577
Score = 42.1 bits (21), Expect = 0.051
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 811 aatggcaacgctaactggctggtgagcaaccgccttctgca 851
|||||| |||||||||||||| ||||| || || |||||||
Sbjct: 524 aatggcgacgctaactggctgatgagccacagctttctgca 564
>gb|BU808779.1|BU808779 UL100TH05 Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 560
Score = 40.1 bits (20), Expect = 0.20
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 392 cagcaggtggcgccctcgaccgggcagcagccccagaccaagca 435
||||||||||| ||||||| |||||||| ||||| || |||||
Sbjct: 524 cagcaggtggcaccctcgagtgggcagcatccccatacaaagca 481
>gb|BU875330.1|BU875330 V005D11 Populus flower cDNA library Populus trichocarpa cDNA 5 prime,
mRNA sequence
Length = 696
Score = 40.1 bits (20), Expect = 0.20
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 1142 gcccagcaacttccgcattgcccctggt 1169
|||||||||||||| ||||| |||||||
Sbjct: 476 gcccagcaacttccacattgaccctggt 449
>gb|BU876101.1|BU876101 V016B06 Populus flower cDNA library Populus trichocarpa cDNA 5 prime,
mRNA sequence
Length = 764
Score = 40.1 bits (20), Expect = 0.20
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 1142 gcccagcaacttccgcattgcccctggt 1169
|||||||||||||| ||||| |||||||
Sbjct: 515 gcccagcaacttccacattgaccctggt 488
>gb|BU876119.1|BU876119 V016D09 Populus flower cDNA library Populus trichocarpa cDNA 5 prime,
mRNA sequence
Length = 757
Score = 40.1 bits (20), Expect = 0.20
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 1142 gcccagcaacttccgcattgcccctggt 1169
|||||||||||||| ||||| |||||||
Sbjct: 508 gcccagcaacttccacattgaccctggt 481
>gb|BU876267.1|BU876267 V018F01 Populus flower cDNA library Populus trichocarpa cDNA 5 prime,
mRNA sequence
Length = 613
Score = 40.1 bits (20), Expect = 0.20
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 1142 gcccagcaacttccgcattgcccctggt 1169
|||||||||||||| ||||| |||||||
Sbjct: 472 gcccagcaacttccacattgaccctggt 445
>gb|BU876311.1|BU876311 V019B03 Populus flower cDNA library Populus trichocarpa cDNA 5 prime,
mRNA sequence
Length = 568
Score = 40.1 bits (20), Expect = 0.20
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 1142 gcccagcaacttccgcattgcccctggt 1169
|||||||||||||| ||||| |||||||
Sbjct: 476 gcccagcaacttccacattgaccctggt 449
>gb|BU879673.1|BU879673 V063A09 Populus flower cDNA library Populus trichocarpa cDNA 5 prime,
mRNA sequence
Length = 520
Score = 40.1 bits (20), Expect = 0.20
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 1142 gcccagcaacttccgcattgcccctggt 1169
|||||||||||||| ||||| |||||||
Sbjct: 271 gcccagcaacttccacattgaccctggt 244
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 94,080
Number of Sequences: 369679
Number of extensions: 94080
Number of successful extensions: 26155
Number of sequences better than 0.5: 13
Number of HSP's better than 0.5 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26139
Number of HSP's gapped (non-prelim): 16
length of query: 1264
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1245
effective length of database: 196,384,763
effective search space: 244499029935
effective search space used: 244499029935
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)