BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3106097.2.2
(1005 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DT477637.1|DT477637 WS02520.BR_I13 PT-MB-N-A-15 Populus ... 52 4e-005
gb|DT478507.1|DT478507 WS02522.BR_P13 PT-MB-N-A-15 Populus ... 52 4e-005
gb|DT482695.1|DT482695 WS02520.B21_I13 PT-MB-N-A-15 Populus... 52 4e-005
gb|BI130274.1|BI130274 G103P25Y Populus cambium cDNA librar... 48 7e-004
gb|BI130313.1|BI130313 G103P72Y Populus cambium cDNA librar... 48 7e-004
gb|BU835835.1|BU835835 T079C04 Populus apical shoot cDNA li... 48 7e-004
gb|CK103107.1|CK103107 G103P72.5pR Populus tension wood cDN... 48 7e-004
gb|AJ772144.1|AJ772144 AJ772144 Populus euphratica shoot in... 48 7e-004
gb|BU896473.1|BU896473 X041D07 Populus wood cDNA library Po... 40 0.16
gb|DT483569.1|DT483569 WS02522.B21_P13 PT-MB-N-A-15 Populus... 40 0.16
gb|DT488170.1|DT488170 WS02535.B21_L05 PT-MB-N-A-15 Populus... 40 0.16
gb|DT492401.1|DT492401 WS02550.C21_J20 PT-MB-N-A-15 Populus... 40 0.16
>gb|DT477637.1|DT477637 WS02520.BR_I13 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02520_I13 5', mRNA sequence
Length = 751
Score = 52.0 bits (26), Expect = 4e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 477 tgtggtgacacagattatgaaggactacttggaggcgtgcacaaaa 522
|||||||||||||||||||||||| | ||||| || |||||||||
Sbjct: 139 tgtggtgacacagattatgaaggattgcttggtgggctgcacaaaa 184
>gb|DT478507.1|DT478507 WS02522.BR_P13 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02522_P13 5', mRNA sequence
Length = 788
Score = 52.0 bits (26), Expect = 4e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 477 tgtggtgacacagattatgaaggactacttggaggcgtgcacaaaa 522
|||||||||||||||||||||||| | ||||| || |||||||||
Sbjct: 567 tgtggtgacacagattatgaaggattgcttggtgggctgcacaaaa 522
>gb|DT482695.1|DT482695 WS02520.B21_I13 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02520_I13 3', mRNA sequence
Length = 751
Score = 52.0 bits (26), Expect = 4e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 477 tgtggtgacacagattatgaaggactacttggaggcgtgcacaaaa 522
|||||||||||||||||||||||| | ||||| || |||||||||
Sbjct: 613 tgtggtgacacagattatgaaggattgcttggtgggctgcacaaaa 568
>gb|BI130274.1|BI130274 G103P25Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 425
Score = 48.1 bits (24), Expect = 7e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 124 attatcactcccaaattgaatatcgctggggaggagaagg 163
|||||||||| || ||||||||||| ||||| ||||||||
Sbjct: 101 attatcactcacacattgaatatcgttggggtggagaagg 140
>gb|BI130313.1|BI130313 G103P72Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 220
Score = 48.1 bits (24), Expect = 7e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 124 attatcactcccaaattgaatatcgctggggaggagaagg 163
|||||||||| || ||||||||||| ||||| ||||||||
Sbjct: 77 attatcactcacacattgaatatcgttggggtggagaagg 116
>gb|BU835835.1|BU835835 T079C04 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 673
Score = 48.1 bits (24), Expect = 7e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 124 attatcactcccaaattgaatatcgctggggaggagaagg 163
|||||||||| || ||||||||||| ||||| ||||||||
Sbjct: 146 attatcactcacacattgaatatcgttggggtggagaagg 185
Score = 40.1 bits (20), Expect = 0.16
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 477 tgtggtgacacagattatgaagga 500
||||| ||||||||||||||||||
Sbjct: 508 tgtggagacacagattatgaagga 531
>gb|CK103107.1|CK103107 G103P72.5pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G103P72 5', mRNA sequence
Length = 597
Score = 48.1 bits (24), Expect = 7e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 124 attatcactcccaaattgaatatcgctggggaggagaagg 163
|||||||||| || ||||||||||| ||||| ||||||||
Sbjct: 101 attatcactcacacattgaatatcgttggggtggagaagg 140
>gb|AJ772144.1|AJ772144 AJ772144 Populus euphratica shoot in vitro plantlet Israel Populus
euphratica cDNA clone P0001700002A12F1, mRNA sequence
Length = 371
Score = 48.1 bits (24), Expect = 7e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 477 tgtggtgacacagattatgaagga 500
||||||||||||||||||||||||
Sbjct: 57 tgtggtgacacagattatgaagga 80
>gb|BU896473.1|BU896473 X041D07 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 573
Score = 40.1 bits (20), Expect = 0.16
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 477 tgtggtgacacagattatgaagga 500
||||| ||||||||||||||||||
Sbjct: 87 tgtggagacacagattatgaagga 110
>gb|DT483569.1|DT483569 WS02522.B21_P13 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02522_P13 3', mRNA sequence
Length = 813
Score = 40.1 bits (20), Expect = 0.16
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 477 tgtggtgacacagattatgaagga 500
|||||||||||| |||||||||||
Sbjct: 454 tgtggtgacacatattatgaagga 477
>gb|DT488170.1|DT488170 WS02535.B21_L05 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02535_L05 3', mRNA sequence
Length = 901
Score = 40.1 bits (20), Expect = 0.16
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 477 tgtggtgacacagattatgaagga 500
||||| ||||||||||||||||||
Sbjct: 600 tgtggagacacagattatgaagga 577
>gb|DT492401.1|DT492401 WS02550.C21_J20 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02550_J20 3', mRNA sequence
Length = 852
Score = 40.1 bits (20), Expect = 0.16
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 477 tgtggtgacacagattatgaagga 500
||||| ||||||||||||||||||
Sbjct: 600 tgtggagacacagattatgaagga 577
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 126,630
Number of Sequences: 369679
Number of extensions: 126630
Number of successful extensions: 36922
Number of sequences better than 0.5: 12
Number of HSP's better than 0.5 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36897
Number of HSP's gapped (non-prelim): 25
length of query: 1005
length of database: 203,408,664
effective HSP length: 19
effective length of query: 986
effective length of database: 196,384,763
effective search space: 193635376318
effective search space used: 193635376318
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)