BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115474.2.1
(798 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU887462.1|BU887462 R061D12 Populus root cDNA library Po... 70 1e-010
gb|CK103987.1|CK103987 I008P96.5pR Populus senescing leaves... 70 1e-010
gb|CX183006.1|CX183006 F11_45-25_11.ab1 leaf inoculated wit... 62 3e-008
gb|BU809882.1|BU809882 UL63PC04 Populus leaf cDNA library P... 58 5e-007
gb|BU810146.1|BU810146 UL66H11 Populus leaf cDNA library Po... 58 5e-007
gb|BI122552.1|BI122552 I008P96P Populus leaf cDNA library P... 56 2e-006
gb|CV244028.1|CV244028 WS0253.B21_I11 PT-MB-N-A-15 Populus ... 46 0.002
gb|BU869115.1|BU869115 M126C02 Populus flower cDNA library ... 38 0.50
gb|CV243175.1|CV243175 WS02518.B21_B20 PT-MB-N-A-15 Populus... 38 0.50
gb|CV262481.1|CV262481 WS02019.B21_K22 PTxN-IB-N-A-11 Popul... 38 0.50
gb|CV263402.1|CV263402 WS02021.B21_G12 PTxN-IB-N-A-11 Popul... 38 0.50
gb|CX168405.1|CX168405 G01_69-47_13.ab1 leaf inoculated wit... 38 0.50
gb|DN485313.1|DN485313 M126C02.3pR Populus female catkins c... 38 0.50
gb|DN494776.1|DN494776 M126C02.5pR Populus female catkins c... 38 0.50
gb|DT490033.1|DT490033 WS02543.B21_N17 PT-MB-N-A-15 Populus... 38 0.50
gb|DT492320.1|DT492320 WS02550.C21_F11 PT-MB-N-A-15 Populus... 38 0.50
gb|DT492935.1|DT492935 WS02552.C21_O10 PT-MB-N-A-15 Populus... 38 0.50
>gb|BU887462.1|BU887462 R061D12 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 503
Score = 69.9 bits (35), Expect = 1e-010
Identities = 59/67 (88%)
Strand = Plus / Minus
Query: 199 ttgtggcttcaaatccatccatttcaggcatctgtatgtccatgaaacaagcatcaaaat 258
|||| |||||||| ||||||||||||||||| || || |||||||| || |||||||| |
Sbjct: 308 ttgtagcttcaaacccatccatttcaggcatttggatatccatgaagcatgcatcaaatt 249
Query: 259 tgtgagg 265
|||||||
Sbjct: 248 tgtgagg 242
Score = 50.1 bits (25), Expect = 1e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 15 tcgaatggcttggaaacataaccatccat 43
|||||||||||||||||||| ||||||||
Sbjct: 435 tcgaatggcttggaaacatatccatccat 407
>gb|CK103987.1|CK103987 I008P96.5pR Populus senescing leaves cDNA library Populus tremula
cDNA clone I008P96 5', mRNA sequence
Length = 624
Score = 69.9 bits (35), Expect = 1e-010
Identities = 59/67 (88%)
Strand = Plus / Minus
Query: 199 ttgtggcttcaaatccatccatttcaggcatctgtatgtccatgaaacaagcatcaaaat 258
|||| |||||||| ||||||||||||||||| || || |||||||| || |||||||| |
Sbjct: 112 ttgtagcttcaaacccatccatttcaggcatttggatatccatgaagcatgcatcaaatt 53
Query: 259 tgtgagg 265
|||||||
Sbjct: 52 tgtgagg 46
>gb|CX183006.1|CX183006 F11_45-25_11.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 620
Score = 61.9 bits (31), Expect = 3e-008
Identities = 58/67 (86%)
Strand = Plus / Minus
Query: 199 ttgtggcttcaaatccatccatttcaggcatctgtatgtccatgaaacaagcatcaaaat 258
|||| |||||||| ||||||||||||||| | || || |||||||| || |||||||| |
Sbjct: 361 ttgtagcttcaaacccatccatttcaggcgtttggatatccatgaagcatgcatcaaatt 302
Query: 259 tgtgagg 265
|||||||
Sbjct: 301 tgtgagg 295
Score = 50.1 bits (25), Expect = 1e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 15 tcgaatggcttggaaacataaccatccat 43
|||||||||||||||||||| ||||||||
Sbjct: 488 tcgaatggcttggaaacatatccatccat 460
>gb|BU809882.1|BU809882 UL63PC04 Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 375
Score = 58.0 bits (29), Expect = 5e-007
Identities = 65/77 (84%)
Strand = Plus / Minus
Query: 18 aatggcttggaaacataaccatccatttcagatttcaagcattgttcatgtgtcgcctgg 77
||||||||||||||||| ||||||||| || || | |||||| |||| ||| ||||||
Sbjct: 161 aatggcttggaaacatacccatccattccacatctttggcattgctcatatgtagcctgg 102
Query: 78 ataacatctgctgtcat 94
|| |||||||| |||||
Sbjct: 101 atcacatctgcagtcat 85
>gb|BU810146.1|BU810146 UL66H11 Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 415
Score = 58.0 bits (29), Expect = 5e-007
Identities = 65/77 (84%)
Strand = Plus / Minus
Query: 18 aatggcttggaaacataaccatccatttcagatttcaagcattgttcatgtgtcgcctgg 77
||||||||||||||||| ||||||||| || || | |||||| |||| ||| ||||||
Sbjct: 164 aatggcttggaaacatacccatccattccacatctttggcattgctcatatgtagcctgg 105
Query: 78 ataacatctgctgtcat 94
|| |||||||| |||||
Sbjct: 104 atcacatctgcagtcat 88
>gb|BI122552.1|BI122552 I008P96P Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 456
Score = 56.0 bits (28), Expect = 2e-006
Identities = 59/68 (86%), Gaps = 1/68 (1%)
Strand = Plus / Minus
Query: 199 ttgtggcttcaaatccatccatttcaggcatctgtatgt-ccatgaaacaagcatcaaaa 257
|||| |||||||| ||||||||||||||||| || || | ||||||| || ||||||||
Sbjct: 80 ttgtagcttcaaacccatccatttcaggcatttggatatgccatgaagcatgcatcaaat 21
Query: 258 ttgtgagg 265
||||||||
Sbjct: 20 ttgtgagg 13
Score = 50.1 bits (25), Expect = 1e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 15 tcgaatggcttggaaacataaccatccat 43
|||||||||||||||||||| ||||||||
Sbjct: 207 tcgaatggcttggaaacatatccatccat 179
>gb|CV244028.1|CV244028 WS0253.B21_I11 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0253_I11 3', mRNA sequence
Length = 840
Score = 46.1 bits (23), Expect = 0.002
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 18 aatggcttggaaacataaccatccatt 44
||||||||||||||||| |||||||||
Sbjct: 714 aatggcttggaaacatacccatccatt 740
>gb|BU869115.1|BU869115 M126C02 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 568
Score = 38.2 bits (19), Expect = 0.50
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 656 attctttcagccaggtttc 674
|||||||||||||||||||
Sbjct: 201 attctttcagccaggtttc 219
>gb|CV243175.1|CV243175 WS02518.B21_B20 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02518_B20 3', mRNA sequence
Length = 539
Score = 38.2 bits (19), Expect = 0.50
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 656 attctttcagccaggtttc 674
|||||||||||||||||||
Sbjct: 377 attctttcagccaggtttc 359
>gb|CV262481.1|CV262481 WS02019.B21_K22 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02019_K22 3', mRNA sequence
Length = 780
Score = 38.2 bits (19), Expect = 0.50
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 206 ttcaaatccatccatttcaggcatctg 232
|||||||||||||| |||||||||||
Sbjct: 353 ttcaaatccatccaactcaggcatctg 327
>gb|CV263402.1|CV263402 WS02021.B21_G12 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02021_G12 3', mRNA sequence
Length = 556
Score = 38.2 bits (19), Expect = 0.50
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 563 agaacttttagggttctccaaaa 585
|||||||||| ||||||||||||
Sbjct: 37 agaacttttatggttctccaaaa 15
>gb|CX168405.1|CX168405 G01_69-47_13.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 637
Score = 38.2 bits (19), Expect = 0.50
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 206 ttcaaatccatccatttcaggcatctg 232
|||||||||||||| |||||||||||
Sbjct: 492 ttcaaatccatccaactcaggcatctg 466
>gb|DN485313.1|DN485313 M126C02.3pR Populus female catkins cDNA library Populus trichocarpa
cDNA clone M126C02 3', mRNA sequence
Length = 555
Score = 38.2 bits (19), Expect = 0.50
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 656 attctttcagccaggtttc 674
|||||||||||||||||||
Sbjct: 356 attctttcagccaggtttc 338
>gb|DN494776.1|DN494776 M126C02.5pR Populus female catkins cDNA library Populus trichocarpa
cDNA clone M126C02 5', mRNA sequence
Length = 579
Score = 38.2 bits (19), Expect = 0.50
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 656 attctttcagccaggtttc 674
|||||||||||||||||||
Sbjct: 200 attctttcagccaggtttc 218
>gb|DT490033.1|DT490033 WS02543.B21_N17 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02543_N17 3', mRNA sequence
Length = 454
Score = 38.2 bits (19), Expect = 0.50
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 206 ttcaaatccatccatttcaggcatctg 232
|||||||||||||| |||||||||||
Sbjct: 398 ttcaaatccatccaactcaggcatctg 424
>gb|DT492320.1|DT492320 WS02550.C21_F11 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02550_F11 3', mRNA sequence
Length = 725
Score = 38.2 bits (19), Expect = 0.50
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 206 ttcaaatccatccatttcaggcatctg 232
|||||||||||||| |||||||||||
Sbjct: 455 ttcaaatccatccaactcaggcatctg 481
>gb|DT492935.1|DT492935 WS02552.C21_O10 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02552_O10 3', mRNA sequence
Length = 584
Score = 38.2 bits (19), Expect = 0.50
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 656 attctttcagccaggtttc 674
|||||||||||||||||||
Sbjct: 404 attctttcagccaggtttc 386
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 106,651
Number of Sequences: 369679
Number of extensions: 106651
Number of successful extensions: 29674
Number of sequences better than 0.5: 17
Number of HSP's better than 0.5 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29648
Number of HSP's gapped (non-prelim): 26
length of query: 798
length of database: 203,408,664
effective HSP length: 19
effective length of query: 779
effective length of database: 196,384,763
effective search space: 152983730377
effective search space used: 152983730377
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)