BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3106166.2.1
(715 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV275703.1|CV275703 WS0177.B21_F13 PTxD-NR-A-8 Populus t... 92 3e-017
gb|CV281784.1|CV281784 WS0182.B21_N17 PTxD-IL-N-A-9 Populus... 92 3e-017
gb|DT518216.1|DT518216 WS02436.B21_I12 PTxD-ICC-N-A-14 Popu... 92 3e-017
gb|DN492675.1|DN492675 X031B04.3pR Populus wood cDNA librar... 88 5e-016
gb|DN502685.1|DN502685 X031B04.5pR Populus wood cDNA librar... 88 5e-016
gb|CK094730.1|CK094730 I052P17.3pR Populus senescing leaves... 86 2e-015
gb|CV244411.1|CV244411 WS0254.B21_J10 PT-MB-N-A-15 Populus ... 64 8e-009
gb|CK094520.1|CK094520 I036P47.3pR Populus senescing leaves... 54 8e-006
gb|AF008183.1|AF008183 Populus x generosa strain H11 4-coum... 46 0.002
gb|CK104483.1|CK104483 I036P47.5pR Populus senescing leaves... 42 0.029
gb|CX655925.1|CX655925 PO02043A08 Poplar SC cDNA library Po... 42 0.029
gb|CX655984.1|CX655984 PO02044A11 Poplar SC cDNA library Po... 42 0.029
gb|CX657399.1|CX657399 PO02044H10 Poplar SC cDNA library Po... 42 0.029
gb|AI166854.1|AI166854 xylem.est.645 Poplar xylem Lambda ZA... 40 0.11
gb|BI136919.1|BI136919 F076P70Y Populus flower cDNA library... 40 0.11
gb|CX656139.1|CX656139 PO02047E06 Poplar SC cDNA library Po... 40 0.11
gb|BI124251.1|BI124251 I039P73P Populus leaf cDNA library P... 38 0.45
gb|BU884257.1|BU884257 R008C08 Populus root cDNA library Po... 38 0.45
gb|CK104532.1|CK104532 I039P73.5pR Populus senescing leaves... 38 0.45
gb|CX654535.1|CX654535 PO02012F09 Poplar SC cDNA library Po... 38 0.45
gb|CX657382.1|CX657382 PO02044B05 Poplar SC cDNA library Po... 38 0.45
>gb|CV275703.1|CV275703 WS0177.B21_F13 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS0177_F13 3', mRNA sequence
Length = 875
Score = 91.7 bits (46), Expect = 3e-017
Identities = 148/182 (81%)
Strand = Plus / Plus
Query: 491 tcaccagcttcagcatcggggaacgggataacaacagcatccagaatttctggatgagac 550
||||||||||||||||| || | ||||| ||||||||||||| ||||| ||||||||
Sbjct: 386 tcaccagcttcagcatcaggatatgggatgacaacagcatccaaaatttgaggatgagaa 445
Query: 551 agaagtagcccttcaagctcggcaggtgcaatctgaaaacctttgtacttaatcagttct 610
| || |||||||| || || |||||||||| |||||||||||| ||||| || || |||
Sbjct: 446 actagcagcccttccagttctgcaggtgcaacctgaaaacctttatacttgatgagctct 505
Query: 611 ttaagtctatcaactacgaaaagctgacctccctcatcaaagtatccaatatcaccagta 670
|||| | ||| || || ||||| || || | |||||||| ||||||| ||| ||||||
Sbjct: 506 ttaatccgatcgaccacaaaaagttgtccatcatcatcaaaatatccaagatctccagta 565
Query: 671 tg 672
||
Sbjct: 566 tg 567
Score = 44.1 bits (22), Expect = 0.007
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 420 caataaatttctggacatcaacttcagtca 449
||||||||||||| ||||| ||||||||||
Sbjct: 315 caataaatttctgaacatctacttcagtca 344
>gb|CV281784.1|CV281784 WS0182.B21_N17 PTxD-IL-N-A-9 Populus trichocarpa x Populus
deltoides cDNA clone WS0182_N17 3', mRNA sequence
Length = 859
Score = 91.7 bits (46), Expect = 3e-017
Identities = 148/182 (81%)
Strand = Plus / Plus
Query: 491 tcaccagcttcagcatcggggaacgggataacaacagcatccagaatttctggatgagac 550
||||||||||||||||| || | ||||| ||||||||||||| ||||| ||||||||
Sbjct: 401 tcaccagcttcagcatcaggatatgggatgacaacagcatccaaaatttgaggatgagaa 460
Query: 551 agaagtagcccttcaagctcggcaggtgcaatctgaaaacctttgtacttaatcagttct 610
| || |||||||| || || |||||||||| |||||||||||| ||||| || || |||
Sbjct: 461 actagcagcccttccagttctgcaggtgcaacctgaaaacctttatacttgatgagctct 520
Query: 611 ttaagtctatcaactacgaaaagctgacctccctcatcaaagtatccaatatcaccagta 670
|||| | ||| || || ||||| || || | |||||||| ||||||| ||| ||||||
Sbjct: 521 ttaatccgatcgaccacaaaaagttgtccatcatcatcaaaatatccaagatctccagta 580
Query: 671 tg 672
||
Sbjct: 581 tg 582
Score = 44.1 bits (22), Expect = 0.007
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 420 caataaatttctggacatcaacttcagtca 449
||||||||||||| ||||| ||||||||||
Sbjct: 330 caataaatttctgaacatctacttcagtca 359
>gb|DT518216.1|DT518216 WS02436.B21_I12 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02436_I12 3', mRNA sequence
Length = 888
Score = 91.7 bits (46), Expect = 3e-017
Identities = 148/182 (81%)
Strand = Plus / Plus
Query: 491 tcaccagcttcagcatcggggaacgggataacaacagcatccagaatttctggatgagac 550
||||||||||||||||| || | ||||| ||||||||||||| ||||| ||||||||
Sbjct: 386 tcaccagcttcagcatcaggatatgggatgacaacagcatccaaaatttgaggatgagaa 445
Query: 551 agaagtagcccttcaagctcggcaggtgcaatctgaaaacctttgtacttaatcagttct 610
| || |||||||| || || |||||||||| |||||||||||| ||||| || || |||
Sbjct: 446 actagcagcccttccagttctgcaggtgcaacctgaaaacctttatacttgatgagctct 505
Query: 611 ttaagtctatcaactacgaaaagctgacctccctcatcaaagtatccaatatcaccagta 670
|||| | ||| || || ||||| || || | |||||||| ||||||| ||| ||||||
Sbjct: 506 ttaatccgatcgaccacaaaaagttgtccatcatcatcaaaatatccaacatctccagta 565
Query: 671 tg 672
||
Sbjct: 566 tg 567
Score = 44.1 bits (22), Expect = 0.007
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 420 caataaatttctggacatcaacttcagtca 449
||||||||||||| ||||| ||||||||||
Sbjct: 315 caataaatttctgaacatctacttcagtca 344
>gb|DN492675.1|DN492675 X031B04.3pR Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA clone X031B04 3', mRNA sequence
Length = 733
Score = 87.7 bits (44), Expect = 5e-016
Identities = 104/124 (83%)
Strand = Plus / Plus
Query: 491 tcaccagcttcagcatcggggaacgggataacaacagcatccagaatttctggatgagac 550
||||||||||||||||| || | ||||| ||||||||||||| ||||| ||||||||
Sbjct: 375 tcaccagcttcagcatcaggatatgggatgacaacagcatccaaaatttgaggatgagaa 434
Query: 551 agaagtagcccttcaagctcggcaggtgcaatctgaaaacctttgtacttaatcagttct 610
| || |||||||| || || |||||||||| |||||||||||| ||||| || || |||
Sbjct: 435 actagcagcccttccagttctgcaggtgcaacctgaaaacctttatacttgatgagctct 494
Query: 611 ttaa 614
||||
Sbjct: 495 ttaa 498
>gb|DN502685.1|DN502685 X031B04.5pR Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA clone X031B04 5', mRNA sequence
Length = 718
Score = 87.7 bits (44), Expect = 5e-016
Identities = 104/124 (83%)
Strand = Plus / Minus
Query: 491 tcaccagcttcagcatcggggaacgggataacaacagcatccagaatttctggatgagac 550
||||||||||||||||| || | ||||| ||||||||||||| ||||| ||||||||
Sbjct: 359 tcaccagcttcagcatcaggatatgggatgacaacagcatccaaaatttgaggatgagaa 300
Query: 551 agaagtagcccttcaagctcggcaggtgcaatctgaaaacctttgtacttaatcagttct 610
| || |||||||| || || |||||||||| |||||||||||| ||||| || || |||
Sbjct: 299 actagcagcccttccagttctgcaggtgcaacctgaaaacctttatacttgatgagctct 240
Query: 611 ttaa 614
||||
Sbjct: 239 ttaa 236
>gb|CK094730.1|CK094730 I052P17.3pR Populus senescing leaves cDNA library Populus tremula
cDNA clone I052P17 3', mRNA sequence
Length = 480
Score = 85.7 bits (43), Expect = 2e-015
Identities = 103/123 (83%)
Strand = Plus / Plus
Query: 491 tcaccagcttcagcatcggggaacgggataacaacagcatccagaatttctggatgagac 550
||||||||||||||||| || | ||||| ||||||||||||| ||||| ||||||||
Sbjct: 358 tcaccagcttcagcatcaggatatgggatgacaacagcatccaaaatttgaggatgagaa 417
Query: 551 agaagtagcccttcaagctcggcaggtgcaatctgaaaacctttgtacttaatcagttct 610
| || |||||||| || || |||||||||| |||||||||||| ||||| || || |||
Sbjct: 418 actagcagcccttccagttctgcaggtgcaacctgaaaacctttatacttgatgagctct 477
Query: 611 tta 613
|||
Sbjct: 478 tta 480
>gb|CV244411.1|CV244411 WS0254.B21_J10 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0254_J10 3', mRNA sequence
Length = 886
Score = 63.9 bits (32), Expect = 8e-009
Identities = 119/148 (80%)
Strand = Plus / Plus
Query: 525 cagcatccagaatttctggatgagacagaagtagcccttcaagctcggcaggtgcaatct 584
||||||||| ||||| |||||||| | || |||||||| || || |||||||||| ||
Sbjct: 28 cagcatccaaaatttgaggatgagaaactagcagcccttccagttctgcaggtgcaacct 87
Query: 585 gaaaacctttgtacttaatcagttctttaagtctatcaactacgaaaagctgacctccct 644
|||||||||| ||||| || || ||||||| | ||| || || ||||| || || | |
Sbjct: 88 gaaaacctttatacttgatgagctctttaatccgatcgaccacaaaaagttgtccatcat 147
Query: 645 catcaaagtatccaatatcaccagtatg 672
||||||| ||||||| ||| ||||||||
Sbjct: 148 catcaaaatatccaacatctccagtatg 175
>gb|CK094520.1|CK094520 I036P47.3pR Populus senescing leaves cDNA library Populus tremula
cDNA clone I036P47 3', mRNA sequence
Length = 128
Score = 54.0 bits (27), Expect = 8e-006
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 491 tcaccagcttcagcatcggggaacgggataacaacagcatccagaatttctggatgaga 549
||||||||||||||||| || | ||||| ||||||||||||| ||||| ||||||||
Sbjct: 66 tcaccagcttcagcatcaggatatgggatgacaacagcatccaaaatttgaggatgaga 124
>gb|AF008183.1|AF008183 Populus x generosa strain H11 4-coumarate:CoA ligase 2 (4CL2) mRNA,
complete cds
Length = 1922
Score = 46.1 bits (23), Expect = 0.002
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 644 tcatcaaagtatccaatatcaccagtatgcaacca 678
||||||| ||||||||||||||| || ||||||||
Sbjct: 1305 tcatcaatgtatccaatatcacccgtgtgcaacca 1271
Score = 40.1 bits (20), Expect = 0.11
Identities = 44/52 (84%)
Strand = Plus / Minus
Query: 561 cttcaagctcggcaggtgcaatctgaaaacctttgtacttaatcagttcttt 612
|||||||||| |||||||| | || ||||||||||| || |||| ||||||
Sbjct: 1385 cttcaagctcagcaggtgctacttggaaacctttgtatttgatcaattcttt 1334
>gb|CK104483.1|CK104483 I036P47.5pR Populus senescing leaves cDNA library Populus tremula
cDNA clone I036P47 5', mRNA sequence
Length = 449
Score = 42.1 bits (21), Expect = 0.029
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 494 ccagcttcagcatcggggaacgggataacaacagcatccagaatt 538
|||||||||||||| || | ||||| ||||||||||||| ||||
Sbjct: 51 ccagcttcagcatcaggatatgggatgacaacagcatccaaaatt 7
>gb|CX655925.1|CX655925 PO02043A08 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02043A08 5', mRNA sequence
Length = 672
Score = 42.1 bits (21), Expect = 0.029
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 691 ctcgtgccgaattcctgcagcccgg 715
|||||||||||| ||||||||||||
Sbjct: 26 ctcgtgccgaatgcctgcagcccgg 2
>gb|CX655984.1|CX655984 PO02044A11 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02044A11 5', mRNA sequence
Length = 588
Score = 42.1 bits (21), Expect = 0.029
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 691 ctcgtgccgaattcctgcagcccgg 715
|||||||||||| ||||||||||||
Sbjct: 32 ctcgtgccgaatgcctgcagcccgg 8
>gb|CX657399.1|CX657399 PO02044H10 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02044H10 5', mRNA sequence
Length = 627
Score = 42.1 bits (21), Expect = 0.029
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 691 ctcgtgccgaattcctgcagcccgg 715
|||||||||||| ||||||||||||
Sbjct: 31 ctcgtgccgaatgcctgcagcccgg 7
>gb|AI166854.1|AI166854 xylem.est.645 Poplar xylem Lambda ZAPII library Populus trichocarpa
cDNA 5', mRNA sequence
Length = 160
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 691 ctcgtgccgaattcctgcag 710
||||||||||||||||||||
Sbjct: 20 ctcgtgccgaattcctgcag 1
>gb|BI136919.1|BI136919 F076P70Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 536
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 691 ctcgtgccgaattcctgcag 710
||||||||||||||||||||
Sbjct: 20 ctcgtgccgaattcctgcag 1
>gb|CX656139.1|CX656139 PO02047E06 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02047E06 5', mRNA sequence
Length = 422
Score = 40.1 bits (20), Expect = 0.11
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 691 ctcgtgccgaattcctgcagcccg 714
||||||||| ||||||||||||||
Sbjct: 24 ctcgtgccggattcctgcagcccg 1
>gb|BI124251.1|BI124251 I039P73P Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 151
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 27 caatatttcttcgtacaac 45
|||||||||||||||||||
Sbjct: 66 caatatttcttcgtacaac 48
>gb|BU884257.1|BU884257 R008C08 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 349
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 647 tcaaagtatccaatatcac 665
|||||||||||||||||||
Sbjct: 307 tcaaagtatccaatatcac 289
>gb|CK104532.1|CK104532 I039P73.5pR Populus senescing leaves cDNA library Populus tremula
cDNA clone I039P73 5', mRNA sequence
Length = 305
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 27 caatatttcttcgtacaac 45
|||||||||||||||||||
Sbjct: 80 caatatttcttcgtacaac 62
>gb|CX654535.1|CX654535 PO02012F09 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02012F09 5', mRNA sequence
Length = 652
Score = 38.2 bits (19), Expect = 0.45
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 693 cgtgccgaattcctgcagcccgg 715
|||||||||| ||||||||||||
Sbjct: 26 cgtgccgaatgcctgcagcccgg 4
>gb|CX657382.1|CX657382 PO02044B05 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02044B05 5', mRNA sequence
Length = 426
Score = 38.2 bits (19), Expect = 0.45
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 693 cgtgccgaattcctgcagcccgg 715
|||||||||| ||||||||||||
Sbjct: 28 cgtgccgaatgcctgcagcccgg 6
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 89,543
Number of Sequences: 369679
Number of extensions: 89543
Number of successful extensions: 32055
Number of sequences better than 0.5: 21
Number of HSP's better than 0.5 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 32022
Number of HSP's gapped (non-prelim): 33
length of query: 715
length of database: 203,408,664
effective HSP length: 19
effective length of query: 696
effective length of database: 196,384,763
effective search space: 136683795048
effective search space used: 136683795048
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)