BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3099514.2.1
(547 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AI163591.1|AI163591 A044p63u Hybrid aspen plasmid librar... 64 6e-009
gb|BU863261.1|BU863261 S026A01 Populus imbibed seed cDNA li... 64 6e-009
gb|BU884989.1|BU884989 R019A10 Populus root cDNA library Po... 64 6e-009
gb|CK098949.1|CK098949 A044P63.5pR Hybrid aspen plasmid lib... 64 6e-009
gb|DN497620.1|DN497620 R019A11.5pR Populus root cDNA librar... 64 6e-009
gb|BI126233.1|BI126233 I072P35P Populus leaf cDNA library P... 58 4e-007
gb|BU883795.1|BU883795 R001E05 Populus root cDNA library Po... 56 1e-006
gb|CV225923.1|CV225923 WS0162.B21_M12 PT-DX-A-7 Populus tri... 56 1e-006
gb|CV241616.1|CV241616 WS02512.B21_L21 PT-MB-N-A-15 Populus... 56 1e-006
gb|CV244822.1|CV244822 WS0255.B21_L13 PT-MB-N-A-15 Populus ... 56 1e-006
gb|CV249977.1|CV249977 WS01125.B21_O23 PT-P-FL-A-2 Populus ... 56 1e-006
gb|CV260145.1|CV260145 WS02013.B21_E10 PTxN-IB-N-A-11 Popul... 56 1e-006
gb|CV263324.1|CV263324 WS02020.B21_P14 PTxN-IB-N-A-11 Popul... 56 1e-006
gb|BP936190.1|BP936190 BP936190 full-length enriched poplar... 56 1e-006
gb|BP936274.1|BP936274 BP936274 full-length enriched poplar... 56 1e-006
gb|DT514956.1|DT514956 WS02426.B21_D22 PTxD-ICC-N-A-14 Popu... 56 1e-006
gb|AJ778351.1|AJ778351 AJ778351 Populus euphratica cambium ... 48 4e-004
gb|BU872487.1|BU872487 Q043E05 Populus flower cDNA library ... 42 0.022
gb|BU814899.1|BU814899 N034F10 Populus bark cDNA library Po... 40 0.086
>gb|AI163591.1|AI163591 A044p63u Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 369
Score = 63.9 bits (32), Expect = 6e-009
Identities = 104/128 (81%)
Strand = Plus / Plus
Query: 68 acatggaagatatactcagagaggttgatgatactggccggggtctacggtttctggaag 127
||||||||||| ||||| || ||| |||||| | |||||||||| || ||||| ||||||
Sbjct: 87 acatggaagatttactctgaaaggctgatgacattggccggggtatatggtttttggaag 146
Query: 128 tacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatgttctacatactg 187
|| || || || || |||||||| ||||| | | || || |||||||||||||| ||
Sbjct: 147 tatgtttcaaaacttgagaggcgtgagacccgaagatatctcgagatgttctacattctc 206
Query: 188 aagttccg 195
||||||||
Sbjct: 207 aagttccg 214
>gb|BU863261.1|BU863261 S026A01 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 424
Score = 63.9 bits (32), Expect = 6e-009
Identities = 104/128 (81%)
Strand = Plus / Plus
Query: 68 acatggaagatatactcagagaggttgatgatactggccggggtctacggtttctggaag 127
||||||||||| ||||| || ||| |||||| | |||||||||| || ||||| ||||||
Sbjct: 147 acatggaagatttactctgaaaggctgatgacattggccggggtatatggtttttggaag 206
Query: 128 tacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatgttctacatactg 187
|| || || || || |||||||| ||||| | | || || |||||||||||||| ||
Sbjct: 207 tatgtttcaaaacttgagaggcgtgagacccgaagatatctcgagatgttctacattctc 266
Query: 188 aagttccg 195
||||||||
Sbjct: 267 aagttccg 274
>gb|BU884989.1|BU884989 R019A10 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 646
Score = 63.9 bits (32), Expect = 6e-009
Identities = 104/128 (81%)
Strand = Plus / Plus
Query: 68 acatggaagatatactcagagaggttgatgatactggccggggtctacggtttctggaag 127
||||||||||| ||||| || ||| |||||| | |||||||||| || ||||| ||||||
Sbjct: 191 acatggaagatttactctgaaaggctgatgacattggccggggtatatggtttttggaag 250
Query: 128 tacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatgttctacatactg 187
|| || || || || |||||||| ||||| | | || || |||||||||||||| ||
Sbjct: 251 tatgtttcaaaacttgagaggcgtgagacccgaagatatctcgagatgttctacattctc 310
Query: 188 aagttccg 195
||||||||
Sbjct: 311 aagttccg 318
>gb|CK098949.1|CK098949 A044P63.5pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A044P63 5', mRNA sequence
Length = 549
Score = 63.9 bits (32), Expect = 6e-009
Identities = 104/128 (81%)
Strand = Plus / Plus
Query: 68 acatggaagatatactcagagaggttgatgatactggccggggtctacggtttctggaag 127
||||||||||| ||||| || ||| |||||| | |||||||||| || ||||| ||||||
Sbjct: 129 acatggaagatttactctgaaaggctgatgacattggccggggtatatggtttttggaag 188
Query: 128 tacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatgttctacatactg 187
|| || || || || |||||||| ||||| | | || || |||||||||||||| ||
Sbjct: 189 tatgtttcaaaacttgagaggcgtgagacccgaagatatctcgagatgttctacattctc 248
Query: 188 aagttccg 195
||||||||
Sbjct: 249 aagttccg 256
>gb|DN497620.1|DN497620 R019A11.5pR Populus root cDNA library Populus tremula x Populus
tremuloides cDNA clone R019A11 5', mRNA sequence
Length = 726
Score = 63.9 bits (32), Expect = 6e-009
Identities = 104/128 (81%)
Strand = Plus / Plus
Query: 68 acatggaagatatactcagagaggttgatgatactggccggggtctacggtttctggaag 127
||||||||||| ||||| || ||| |||||| | |||||||||| || ||||| ||||||
Sbjct: 179 acatggaagatttactctgaaaggctgatgacattggccggggtatatggtttttggaag 238
Query: 128 tacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatgttctacatactg 187
|| || || || || |||||||| ||||| | | || || |||||||||||||| ||
Sbjct: 239 tatgtttcaaaacttgagaggcgtgagacccgaagatatctcgagatgttctacattctc 298
Query: 188 aagttccg 195
||||||||
Sbjct: 299 aagttccg 306
>gb|BI126233.1|BI126233 I072P35P Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 380
Score = 58.0 bits (29), Expect = 4e-007
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 68 acatggaagatatactcagagaggttgatgatactggccggggtctacggtttctggaag 127
||||||||||| ||||| || ||| |||||| | |||||||||| || ||||| ||||||
Sbjct: 104 acatggaagatttactctgaaaggctgatgacattggccggggtatatggtttttggaag 163
Query: 128 tacgtgtcgaagctcgagaggcgggagac 156
|| || || || || |||||||| |||||
Sbjct: 164 tatgtctcaaaacttgagaggcgtgagac 192
>gb|BU883795.1|BU883795 R001E05 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 708
Score = 56.0 bits (28), Expect = 1e-006
Identities = 103/128 (80%)
Strand = Plus / Plus
Query: 68 acatggaagatatactcagagaggttgatgatactggccggggtctacggtttctggaag 127
||||||||||| ||||| || ||| |||| | | |||||||||| || ||||| ||||||
Sbjct: 82 acatggaagatttactctgaaaggctgataacattggccggggtatatggtttttggaag 141
Query: 128 tacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatgttctacatactg 187
|| || || || || |||||||| ||||| | | || || |||||||||||||| ||
Sbjct: 142 tatgtttcaaaacttgagaggcgtgagacccgaagatatctcgagatgttctacattctc 201
Query: 188 aagttccg 195
||||||||
Sbjct: 202 aagttccg 209
>gb|CV225923.1|CV225923 WS0162.B21_M12 PT-DX-A-7 Populus trichocarpa cDNA clone WS0162_M12
3', mRNA sequence
Length = 921
Score = 56.0 bits (28), Expect = 1e-006
Identities = 103/128 (80%)
Strand = Plus / Minus
Query: 68 acatggaagatatactcagagaggttgatgatactggccggggtctacggtttctggaag 127
||||||||||| ||||| || ||| |||||| | |||| ||||| || ||||| ||||||
Sbjct: 642 acatggaagatttactctgaaaggctgatgacattggctggggtatatggtttttggaag 583
Query: 128 tacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatgttctacatactg 187
|| || || || || |||||||| ||||| | | || || |||||||||||||| ||
Sbjct: 582 tatgtttccaaacttgagaggcgtgagacccgaagatatctcgagatgttctacattctc 523
Query: 188 aagttccg 195
||||||||
Sbjct: 522 aagttccg 515
>gb|CV241616.1|CV241616 WS02512.B21_L21 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02512_L21 3', mRNA sequence
Length = 745
Score = 56.0 bits (28), Expect = 1e-006
Identities = 103/128 (80%)
Strand = Plus / Minus
Query: 68 acatggaagatatactcagagaggttgatgatactggccggggtctacggtttctggaag 127
||||||||||| ||||| || ||| |||||| | |||| ||||| || ||||| ||||||
Sbjct: 670 acatggaagatttactctgaaaggctgatgacattggctggggtatatggtttttggaag 611
Query: 128 tacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatgttctacatactg 187
|| || || || || |||||||| ||||| | | || || |||||||||||||| ||
Sbjct: 610 tatgtttccaaacttgagaggcgtgagacccgaagatatctcgagatgttctacattctc 551
Query: 188 aagttccg 195
||||||||
Sbjct: 550 aagttccg 543
>gb|CV244822.1|CV244822 WS0255.B21_L13 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0255_L13 3', mRNA sequence
Length = 770
Score = 56.0 bits (28), Expect = 1e-006
Identities = 103/128 (80%)
Strand = Plus / Minus
Query: 68 acatggaagatatactcagagaggttgatgatactggccggggtctacggtttctggaag 127
||||||||||| ||||| || ||| |||||| | |||| ||||| || ||||| ||||||
Sbjct: 644 acatggaagatttactctgaaaggctgatgacattggctggggtatatggtttttggaag 585
Query: 128 tacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatgttctacatactg 187
|| || || || || |||||||| ||||| | | || || |||||||||||||| ||
Sbjct: 584 tatgtttccaaacttgagaggcgtgagacccgaagatatctcgagatgttctacattctc 525
Query: 188 aagttccg 195
||||||||
Sbjct: 524 aagttccg 517
>gb|CV249977.1|CV249977 WS01125.B21_O23 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01125_O23 3', mRNA sequence
Length = 700
Score = 56.0 bits (28), Expect = 1e-006
Identities = 103/128 (80%)
Strand = Plus / Minus
Query: 68 acatggaagatatactcagagaggttgatgatactggccggggtctacggtttctggaag 127
||||||||||| ||||| || ||| |||||| | |||| ||||| || ||||| ||||||
Sbjct: 409 acatggaagatttactctgaaaggctgatgacattggctggggtatatggtttttggaag 350
Query: 128 tacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatgttctacatactg 187
|| || || || || |||||||| ||||| | | || || |||||||||||||| ||
Sbjct: 349 tatgtttccaaacttgagaggcgtgagacccgaagatatctcgagatgttctacattctc 290
Query: 188 aagttccg 195
||||||||
Sbjct: 289 aagttccg 282
>gb|CV260145.1|CV260145 WS02013.B21_E10 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02013_E10 3', mRNA sequence
Length = 804
Score = 56.0 bits (28), Expect = 1e-006
Identities = 103/128 (80%)
Strand = Plus / Minus
Query: 68 acatggaagatatactcagagaggttgatgatactggccggggtctacggtttctggaag 127
||||||||||| ||||| || ||| |||||| | |||| ||||| || ||||| ||||||
Sbjct: 720 acatggaagatttactctgaaaggctgatgacattggctggggtatatggtttttggaag 661
Query: 128 tacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatgttctacatactg 187
|| || || || || |||||||| ||||| | | || || |||||||||||||| ||
Sbjct: 660 tatgtttccaaacttgagaggcgtgagacccgaagatatctcgagatgttctacattctc 601
Query: 188 aagttccg 195
||||||||
Sbjct: 600 aagttccg 593
>gb|CV263324.1|CV263324 WS02020.B21_P14 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02020_P14 3', mRNA sequence
Length = 827
Score = 56.0 bits (28), Expect = 1e-006
Identities = 103/128 (80%)
Strand = Plus / Minus
Query: 68 acatggaagatatactcagagaggttgatgatactggccggggtctacggtttctggaag 127
||||||||||| ||||| || ||| |||||| | |||| ||||| || ||||| ||||||
Sbjct: 760 acatggaagatttactctgaaaggctgatgacattggctggggtatatggtttttggaag 701
Query: 128 tacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatgttctacatactg 187
|| || || || || |||||||| ||||| | | || || |||||||||||||| ||
Sbjct: 700 tatgtttccaaacttgagaggcgtgagacccgaagatatctcgagatgttctacattctc 641
Query: 188 aagttccg 195
||||||||
Sbjct: 640 aagttccg 633
>gb|BP936190.1|BP936190 BP936190 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-087_F11.r 3', mRNA sequence
Length = 568
Score = 56.0 bits (28), Expect = 1e-006
Identities = 103/128 (80%)
Strand = Plus / Minus
Query: 68 acatggaagatatactcagagaggttgatgatactggccggggtctacggtttctggaag 127
||||||||||| ||||| || ||| |||||| | |||| ||||| || ||||| ||||||
Sbjct: 427 acatggaagatttactctgaaaggctgatgacaatggctggggtatatggtttttggaag 368
Query: 128 tacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatgttctacatactg 187
|| || || || || |||||||| ||||| | | || || |||||||||||||| ||
Sbjct: 367 tatgtttccaaacttgagaggcgtgagacccgaagatatctcgagatgttctacattctc 308
Query: 188 aagttccg 195
||||||||
Sbjct: 307 aagttccg 300
>gb|BP936274.1|BP936274 BP936274 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-088_J21.r 3', mRNA sequence
Length = 486
Score = 56.0 bits (28), Expect = 1e-006
Identities = 103/128 (80%)
Strand = Plus / Minus
Query: 68 acatggaagatatactcagagaggttgatgatactggccggggtctacggtttctggaag 127
||||||||||| ||||| || ||| |||||| | |||| ||||| || ||||| ||||||
Sbjct: 407 acatggaagatttactctgaaaggctgatgacattggctggggtatatggtttttggaag 348
Query: 128 tacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatgttctacatactg 187
|| || || || || |||||||| ||||| | | || || |||||||||||||| ||
Sbjct: 347 tatgtttccaaacttgagaggcgtgagacccgaagatatctcgagatgttctacattctc 288
Query: 188 aagttccg 195
||||||||
Sbjct: 287 aagttccg 280
>gb|DT514956.1|DT514956 WS02426.B21_D22 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02426_D22 3', mRNA sequence
Length = 909
Score = 56.0 bits (28), Expect = 1e-006
Identities = 103/128 (80%)
Strand = Plus / Minus
Query: 68 acatggaagatatactcagagaggttgatgatactggccggggtctacggtttctggaag 127
||||||||||| ||||| || ||| |||||| | |||| ||||| || ||||| ||||||
Sbjct: 417 acatggaagatttactctgaaaggctgatgacattggctggggtatatggtttttggaag 358
Query: 128 tacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatgttctacatactg 187
|| || || || || |||||||| ||||| | | || || |||||||||||||| ||
Sbjct: 357 tatgtttccaaacttgagaggcgtgagacccgaagatatctcgagatgttctacattctc 298
Query: 188 aagttccg 195
||||||||
Sbjct: 297 aagttccg 290
>gb|AJ778351.1|AJ778351 AJ778351 Populus euphratica cambium 3-6 months Populus euphratica
cDNA clone P0000500002G02F1, mRNA sequence
Length = 702
Score = 48.1 bits (24), Expect = 4e-004
Identities = 99/124 (79%)
Strand = Plus / Plus
Query: 72 ggaagatatactcagagaggttgatgatactggccggggtctacggtttctggaagtacg 131
||||||| ||||| || ||| |||||| | |||| ||||| || ||||| |||||||| |
Sbjct: 59 ggaagatttactctgaaaggctgatgacattggctggggtatatggtttttggaagtatg 118
Query: 132 tgtcgaagctcgagaggcgggagacgaggcgctaccttgagatgttctacatactgaagt 191
| || || || |||||||| ||||| | | || || |||||||||||||| || ||||
Sbjct: 119 tttccaaacttgagaggcgtgagacccgaagatatctcgagatgttctacattctcaagt 178
Query: 192 tccg 195
||||
Sbjct: 179 tccg 182
>gb|BU872487.1|BU872487 Q043E05 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 369
Score = 42.1 bits (21), Expect = 0.022
Identities = 75/93 (80%)
Strand = Plus / Plus
Query: 103 ggccggggtctacggtttctggaagtacgtgtcgaagctcgagaggcgggagacgaggcg 162
||||||||| || ||||| |||||||| || || || || |||||||| ||||| | |
Sbjct: 6 ggccggggtatatggtttttggaagtatgtttcaaaacttgagaggcgtgagacccgaag 65
Query: 163 ctaccttgagatgttctacatactgaagttccg 195
|| || |||||||||||||| || ||||||||
Sbjct: 66 atatctcgagatgttctacattctcaagttccg 98
>gb|BU814899.1|BU814899 N034F10 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 655
Score = 40.1 bits (20), Expect = 0.086
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 68 acatggaagatatactcagagaggttgatgatactggccggggt 111
||||||||||| ||||| || ||| |||||| | ||||||||||
Sbjct: 609 acatggaagatttactctgaaaggctgatgacattggccggggt 652
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 51,237
Number of Sequences: 369679
Number of extensions: 51237
Number of successful extensions: 15554
Number of sequences better than 0.5: 19
Number of HSP's better than 0.5 without gapping: 17
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 15521
Number of HSP's gapped (non-prelim): 20
length of query: 547
length of database: 203,408,664
effective HSP length: 19
effective length of query: 528
effective length of database: 196,384,763
effective search space: 103691154864
effective search space used: 103691154864
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)