BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3106156.2.1
(1016 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AJ774571.1|AJ774571 AJ774571 Populus euphratica shoot 3-... 109 2e-022
gb|BU819793.1|BU819793 UA47BPF05 Populus tremula cambium cD... 90 2e-016
gb|CX655000.1|CX655000 PO01003F05 Poplar SC cDNA library Po... 90 2e-016
gb|BI129503.1|BI129503 G091P61Y Populus cambium cDNA librar... 88 8e-016
gb|CK092088.1|CK092088 G065P17.3pR Populus tension wood cDN... 88 8e-016
gb|DT482700.1|DT482700 WS02520.B21_I18 PT-MB-N-A-15 Populus... 88 8e-016
gb|DT489454.1|DT489454 WS02542.B21_E12 PT-MB-N-A-15 Populus... 88 8e-016
gb|CK110281.1|CK110281 N055B12 Populus bark cDNA library Po... 86 3e-015
gb|CK103411.1|CK103411 G115P63.5pR Populus tension wood cDN... 84 1e-014
gb|CB240549.1|CB240549 PopSC00580 Poplar SC cDNA library Po... 80 2e-013
gb|DT517331.1|DT517331 WS02434.B21_A05 PTxD-ICC-N-A-14 Popu... 76 3e-012
gb|BI138525.1|BI138525 F108P50Y Populus flower cDNA library... 72 5e-011
gb|CA934844.1|CA934844 MTU5TS.P24.F11 Aspen stem cDNA Libra... 72 5e-011
gb|AC149295.1| Populus trichocarpa clone Pop1-008L01, compl... 72 5e-011
gb|AC149424.1| Populus trichocarpa clone Pop1-011N15, compl... 72 5e-011
gb|AC149425.1| Populus trichocarpa clone Pop1-041F22, compl... 72 5e-011
gb|AC149426.1| Populus trichocarpa clone Pop1-053A03, compl... 72 5e-011
gb|BI131118.1|BI131118 G115P63Y Populus cambium cDNA librar... 70 2e-010
gb|BU809199.1|BU809199 UL54PH12 Populus leaf cDNA library P... 66 3e-009
gb|BU814412.1|BU814412 N029C01 Populus bark cDNA library Po... 58 7e-007
>gb|AJ774571.1|AJ774571 AJ774571 Populus euphratica shoot 3-6 months Populus euphratica
cDNA clone P0000300021H08F1, mRNA sequence
Length = 667
Score = 109 bits (55), Expect = 2e-022
Identities = 256/323 (79%)
Strand = Plus / Minus
Query: 451 ccagttgccttcttgcaggcatcaacaaactcattaactgagcgacctcttcctgttcca 510
||||||||||| || || || | ||||||||| || ||||| | ||| |||| || |||
Sbjct: 397 ccagttgcctttttacatgccttaacaaactccttgactgatctaccctttccagtgcca 338
Query: 511 acattgtaaatgccgacttttctaggctctgccttgttgagtgctttcacatgagcatca 570
|||||||| || || ||||| | |||| |||||| | |||||||||||||||||||||
Sbjct: 337 acattgtagattccaactttaccaggcgttgccttttcaagtgctttcacatgagcatca 278
Query: 571 actaaatctgtgacatcaatataatctcttatgcaggttccatcagctgtgggataatct 630
|| | ||| || |||||||||||||||||||| || ||||||||| || ||| |||
Sbjct: 277 acaagatcagtaacatcaatataatctcttatacaagttccatcatgcgtcttatagtct 218
Query: 631 gttcctttaacctttaatcctggaatgactcctaatgctgcatcaaagcaagccccagat 690
|||||||||||||| | || ||||| | || |||||||| || ||||| || ||
Sbjct: 217 gttcctttaaccttcagcccaggaataataccacgagctgcatcgaaacaagcaccggaa 158
Query: 691 atccgaccatgctctcgaagttctggcctaggagcctcacctaatcttccctcagggtca 750
|| || ||||| || || ||||| || ||||||||||||||||| || || || || ||
Sbjct: 157 attcgtccatgttcacgcagttcaggtctaggagcctcacctaacctgccatctggatct 98
Query: 751 gatccaataacattgaaatatct 773
|||||||| |||||||| |||||
Sbjct: 97 gatccaatcacattgaagtatct 75
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 850 atgatatcctctgccattttcttagcttttc 880
|||||||| |||||||| |||||||||||||
Sbjct: 31 atgatatcttctgccatcttcttagcttttc 1
Score = 40.1 bits (20), Expect = 0.16
Identities = 47/56 (83%)
Strand = Plus / Minus
Query: 352 gctgtccagttgagctccttgtttatctttgttgggtcgctgtatacttctgcata 407
||||||||||| ||||| | || || |||| |||||| ||||||||||| |||||
Sbjct: 496 gctgtccagttcagctcatggtaaatttttgatgggtcactgtatacttcagcata 441
>gb|BU819793.1|BU819793 UA47BPF05 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 609
Score = 89.7 bits (45), Expect = 2e-016
Identities = 246/313 (78%)
Strand = Plus / Minus
Query: 454 gttgccttcttgcaggcatcaacaaactcattaactgagcgacctcttcctgttccaaca 513
|||||||| || || |||| |||||||| || ||||| | ||| |||| || ||||||
Sbjct: 339 gttgcctttttacatgcatgtacaaactccttgactgatctacccattccagtgccaaca 280
Query: 514 ttgtaaatgccgacttttctaggctctgccttgttgagtgctttcacatgagcatcaact 573
||||| || || ||||| | |||| |||||| | |||||||| ||||||||||||||
Sbjct: 279 ttgtagattccaactttcccaggcattgccttttcaagtgctttaacatgagcatcaaca 220
Query: 574 aaatctgtgacatcaatataatctcttatgcaggttccatcagctgtgggataatctgtt 633
| ||| || || || |||||||||||||| || |||||||| ||| ||| || |||
Sbjct: 219 agatcagtaacgtcgatataatctcttatacaagttccatcgtgtgtcttatagtccgtt 160
Query: 634 cctttaacctttaatcctggaatgactcctaatgctgcatcaaagcaagccccagatatc 693
||||||||||||| ||| | || | || || |||||||| ||||| ||||| ||
Sbjct: 159 cctttaacctttagtccagcaacaataccacgagcagcatcaaaacaagcaccagaaatt 100
Query: 694 cgaccatgctctcgaagttctggcctaggagcctcacctaatcttccctcagggtcagat 753
|| |||||||| || ||||| || ||||||||||||||||| ||||| || || || |||
Sbjct: 99 cgtccatgctcacgcagttcaggtctaggagcctcacctaaccttccatctggatctgat 40
Query: 754 ccaataacattga 766
||||| |||||||
Sbjct: 39 ccaatcacattga 27
>gb|CX655000.1|CX655000 PO01003F05 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01003F05 5', mRNA sequence
Length = 649
Score = 89.7 bits (45), Expect = 2e-016
Identities = 135/165 (81%)
Strand = Plus / Minus
Query: 451 ccagttgccttcttgcaggcatcaacaaactcattaactgagcgacctcttcctgttcca 510
||||||||||| || || || | ||||||||| || ||||| | ||| |||| || |||
Sbjct: 167 ccagttgcctttttacatgccttaacaaactccttgactgatctaccctttccagtgcca 108
Query: 511 acattgtaaatgccgacttttctaggctctgccttgttgagtgctttcacatgagcatca 570
|||||||| || || ||||| | |||| |||||| | |||||||| ||||||||||||
Sbjct: 107 acattgtagattccaactttaccaggcattgccttttgaagtgctttaacatgagcatca 48
Query: 571 actaaatctgtgacatcaatataatctcttatgcaggttccatca 615
|| | ||| || |||||||||||||||||||| || |||||||||
Sbjct: 47 acaagatcagtaacatcaatataatctcttatacaagttccatca 3
>gb|BI129503.1|BI129503 G091P61Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 466
Score = 87.7 bits (44), Expect = 8e-016
Identities = 179/224 (79%)
Strand = Plus / Minus
Query: 550 agtgctttcacatgagcatcaactaaatctgtgacatcaatataatctcttatgcaggtt 609
|||||||| |||||||||||||| | ||| || |||||||||||||||||||| || |||
Sbjct: 453 agtgctttaacatgagcatcaacaagatcagtaacatcaatataatctcttatacaagtt 394
Query: 610 ccatcagctgtgggataatctgttcctttaacctttaatcctggaatgactcctaatgct 669
||||| || ||| ||||||||||||||||| | || ||||| | || |||
Sbjct: 393 ccatcgtgcgtcttatagtctgttcctttaaccttcagcccaggaataataccacgagct 334
Query: 670 gcatcaaagcaagccccagatatccgaccatgctctcgaagttctggcctaggagcctca 729
||||| || ||||| || || || || |||||||| || ||||| || ||||||||||||
Sbjct: 333 gcatcgaaacaagcaccggaaattcgtccatgctcacgcagttcaggtctaggagcctca 274
Query: 730 cctaatcttccctcagggtcagatccaataacattgaaatatct 773
||||| || || || || || |||||||| |||||||| |||||
Sbjct: 273 cctaacctgccttctggatctgatccaatcacattgaagtatct 230
Score = 65.9 bits (33), Expect = 3e-009
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 850 atgatatcctctgccattttcttagcttttccatatggatt 890
|||||||| |||||||| |||||||||||||||||||||||
Sbjct: 186 atgatatcttctgccatcttcttagcttttccatatggatt 146
>gb|CK092088.1|CK092088 G065P17.3pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G065P17 3', mRNA sequence
Length = 834
Score = 87.7 bits (44), Expect = 8e-016
Identities = 134/164 (81%)
Strand = Plus / Plus
Query: 451 ccagttgccttcttgcaggcatcaacaaactcattaactgagcgacctcttcctgttcca 510
||||||||||| || || || | ||||||||| || ||||| | ||| |||| || |||
Sbjct: 482 ccagttgcctttttacatgccttaacaaactccttgactgatctaccctttccagtgcca 541
Query: 511 acattgtaaatgccgacttttctaggctctgccttgttgagtgctttcacatgagcatca 570
|||||||| || || ||||| | |||| |||||| | |||||||| ||||||||||||
Sbjct: 542 acattgtagattccaactttaccaggcattgccttttgaagtgctttaacatgagcatca 601
Query: 571 actaaatctgtgacatcaatataatctcttatgcaggttccatc 614
|| | ||| || |||||||||||||||||||| || ||||||||
Sbjct: 602 acaagatcagtaacatcaatataatctcttatacaagttccatc 645
>gb|DT482700.1|DT482700 WS02520.B21_I18 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02520_I18 3', mRNA sequence
Length = 753
Score = 87.7 bits (44), Expect = 8e-016
Identities = 170/212 (80%)
Strand = Plus / Plus
Query: 433 tcaattttgatgttgaccccagttgccttcttgcaggcatcaacaaactcattaactgag 492
||||||||||| | |||||||||||||| || | || | ||||||||| || |||||
Sbjct: 542 tcaattttgatatctaccccagttgcctttttacttgccttaacaaactccttgactgat 601
Query: 493 cgacctcttcctgttccaacattgtaaatgccgacttttctaggctctgccttgttgagt 552
| ||| |||| | |||||||||||||| || ||||| | ||||| |||||| | |||
Sbjct: 602 ctaccctttccagggccaacattgtaaattcctactttaccaggctttgccttttcaagt 661
Query: 553 gctttcacatgagcatcaactaaatctgtgacatcaatataatctcttatgcaggttcca 612
||||| |||||||||||||| | ||| | || ||||||||||||||||| || ||||||
Sbjct: 662 gctttaacatgagcatcaacaagatcagaaacgtcaatataatctcttatacaagttcca 721
Query: 613 tcagctgtgggataatctgttcctttaacctt 644
||| || ||| |||||||||||||||||
Sbjct: 722 tcatgcgtcttatagtctgttcctttaacctt 753
>gb|DT489454.1|DT489454 WS02542.B21_E12 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02542_E12 3', mRNA sequence
Length = 934
Score = 87.7 bits (44), Expect = 8e-016
Identities = 251/320 (78%)
Strand = Plus / Plus
Query: 454 gttgccttcttgcaggcatcaacaaactcattaactgagcgacctcttcctgttccaaca 513
|||||||| || || |||| |||||||| || ||||| | ||| |||| || ||||||
Sbjct: 433 gttgcctttttacatgcatgtacaaactcgttgactgatctacccattccagtgccaaca 492
Query: 514 ttgtaaatgccgacttttctaggctctgccttgttgagtgctttcacatgagcatcaact 573
||||| || || ||||| | |||| |||||| | |||||||| ||||||||||| ||
Sbjct: 493 ttgtagattccaactttcccaggcattgccttttcaagtgctttaacatgagcatcgaca 552
Query: 574 aaatctgtgacatcaatataatctcttatgcaggttccatcagctgtgggataatctgtt 633
| ||| || ||||| |||||||||||||| || |||||||| ||| ||| || |||
Sbjct: 553 agatcagtaacatcgatataatctcttatacaagttccatcgtgtgtcttatagtccgtt 612
Query: 634 cctttaacctttaatcctggaatgactcctaatgctgcatcaaagcaagccccagatatc 693
||||||||||||| ||| | || | || || |||||||| ||||| ||||| ||
Sbjct: 613 cctttaacctttagtccagcaacaataccacgagcagcatcaaaacaagcaccagaaatt 672
Query: 694 cgaccatgctctcgaagttctggcctaggagcctcacctaatcttccctcagggtcagat 753
|| || ||||| || ||||| || ||||||||||||||||| ||||| || || || |||
Sbjct: 673 cgtccgtgctcacgcagttcaggtctaggagcctcacctaaccttccatctggatctgat 732
Query: 754 ccaataacattgaaatatct 773
||||| |||||||| |||||
Sbjct: 733 ccaatcacattgaagtatct 752
Score = 71.9 bits (36), Expect = 5e-011
Identities = 69/80 (86%)
Strand = Plus / Plus
Query: 850 atgatatcctctgccattttcttagcttttccatatggattgatagggaactaaggtgtg 909
|||||||| |||||||| ||||||||||||||||||||||| || || | || || |||
Sbjct: 796 atgatatcttctgccatcttcttagcttttccatatggattaatgggtacctgtggagtg 855
Query: 910 gcttctgtaataggcatctt 929
|||| ||||||||||||||
Sbjct: 856 tcttcagtaataggcatctt 875
>gb|CK110281.1|CK110281 N055B12 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA clone N055B12 5', mRNA sequence
Length = 885
Score = 85.7 bits (43), Expect = 3e-015
Identities = 235/299 (78%)
Strand = Plus / Minus
Query: 475 acaaactcattaactgagcgacctcttcctgttccaacattgtaaatgccgacttttcta 534
|||||||| || ||||| | ||| |||| || ||||||||||| || || ||||| | |
Sbjct: 493 acaaactccttgactgatctacccattccagtgccaacattgtagattccaactttccca 434
Query: 535 ggctctgccttgttgagtgctttcacatgagcatcaactaaatctgtgacatcaatataa 594
||| |||||| | |||||||| ||||||||||| || | ||| || ||||| ||||||
Sbjct: 433 ggcattgccttttcaagtgctttaacatgagcatcgacaagatcagtaacatcgatataa 374
Query: 595 tctcttatgcaggttccatcagctgtgggataatctgttcctttaacctttaatcctgga 654
|||||||| || |||||||| ||| ||| || |||||||||||||||| ||| | |
Sbjct: 373 tctcttatacaagttccatcgtgtgtcttatagtccgttcctttaacctttagtccagca 314
Query: 655 atgactcctaatgctgcatcaaagcaagccccagatatccgaccatgctctcgaagttct 714
| | || || |||||||| ||||| ||||| | || |||||||| || |||||
Sbjct: 313 acaataccacgagcagcatcaaaacaagcaccagaagttcgtccatgctcgcgcagttca 254
Query: 715 ggcctaggagcctcacctaatcttccctcagggtcagatccaataacattgaaatatct 773
|| ||||||||||||||||| ||||| || || || |||||||| |||||||| |||||
Sbjct: 253 ggtctaggagcctcacctaaccttccatctggatctgatccaatcacattgaagtatct 195
Score = 71.9 bits (36), Expect = 5e-011
Identities = 69/80 (86%)
Strand = Plus / Minus
Query: 850 atgatatcctctgccattttcttagcttttccatatggattgatagggaactaaggtgtg 909
|||||||| |||||||| |||||||||||||||||||||||||| || | || || ||
Sbjct: 151 atgatatcttctgccatcttcttagcttttccatatggattgatgggtacctgtggagta 92
Query: 910 gcttctgtaataggcatctt 929
|||| ||||||||||||||
Sbjct: 91 tcttcagtaataggcatctt 72
>gb|CK103411.1|CK103411 G115P63.5pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G115P63 5', mRNA sequence
Length = 267
Score = 83.8 bits (42), Expect = 1e-014
Identities = 132/162 (81%)
Strand = Plus / Minus
Query: 451 ccagttgccttcttgcaggcatcaacaaactcattaactgagcgacctcttcctgttcca 510
||||||||||| || || || | ||||||||| || ||||| | ||| |||| || |||
Sbjct: 162 ccagttgcctttttacatgccttaacaaactccttgactgatctaccctttccagtgcca 103
Query: 511 acattgtaaatgccgacttttctaggctctgccttgttgagtgctttcacatgagcatca 570
|||||||| || || ||||| | |||| |||||| | |||||||| ||||||||||||
Sbjct: 102 acattgtagattccaactttaccaggcattgccttttgaagtgctttaacatgagcatca 43
Query: 571 actaaatctgtgacatcaatataatctcttatgcaggttcca 612
|| | ||| || |||||||||||||||||||| || ||||||
Sbjct: 42 acaagatcagtaacatcaatataatctcttatacaagttcca 1
>gb|CB240549.1|CB240549 PopSC00580 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PopSC00580, mRNA sequence
Length = 478
Score = 79.8 bits (40), Expect = 2e-013
Identities = 250/320 (78%)
Strand = Plus / Minus
Query: 454 gttgccttcttgcaggcatcaacaaactcattaactgagcgacctcttcctgttccaaca 513
||||||||||| || || || |||||||| || ||||| | |||| |||| |||||||||
Sbjct: 423 gttgccttcttacatgcttcgacaaactccttcactgatctaccttttccagttccaaca 364
Query: 514 ttgtaaatgccgacttttctaggctctgccttgttgagtgctttcacatgagcatcaact 573
||||||||||| ||||||| ||||| ||| | | || ||||||||||| ||||| ||
Sbjct: 363 ttgtaaatgccaacttttcgaggctttgcatgggcaagagctttcacatgggcatcgacc 304
Query: 574 aaatctgtgacatcaatataatctcttatgcaggttccatcagctgtgggataatctgtt 633
| || |||||||| ||||| || | || || || |||||||| || ||| ||| |
Sbjct: 303 aggtcagtgacatcgatatagtcccgtacacacgtgccatcagcagttttatagtctatc 244
Query: 634 cctttaacctttaatcctggaatgactcctaatgctgcatcaaagcaagccccagatatc 693
||||||| ||| | ||||| || | |||| ||||||||||| ||||| ||||| ||
Sbjct: 243 cctttaagcttgagtcctgttattattcctcgagctgcatcaaaacaagcgccagagatt 184
Query: 694 cgaccatgctctcgaagttctggcctaggagcctcacctaatcttccctcagggtcagat 753
|| |||||||| |||||||| || ||||| || ||||| ||||| || || |||||
Sbjct: 183 cggccatgctcacgaagttcaggttgcggagcttcccctaaccttccttctggatcagac 124
Query: 754 ccaataacattgaaatatct 773
||||||| |||||| |||||
Sbjct: 123 ccaataatattgaagtatct 104
Score = 69.9 bits (35), Expect = 2e-010
Identities = 53/59 (89%)
Strand = Plus / Minus
Query: 835 tttgagaaatctattatgatatcctctgccattttcttagcttttccatatggattgat 893
|||||||| || ||||||||||| |||||||||||||| ||||||||||| || |||||
Sbjct: 75 tttgagaagtcaattatgatatcttctgccattttcttggcttttccataggggttgat 17
>gb|DT517331.1|DT517331 WS02434.B21_A05 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02434_A05 3', mRNA sequence
Length = 281
Score = 75.8 bits (38), Expect = 3e-012
Identities = 89/106 (83%)
Strand = Plus / Plus
Query: 668 ctgcatcaaagcaagccccagatatccgaccatgctctcgaagttctggcctaggagcct 727
|||||||||| ||||| ||||| || || |||||||| ||||| || || | ||||| |
Sbjct: 1 ctgcatcaaaacaagcaccagagattcggccatgctcacgaagctcaggtcgtggagctt 60
Query: 728 cacctaatcttccctcagggtcagatccaataacattgaaatatct 773
| ||||||||||| || |||||||| |||||||||||||| |||||
Sbjct: 61 cccctaatcttccttccgggtcagacccaataacattgaagtatct 106
Score = 71.9 bits (36), Expect = 5e-011
Identities = 96/116 (82%)
Strand = Plus / Plus
Query: 838 gagaaatctattatgatatcctctgccattttcttagcttttccatatggattgataggg 897
||||| || ||||||||||| |||||||||||||| ||||||||||| || ||||| ||
Sbjct: 138 gagaagtcaattatgatatcttctgccattttcttggcttttccataggggttgattgga 197
Query: 898 aactaaggtgtggcttctgtaataggcatcttatctggttctccgtaggtagcaca 953
| || ||| || ||||| |||| ||||||||| ||||||||||| || |||||
Sbjct: 198 agctgaggagtttcttctctaatcggcatcttaataggttctccgtacgttgcaca 253
>gb|BI138525.1|BI138525 F108P50Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 410
Score = 71.9 bits (36), Expect = 5e-011
Identities = 69/80 (86%)
Strand = Plus / Plus
Query: 850 atgatatcctctgccattttcttagcttttccatatggattgatagggaactaaggtgtg 909
|||||||| |||||||| ||||||||||||||||||||||| || || | || || |||
Sbjct: 67 atgatatcttctgccatcttcttagcttttccatatggattaatgggtacctgtggagtg 126
Query: 910 gcttctgtaataggcatctt 929
|||| ||||||||||||||
Sbjct: 127 tcttcagtaataggcatctt 146
>gb|CA934844.1|CA934844 MTU5TS.P24.F11 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 385
Score = 71.9 bits (36), Expect = 5e-011
Identities = 87/104 (83%)
Strand = Plus / Plus
Query: 670 gcatcaaagcaagccccagatatccgaccatgctctcgaagttctggcctaggagcctca 729
|||||||| ||||| ||||| || || || ||||| || ||||| || ||||||||||||
Sbjct: 194 gcatcaaaacaagcgccagaaattcgtccgtgctcacgcagttcaggtctaggagcctca 253
Query: 730 cctaatcttccctcagggtcagatccaataacattgaaatatct 773
||||| ||||| || || || |||||||| |||||||| |||||
Sbjct: 254 cctaaccttccatctggatctgatccaatcacattgaagtatct 297
Score = 69.9 bits (35), Expect = 2e-010
Identities = 89/107 (83%)
Strand = Plus / Plus
Query: 508 ccaacattgtaaatgccgacttttctaggctctgccttgttgagtgctttcacatgagca 567
||||||||||| || || ||||| | |||| |||||| | |||||||| |||||||||
Sbjct: 32 ccaacattgtagattccaactttcccaggcattgccttttcaagtgctttaacatgagca 91
Query: 568 tcaactaaatctgtgacatcaatataatctcttatgcaggttccatc 614
||||| | ||| || ||||| |||||||||||||| || ||||||||
Sbjct: 92 tcaacaagatcagtaacatcgatataatctcttatacaagttccatc 138
Score = 65.9 bits (33), Expect = 3e-009
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 850 atgatatcctctgccattttcttagcttttccatatggatt 890
|||||||| |||||||| |||||||||||||||||||||||
Sbjct: 341 atgatatcttctgccatcttcttagcttttccatatggatt 381
>gb|AC149295.1| Populus trichocarpa clone Pop1-008L01, complete sequence
Length = 101981
Score = 71.9 bits (36), Expect = 5e-011
Identities = 87/104 (83%)
Strand = Plus / Minus
Query: 670 gcatcaaagcaagccccagatatccgaccatgctctcgaagttctggcctaggagcctca 729
|||||||| ||||| ||||| || || || ||||| || ||||| || ||||||||||||
Sbjct: 35558 gcatcaaaacaagcaccagaaattcgtccgtgctcacgcagttcaggtctaggagcctca 35499
Query: 730 cctaatcttccctcagggtcagatccaataacattgaaatatct 773
||||| ||||| || || || |||||||| |||||||| |||||
Sbjct: 35498 cctaaccttccatctggatctgatccaatcacattgaagtatct 35455
Score = 69.9 bits (35), Expect = 2e-010
Identities = 89/107 (83%)
Strand = Plus / Minus
Query: 508 ccaacattgtaaatgccgacttttctaggctctgccttgttgagtgctttcacatgagca 567
||||||||||| || || ||||| | |||| |||||| | |||||||| |||||||||
Sbjct: 36145 ccaacattgtagattccaactttcccaggcattgccttttcaagtgctttaacatgagca 36086
Query: 568 tcaactaaatctgtgacatcaatataatctcttatgcaggttccatc 614
||||| | ||| || ||||| |||||||||||||| || ||||||||
Sbjct: 36085 tcaacaagatcagtaacatcgatataatctcttatacaagttccatc 36039
Score = 65.9 bits (33), Expect = 3e-009
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 850 atgatatcctctgccattttcttagcttttccatatggatt 890
|||||||| |||||||| |||||||||||||||||||||||
Sbjct: 35097 atgatatcttctgccatcttcttagcttttccatatggatt 35057
>gb|AC149424.1| Populus trichocarpa clone Pop1-011N15, complete sequence
Length = 152544
Score = 71.9 bits (36), Expect = 5e-011
Identities = 87/104 (83%)
Strand = Plus / Minus
Query: 670 gcatcaaagcaagccccagatatccgaccatgctctcgaagttctggcctaggagcctca 729
|||||||| ||||| ||||| || || || ||||| || ||||| || ||||||||||||
Sbjct: 84705 gcatcaaaacaagcaccagaaattcgtccgtgctcacgcagttcaggtctaggagcctca 84646
Query: 730 cctaatcttccctcagggtcagatccaataacattgaaatatct 773
||||| ||||| || || || |||||||| |||||||| |||||
Sbjct: 84645 cctaaccttccatctggatctgatccaatcacattgaagtatct 84602
Score = 69.9 bits (35), Expect = 2e-010
Identities = 89/107 (83%)
Strand = Plus / Minus
Query: 508 ccaacattgtaaatgccgacttttctaggctctgccttgttgagtgctttcacatgagca 567
||||||||||| || || ||||| | |||| |||||| | |||||||| |||||||||
Sbjct: 85292 ccaacattgtagattccaactttcccaggcattgccttttcaagtgctttaacatgagca 85233
Query: 568 tcaactaaatctgtgacatcaatataatctcttatgcaggttccatc 614
||||| | ||| || ||||| |||||||||||||| || ||||||||
Sbjct: 85232 tcaacaagatcagtaacatcgatataatctcttatacaagttccatc 85186
Score = 65.9 bits (33), Expect = 3e-009
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 850 atgatatcctctgccattttcttagcttttccatatggatt 890
|||||||| |||||||| |||||||||||||||||||||||
Sbjct: 84244 atgatatcttctgccatcttcttagcttttccatatggatt 84204
>gb|AC149425.1| Populus trichocarpa clone Pop1-041F22, complete sequence
Length = 106128
Score = 71.9 bits (36), Expect = 5e-011
Identities = 87/104 (83%)
Strand = Plus / Plus
Query: 670 gcatcaaagcaagccccagatatccgaccatgctctcgaagttctggcctaggagcctca 729
|||||||| ||||| ||||| || || || ||||| || ||||| || ||||||||||||
Sbjct: 14205 gcatcaaaacaagcaccagaaattcgtccgtgctcacgcagttcaggtctaggagcctca 14264
Query: 730 cctaatcttccctcagggtcagatccaataacattgaaatatct 773
||||| ||||| || || || |||||||| |||||||| |||||
Sbjct: 14265 cctaaccttccatctggatctgatccaatcacattgaagtatct 14308
Score = 69.9 bits (35), Expect = 2e-010
Identities = 89/107 (83%)
Strand = Plus / Plus
Query: 508 ccaacattgtaaatgccgacttttctaggctctgccttgttgagtgctttcacatgagca 567
||||||||||| || || ||||| | |||| |||||| | |||||||| |||||||||
Sbjct: 13618 ccaacattgtagattccaactttcccaggcattgccttttcaagtgctttaacatgagca 13677
Query: 568 tcaactaaatctgtgacatcaatataatctcttatgcaggttccatc 614
||||| | ||| || ||||| |||||||||||||| || ||||||||
Sbjct: 13678 tcaacaagatcagtaacatcgatataatctcttatacaagttccatc 13724
Score = 65.9 bits (33), Expect = 3e-009
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 850 atgatatcctctgccattttcttagcttttccatatggatt 890
|||||||| |||||||| |||||||||||||||||||||||
Sbjct: 14666 atgatatcttctgccatcttcttagcttttccatatggatt 14706
>gb|AC149426.1| Populus trichocarpa clone Pop1-053A03, complete sequence
Length = 148552
Score = 71.9 bits (36), Expect = 5e-011
Identities = 87/104 (83%)
Strand = Plus / Plus
Query: 670 gcatcaaagcaagccccagatatccgaccatgctctcgaagttctggcctaggagcctca 729
|||||||| ||||| ||||| || || || ||||| || ||||| || ||||||||||||
Sbjct: 14851 gcatcaaaacaagcaccagaaattcgtccgtgctcacgcagttcaggtctaggagcctca 14910
Query: 730 cctaatcttccctcagggtcagatccaataacattgaaatatct 773
||||| ||||| || || || |||||||| |||||||| |||||
Sbjct: 14911 cctaaccttccatctggatctgatccaatcacattgaagtatct 14954
Score = 69.9 bits (35), Expect = 2e-010
Identities = 89/107 (83%)
Strand = Plus / Plus
Query: 508 ccaacattgtaaatgccgacttttctaggctctgccttgttgagtgctttcacatgagca 567
||||||||||| || || ||||| | |||| |||||| | |||||||| |||||||||
Sbjct: 14264 ccaacattgtagattccaactttcccaggcattgccttttcaagtgctttaacatgagca 14323
Query: 568 tcaactaaatctgtgacatcaatataatctcttatgcaggttccatc 614
||||| | ||| || ||||| |||||||||||||| || ||||||||
Sbjct: 14324 tcaacaagatcagtaacatcgatataatctcttatacaagttccatc 14370
Score = 65.9 bits (33), Expect = 3e-009
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 850 atgatatcctctgccattttcttagcttttccatatggatt 890
|||||||| |||||||| |||||||||||||||||||||||
Sbjct: 15312 atgatatcttctgccatcttcttagcttttccatatggatt 15352
>gb|BI131118.1|BI131118 G115P63Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 550
Score = 69.9 bits (35), Expect = 2e-010
Identities = 132/163 (80%), Gaps = 1/163 (0%)
Strand = Plus / Minus
Query: 451 ccagttgccttcttgcaggcatcaacaaactcattaactgagcgacctcttcctgttcca 510
||||||||||| || || || | ||||||||| || ||||| | ||| |||| || |||
Sbjct: 163 ccagttgcctttttacatgccttaacaaactccttgactgatctaccctttccagtgcca 104
Query: 511 acattgtaaatgccgacttttctaggctctgccttgttgagtgctttcacatgagcatca 570
|||||||| || || ||||| | |||| |||||| | |||||||| ||||||||||||
Sbjct: 103 acattgtagattccaactttaccaggcattgccttttgaagtgctttaacatgagcatca 44
Query: 571 actaaatctgtgacatcaata-taatctcttatgcaggttcca 612
|| | ||| || ||||||||| ||||||||||| || ||||||
Sbjct: 43 acaagatcagtaacatcaatactaatctcttatacaagttcca 1
>gb|BU809199.1|BU809199 UL54PH12 Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 520
Score = 65.9 bits (33), Expect = 3e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 550 agtgctttcacatgagcatcaactaaatctgtgacatcaatataatctcttat 602
|||||||| |||||||||||||| | ||| || ||||||||||||||||||||
Sbjct: 149 agtgctttaacatgagcatcaacaagatcagtaacatcaatataatctcttat 97
>gb|BU814412.1|BU814412 N029C01 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 349
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 850 atgatatcctctgccattttcttagcttttccatatggatt 890
||||||| |||||||| |||||||||||||||||||||||
Sbjct: 318 atgatatgttctgccatcttcttagcttttccatatggatt 278
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 134,384
Number of Sequences: 369679
Number of extensions: 134384
Number of successful extensions: 39665
Number of sequences better than 0.5: 20
Number of HSP's better than 0.5 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39526
Number of HSP's gapped (non-prelim): 135
length of query: 1016
length of database: 203,408,664
effective HSP length: 19
effective length of query: 997
effective length of database: 196,384,763
effective search space: 195795608711
effective search space used: 195795608711
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)